D: [iurt_root_command] chroot
Building target platforms: x86_64
Building for target x86_64
Installing /home/pterjan/rpmbuild/SRPMS/gromacs-2024.5-1.mga10.src.rpm
Executing(%mkbuilddir): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.eXvzIG
+ umask 022
+ cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ test -d /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ /usr/bin/rm -rf /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ /usr/bin/mkdir -p /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ /usr/bin/mkdir -p /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.2z3JcT
+ umask 022
+ cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ '[' 1 -eq 1 ']'
+ '[' 1 -eq 1 ']'
+ '[' 1 -eq 1 ']'
+ cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ rm -rf gromacs-2024.5
+ /usr/lib/rpm/rpmuncompress -x /home/pterjan/rpmbuild/SOURCES/gromacs-2024.5.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd gromacs-2024.5
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.AZIIJF
+ umask 022
+ cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full '
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd gromacs-2024.5
+ '[' 1 -eq 1 ']'
+ '[' 1 -eq 1 ']'
+ CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full '
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -Wno-dev -S . -B build -DCMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-DNDEBUG -DCMAKE_C_FLAGS_RELWITHDEBINFO:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_LIBDIR:PATH=lib64 -DCMAKE_INSTALL_LIBEXECDIR:PATH=libexec -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_RUNSTATEDIR:PATH=/run -DCMAKE_INSTALL_SYSCONFDIR:PATH=/etc -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DCMAKE_BUILD_TYPE=RelWithDebInfo -DLIB_SUFFIX=64 -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,--as-needed  -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_STATIC_LIBS:BOOL=OFF -DGMX_HWLOC=ON -DGMX_USE_LMFIT=EXTERNAL -DGMX_USE_MUPARSER=EXTERNAL -DGMX_BLAS_USER=openblas -DGMX_LAPACK_USER=openblas
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Python3_LIBRARIES Development Development.Module Development.Embed) (found suitable version "3.12.8", minimum required is "3.7")
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS
-- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success
-- Performing Test CFLAGS_EXCESS_PREC
-- Performing Test CFLAGS_EXCESS_PREC - Success
-- Performing Test CFLAGS_COPT
-- Performing Test CFLAGS_COPT - Success
-- Performing Test CFLAGS_NOINLINE
-- Performing Test CFLAGS_NOINLINE - Success
-- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS
-- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success
-- Performing Test CXXFLAGS_EXCESS_PREC
-- Performing Test CXXFLAGS_EXCESS_PREC - Success
-- Performing Test CXXFLAGS_COPT
-- Performing Test CXXFLAGS_COPT - Success
-- Performing Test CXXFLAGS_NOINLINE
-- Performing Test CXXFLAGS_NOINLINE - Success
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file pwd.h
-- Looking for include file pwd.h - found
-- Looking for include file dirent.h
-- Looking for include file dirent.h - found
-- Looking for include file time.h
-- Looking for include file time.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file io.h
-- Looking for include file io.h - not found
-- Looking for include file sched.h
-- Looking for include file sched.h - found
-- Looking for include file xmmintrin.h
-- Looking for include file xmmintrin.h - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Looking for nice
-- Looking for nice - found
-- Looking for fsync
-- Looking for fsync - found
-- Looking for _fileno
-- Looking for _fileno - not found
-- Looking for fileno
-- Looking for fileno - found
-- Looking for _commit
-- Looking for _commit - not found
-- Looking for sigaction
-- Looking for sigaction - found
-- Performing Test HAVE_BUILTIN_CLZ
-- Performing Test HAVE_BUILTIN_CLZ - Success
-- Performing Test HAVE_BUILTIN_CLZLL
-- Performing Test HAVE_BUILTIN_CLZLL - Success
-- Looking for clock_gettime in rt
-- Looking for clock_gettime in rt - found
-- Looking for feenableexcept in m
-- Looking for feenableexcept in m - found
-- Looking for fedisableexcept in m
-- Looking for fedisableexcept in m - found
-- Checking for sched.h GNU affinity API
-- Performing Test sched_affinity_compile
-- Performing Test sched_affinity_compile - Success
-- Looking for include file mm_malloc.h
-- Looking for include file mm_malloc.h - found
-- Looking for include file malloc.h
-- Looking for include file malloc.h - found
-- Checking for _mm_malloc()
-- Checking for _mm_malloc() - supported
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for memalign
-- Looking for memalign - not found
-- Using default binary suffix: ""
-- Using default library suffix: ""
-- Looking for HWLOC
-- Looking for hwloc_topology_init
-- Looking for hwloc_topology_init - found
-- hwloc version: 
-- Found HWLOC: /lib64/libhwloc.so (found suitable version "2.11.0", minimum required is "1.5")
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - found
-- Performing Test TEST_ATOMICS
-- Performing Test TEST_ATOMICS - Success
-- Atomic operations found
-- Performing Test PTHREAD_SETAFFINITY
-- Performing Test PTHREAD_SETAFFINITY - Success
-- Detecting best SIMD instructions for this CPU
-- Checking for GCC x86 inline asm
-- Checking for GCC x86 inline asm - supported
-- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt lahf misalignsse mmx msr nonstop_tsc pcid pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3
-- Detected build CPU brand - AMD EPYC 7B13
-- Detected build CPU family - 25
-- Detected build CPU model - 1
-- Detected best SIMD instructions for this CPU - AVX2_256
-- Performing Test C_mavx2_mfma_FLAG_ACCEPTED
-- Performing Test C_mavx2_mfma_FLAG_ACCEPTED - Success
-- Performing Test C_mavx2_mfma_COMPILE_WORKS
-- Performing Test C_mavx2_mfma_COMPILE_WORKS - Success
-- Performing Test CXX_mavx2_mfma_FLAG_ACCEPTED
-- Performing Test CXX_mavx2_mfma_FLAG_ACCEPTED - Success
-- Performing Test CXX_mavx2_mfma_COMPILE_WORKS
-- Performing Test CXX_mavx2_mfma_COMPILE_WORKS - Success
-- Enabling 256-bit AVX2 SIMD instructions using CXX flags:  -mavx2 -mfma
-- Detecting flags to enable runtime detection of AVX-512 units on newer CPUs
-- Performing Test C_march_skylake_avx512_FLAG_ACCEPTED
-- Performing Test C_march_skylake_avx512_FLAG_ACCEPTED - Success
-- Performing Test C_march_skylake_avx512_COMPILE_WORKS
-- Performing Test C_march_skylake_avx512_COMPILE_WORKS - Success
-- Performing Test CXX_march_skylake_avx512_FLAG_ACCEPTED
-- Performing Test CXX_march_skylake_avx512_FLAG_ACCEPTED - Success
-- Performing Test CXX_march_skylake_avx512_COMPILE_WORKS
-- Performing Test CXX_march_skylake_avx512_COMPILE_WORKS - Success
-- Detecting flags to enable runtime detection of AVX-512 units on newer CPUs -  -march=skylake-avx512
-- Performing Test _Wno_unused_command_line_argument_FLAG_ACCEPTED
-- Performing Test _Wno_unused_command_line_argument_FLAG_ACCEPTED - Success
-- Performing Test _callconv___vectorcall
-- Performing Test _callconv___vectorcall - Failed
-- Performing Test _callconv___regcall
-- Performing Test _callconv___regcall - Failed
-- Performing Test _callconv_ 
-- Performing Test _callconv_  - Success
-- Detected build CPU vendor - AMD
-- Detected build CPU stepping - 0
-- Checking for 64-bit off_t
-- Checking for 64-bit off_t - present
-- Checking for fseeko/ftello
-- Checking for fseeko/ftello - present
-- Checking for SIGUSR1
-- Checking for SIGUSR1 - found
-- Checking for pipe support
-- Checking for system XDR support
-- Checking for system XDR support - not present
-- Checking for module 'fftw3f'
--   Found fftw3f, version 3.3.10
-- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so
-- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found
-- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so
-- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found
-- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so
-- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found
-- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so
-- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found
-- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so
-- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found
-- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so
-- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - found
-- Using external FFT library - FFTW3
-- Checking that user BLAS library openblas works
-- Looking for dgemm_
-- Looking for dgemm_ - found
-- Checking that user LAPACK library openblas works
-- Looking for cheev_
-- Looking for cheev_ - found
-- Could not convert sample image, ImageMagick convert can not be used. A possible way to fix it can be found here: https://alexvanderbist.com/2018/fixing-imagick-error-unauthorized
-- Performing Test HAS_WARNING_EVERYTHING
-- Performing Test HAS_WARNING_EVERYTHING - Failed
-- Found Python: /usr/bin/python3.12 (found version "3.12.8") found components: Interpreter
-- Performing Test HAVE_NO_DEPRECATED_COPY
-- Performing Test HAVE_NO_DEPRECATED_COPY - Success
-- Performing Test HAS_NO_STRINGOP_TRUNCATION
-- Performing Test HAS_NO_STRINGOP_TRUNCATION - Success
-- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT
-- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success
-- Performing Test HAS_NO_UNUSED
-- Performing Test HAS_NO_UNUSED - Success
-- Performing Test HAS_NO_UNUSED_PARAMETER
-- Performing Test HAS_NO_UNUSED_PARAMETER - Success
-- Performing Test HAS_NO_MISSING_DECLARATIONS
-- Performing Test HAS_NO_MISSING_DECLARATIONS - Success
-- Performing Test HAS_NO_NULL_CONVERSIONS
-- Performing Test HAS_NO_NULL_CONVERSIONS - Success
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Performing Test HAS_WARNING_NO_ARRAY_BOUNDS
-- Performing Test HAS_WARNING_NO_ARRAY_BOUNDS - Success
-- Performing Test HAS_WARNING_NO_DEPRECATED_NON_PROTOTYPE
-- Performing Test HAS_WARNING_NO_DEPRECATED_NON_PROTOTYPE - Success
-- Performing Test LMFIT_LINKS_OK
-- Performing Test LMFIT_LINKS_OK - Success
-- Found Lmfit: /usr/include (found suitable version "8.2.1", minimum required is "7.0")
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Found Sphinx: /usr/bin/sphinx-build (found suitable version "8.1.3", minimum required is "4.0.0") found components: pygments
-- Configuring done (14.8s)
-- Generating done (1.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BUILD_STATIC_LIBS
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR


-- Build files have been written to: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build
+ /usr/bin/cmake --build build -j16 --verbose
Change Dir: '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'

Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j16
/usr/bin/cmake -S/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 -B/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/CMakeFiles /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build//CMakeFiles/progress.marks
/usr/bin/gmake  -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
/usr/bin/gmake  -f src/gromacs/selection/CMakeFiles/scanner.dir/build.make src/gromacs/selection/CMakeFiles/scanner.dir/depend
/usr/bin/gmake  -f CMakeFiles/release-version-info.dir/build.make CMakeFiles/release-version-info.dir/depend
/usr/bin/gmake  -f src/gromacs/CMakeFiles/thread_mpi.dir/build.make src/gromacs/CMakeFiles/thread_mpi.dir/depend
/usr/bin/gmake  -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/selection /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/selection/CMakeFiles/scanner.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/CMakeFiles/release-version-info.dir/DependInfo.cmake "--color="
/usr/bin/gmake  -f src/gromacs/CMakeFiles/tng_io_zlib.dir/build.make src/gromacs/CMakeFiles/tng_io_zlib.dir/depend
/usr/bin/gmake  -f src/gromacs/CMakeFiles/colvars_objlib.dir/build.make src/gromacs/CMakeFiles/colvars_objlib.dir/depend
/usr/bin/gmake  -f src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/build.make src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/depend
/usr/bin/gmake  -f src/gromacs/options/CMakeFiles/options.dir/build.make src/gromacs/options/CMakeFiles/options.dir/depend
/usr/bin/gmake  -f src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/build.make src/gromacs/energyanalysis/CMakeFiles/energyanalysis.dir/depend
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/CMakeFiles/thread_mpi.dir/DependInfo.cmake "--color="
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cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/errhandler.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -MD -MT src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o -MF CMakeFiles/gmx_objlib.dir/gmx.cpp.o.d -o CMakeFiles/gmx_objlib.dir/gmx.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/programs/gmx.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/selection && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -Wno-null-conversion -MD -MT src/gromacs/selection/CMakeFiles/scanner.dir/scanner.cpp.o -MF CMakeFiles/scanner.dir/scanner.cpp.o.d -o CMakeFiles/scanner.dir/scanner.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/scanner.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/adler32.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/adler32.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/adler32.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/adler32.c
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/bwlzh.c
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -MF CMakeFiles/linearalgebra.dir/eigensolver.cpp.o.d -o CMakeFiles/linearalgebra.dir/eigensolver.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/eigensolver.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/programs/mdrun/mdrun.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvar.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractoption.cpp.o -MF CMakeFiles/options.dir/abstractoption.cpp.o.d -o CMakeFiles/options.dir/abstractoption.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/abstractoption.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/dict.c
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[  5%] Built target release-version-info
[  5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/abstractsection.cpp.o -MF CMakeFiles/options.dir/abstractsection.cpp.o.d -o CMakeFiles/options.dir/abstractsection.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/abstractsection.cpp
[  5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/basicoptions.cpp.o -MF CMakeFiles/options.dir/basicoptions.cpp.o.d -o CMakeFiles/options.dir/basicoptions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/basicoptions.cpp
[  5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/tmpi_malloc.cpp
[  5%] Building C object src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/compress.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/compress.c
[  5%] Building C object src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/crc32.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/crc32.c
[  5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/atomic.cpp
[  5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/lock.cpp
[  5%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/fixpoint.c
[  5%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/behaviorcollection.cpp.o -MF CMakeFiles/options.dir/behaviorcollection.cpp.o.d -o CMakeFiles/options.dir/behaviorcollection.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/behaviorcollection.cpp
[  5%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/pthreads.cpp
[  5%] Building C object src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/deflate.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/deflate.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/deflate.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/deflate.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/deflate.c
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cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inffast.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inffast.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inffast.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/inffast.c
[  5%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/huffman.c
[  5%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/huffmem.c
[  7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/alltoall.cpp
[  7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o
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cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/lz77.c
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cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoption.cpp.o -MF CMakeFiles/options.dir/filenameoption.cpp.o.d -o CMakeFiles/options.dir/filenameoption.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/filenameoption.cpp
[  7%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/programs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/programs/mdrun/nonbonded_bench.cpp
[  7%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/filenameoptionmanager.cpp.o -MF CMakeFiles/options.dir/filenameoptionmanager.cpp.o.d -o CMakeFiles/options.dir/filenameoptionmanager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/filenameoptionmanager.cpp
[  7%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/merge_sort.c
[  7%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -MF CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o.d -o CMakeFiles/linearalgebra.dir/gmx_arpack.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/gmx_arpack.cpp
[  7%] Building C object src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inflate.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inflate.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inflate.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inflate.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/inflate.c
[  7%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/mtf.c
[  7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/barrier.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/barrier.cpp
[  7%] Building C object src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/inftrees.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/inftrees.c
[  7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/p2p_send_recv.cpp
[  7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/bcast.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/bcast.cpp
[  7%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/p2p_wait.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[  7%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/rle.c
[  7%] Built target gmx_objlib
[  7%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/tng_compress.c
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/vals16.c
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/warnmalloc.c
[  8%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/matrix.cpp.o -MF CMakeFiles/linearalgebra.dir/matrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/matrix.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/matrix.cpp
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/widemuldiv.c
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/collective.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/collective.cpp
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/profile.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/profile.cpp
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/comm.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/comm.cpp
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/xtc2.c
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/compression/xtc3.c
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/trees.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/trees.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/trees.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/trees.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/trees.c
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[  8%] Built target energyanalysis
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/lib/tng_io.c
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/reduce.cpp
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/uncompr.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/uncompr.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/uncompr.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/uncompr.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/uncompr.c
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/zutil.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -Wno-deprecated-non-prototype -MD -MT src/gromacs/CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/zutil.c.o -MF CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/zutil.c.o.d -o CMakeFiles/tng_io_zlib.dir/__/external/tng_io/external/zlib/zutil.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib/zutil.c
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/event.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/event.cpp
[  8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/options.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/options.cpp.o -MF CMakeFiles/options.dir/options.cpp.o.d -o CMakeFiles/options.dir/options.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/options.cpp
[  8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsassigner.cpp.o -MF CMakeFiles/options.dir/optionsassigner.cpp.o.d -o CMakeFiles/options.dir/optionsassigner.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/optionsassigner.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[  8%] Built target tng_io_zlib
[  8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsection.cpp.o -MF CMakeFiles/options.dir/optionsection.cpp.o.d -o CMakeFiles/options.dir/optionsection.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/optionsection.cpp
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/reduce_fast.cpp
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/gather.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/gather.cpp
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scatter.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/scatter.cpp
[  8%] Building CXX object src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/linearalgebra && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-stringop-truncation -MD -MT src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -MF CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o.d -o CMakeFiles/linearalgebra.dir/sparsematrix.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/sparsematrix.cpp
[  8%] Building C object src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/gcc -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/external/zlib -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-array-bounds -MD -MT src/gromacs/CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -MF CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o.d -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/src/lib/md5.c
[  8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/optionsvisitor.cpp.o -MF CMakeFiles/options.dir/optionsvisitor.cpp.o.d -o CMakeFiles/options.dir/optionsvisitor.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/optionsvisitor.cpp
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/group.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/group.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/tmpi_init.cpp
[  8%] Built target mdrun_objlib
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/topology.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/topology.cpp
[  8%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/list.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/list.cpp
[  8%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/options && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/options/CMakeFiles/options.dir/timeunitmanager.cpp.o -MF CMakeFiles/options.dir/timeunitmanager.cpp.o.d -o CMakeFiles/options.dir/timeunitmanager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/timeunitmanager.cpp
[ 10%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvar_neuralnetworkcompute.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvar_neuralnetworkcompute.cpp
[ 10%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/type.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/type.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/scan.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/scan.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/numa_malloc.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -MF CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o.d -o CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/once.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/src/once.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvaratoms.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvaratoms.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarbias.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_abf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarbias_abf.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_alb.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarbias_alb.cpp
[ 12%] Building CXX object src/gromacs/options/CMakeFiles/options.dir/treesupport.cpp.o
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[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarbias_histogram.cpp
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cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_histogram_reweight_amd.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarbias_histogram_reweight_amd.cpp
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/pulling /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/pulling/CMakeFiles/pulling.dir/DependInfo.cmake "--color="
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_meta.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarbias_meta.cpp
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/usr/bin/gmake  -f src/gromacs/pulling/CMakeFiles/pulling.dir/build.make src/gromacs/pulling/CMakeFiles/pulling.dir/build
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 12%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/output.cpp.o -MF CMakeFiles/pulling.dir/output.cpp.o.d -o CMakeFiles/pulling.dir/output.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/output.cpp
[ 12%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull.cpp.o -MF CMakeFiles/pulling.dir/pull.cpp.o.d -o CMakeFiles/pulling.dir/pull.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/pull.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 12%] Built target thread_mpi
[ 12%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pull_rotation.cpp.o -MF CMakeFiles/pulling.dir/pull_rotation.cpp.o.d -o CMakeFiles/pulling.dir/pull_rotation.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/pull_rotation.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 12%] Built target scanner
[ 12%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -MF CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o.d -o CMakeFiles/pulling.dir/pullcoordexpressionparser.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/pullcoordexpressionparser.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarbias_restraint.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarbias_restraint.cpp
[ 12%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/pullutil.cpp.o -MF CMakeFiles/pulling.dir/pullutil.cpp.o.d -o CMakeFiles/pulling.dir/pullutil.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/pullutil.cpp
[ 12%] Building CXX object src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/pulling && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT src/gromacs/pulling/CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -MF CMakeFiles/pulling.dir/transformationcoordinate.cpp.o.d -o CMakeFiles/pulling.dir/transformationcoordinate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/transformationcoordinate.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_alchlambda.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_alchlambda.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_angles.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_angles.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_apath.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_apath.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 12%] Built target tng_io_obj
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_combination.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_combination.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_coordnums.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_coordnums.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_distances.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_distances.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_gpath.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_gpath.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_neuralnetwork.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_neuralnetwork.cpp
[ 12%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_protein.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_protein.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_rotations.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_rotations.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarcomp_volmaps.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarcomp_volmaps.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvardeps.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvardeps.cpp
[ 14%] Built target options
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvargrid.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvargrid.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarmodule.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarmodule.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparams.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarparams.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarparse.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarparse.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 14%] Built target pulling
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarproxy.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_io.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarproxy_io.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_replicas.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarproxy_replicas.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_system.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarproxy_system.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_tcl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarproxy_tcl.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarproxy_volmaps.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarproxy_volmaps.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvars_memstream.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvars_memstream.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarscript.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarscript_commands.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_bias.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarscript_commands_bias.cpp
[ 14%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarscript_commands_colvar.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarscript_commands_colvar.cpp
[ 16%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvartypes.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvartypes.cpp
[ 16%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/colvarvalue.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/colvarvalue.cpp
[ 16%] Building CXX object src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0  -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fopenmp -fopenmp -MD -MT src/gromacs/CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -MF CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o.d -o CMakeFiles/colvars_objlib.dir/__/external/colvars/nr_jacobi.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars/nr_jacobi.cpp
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[ 16%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/decidegpuusage.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/decidegpuusage.cpp
[ 16%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -MF CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o.d -o CMakeFiles/taskassignment.dir/decidesimulationworkload.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/decidesimulationworkload.cpp
[ 16%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -MF CMakeFiles/taskassignment.dir/findallgputasks.cpp.o.d -o CMakeFiles/taskassignment.dir/findallgputasks.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/findallgputasks.cpp
[ 16%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -MF CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o.d -o CMakeFiles/taskassignment.dir/reportgpuusage.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/reportgpuusage.cpp
[ 16%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/taskassignment && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -MF CMakeFiles/taskassignment.dir/resourcedivision.cpp.o.d -o CMakeFiles/taskassignment.dir/resourcedivision.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/resourcedivision.cpp
[ 16%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/taskassignment.cpp.o
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[ 16%] Building CXX object src/gromacs/taskassignment/CMakeFiles/taskassignment.dir/usergpuids.cpp.o
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[ 16%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/andersentemperaturecoupling.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/andersentemperaturecoupling.cpp
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[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -MF CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/checkpointhelper.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/checkpointhelper.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -MF CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/compositesimulatorelement.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/compositesimulatorelement.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -MF CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o.d -o CMakeFiles/modularsimulator.dir/computeglobalselement.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/computeglobalselement.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -MF CMakeFiles/modularsimulator.dir/constraintelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/constraintelement.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/constraintelement.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -MF CMakeFiles/modularsimulator.dir/domdechelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/domdechelper.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/domdechelper.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/energydata.cpp.o -MF CMakeFiles/modularsimulator.dir/energydata.cpp.o.d -o CMakeFiles/modularsimulator.dir/energydata.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/energydata.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -MF CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/expandedensembleelement.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/expandedensembleelement.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/firstorderpressurecoupling.cpp.o
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[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/forceelement.cpp.o
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[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -MF CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o.d -o CMakeFiles/modularsimulator.dir/freeenergyperturbationdata.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/freeenergyperturbationdata.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/modularsimulator.cpp.o
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gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
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[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/mttk.cpp.o -MF CMakeFiles/modularsimulator.dir/mttk.cpp.o.d -o CMakeFiles/modularsimulator.dir/mttk.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/mttk.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -MF CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o.d -o CMakeFiles/modularsimulator.dir/nosehooverchains.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/nosehooverchains.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -MF CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o.d -o CMakeFiles/modularsimulator.dir/parrinellorahmanbarostat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/parrinellorahmanbarostat.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -MF CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o.d -o CMakeFiles/modularsimulator.dir/pmeloadbalancehelper.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/pmeloadbalancehelper.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/propagator.cpp.o -MF CMakeFiles/modularsimulator.dir/propagator.cpp.o.d -o CMakeFiles/modularsimulator.dir/propagator.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/propagator.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/pullelement.cpp.o -MF CMakeFiles/modularsimulator.dir/pullelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/pullelement.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/pullelement.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -MF CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o.d -o CMakeFiles/modularsimulator.dir/referencetemperaturemanager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/referencetemperaturemanager.cpp
[ 17%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/signallers.cpp.o -MF CMakeFiles/modularsimulator.dir/signallers.cpp.o.d -o CMakeFiles/modularsimulator.dir/signallers.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/signallers.cpp
[ 19%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -MF CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o.d -o CMakeFiles/modularsimulator.dir/simulatoralgorithm.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/simulatoralgorithm.cpp
[ 19%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -MF CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o.d -o CMakeFiles/modularsimulator.dir/statepropagatordata.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/statepropagatordata.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 19%] Built target colvars_objlib
[ 19%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -MF CMakeFiles/modularsimulator.dir/topologyholder.cpp.o.d -o CMakeFiles/modularsimulator.dir/topologyholder.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/topologyholder.cpp
[ 19%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -MF CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o.d -o CMakeFiles/modularsimulator.dir/trajectoryelement.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/trajectoryelement.cpp
[ 19%] Building CXX object src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/modularsimulator && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -fopenmp -mavx2 -mfma -Wno-missing-field-initializers -MD -MT src/gromacs/modularsimulator/CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -MF CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o.d -o CMakeFiles/modularsimulator.dir/velocityscalingtemperaturecoupling.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/velocityscalingtemperaturecoupling.cpp
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 19%] Built target modularsimulator
/usr/bin/gmake  -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 19%] Generating baseversion-gen.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/VersionInfo.cmake -D VERSION_CMAKEIN=/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.14732103 -D GMX_RELEASE_HASH= -D GMX_SOURCE_HASH= -P /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/cmake/gmxConfigureVersionInfo.cmake
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
/usr/bin/gmake  -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -MF CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/basenetwork.cpp
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/alignedallocator.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/baseversion.cpp
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o
[ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/any.cpp.o -MF CMakeFiles/libgromacs.dir/utility/any.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/any.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/any.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o -MF CMakeFiles/libgromacs.dir/utility/compare.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/compare.cpp
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -MF CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/coolstuff.cpp
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -MF CMakeFiles/libgromacs.dir/utility/booltype.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/booltype.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/booltype.cpp
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/cstringutil.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -MF CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/binaryinformation.cpp
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/datafilefinder.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/errorcodes.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/directoryenumerator.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/errorformat.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/exceptions.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/fatalerror.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -MF CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/fileredirector.cpp
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -MF CMakeFiles/libgromacs.dir/utility/filestream.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/filestream.cpp
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/futil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/futil.cpp
In file included from /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/binaryinformation.cpp:87:
/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include/buildinfo.h:73:9: warning: "HWLOC_VERSION" redefined
   73 | #define HWLOC_VERSION "2.11.0"
      |         ^~~~~~~~~~~~~
In file included from /usr/include/hwloc.h:56,
                 from /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/binaryinformation.cpp:62:
/usr/include/hwloc/autogen/config.h:15:9: note: this is the location of the previous definition
   15 | #define HWLOC_VERSION "2.11.2"
      |         ^~~~~~~~~~~~~
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/gmxassert.cpp
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/gmxomp.cpp
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -MF CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/ikeyvaluetreeerror.cpp
[ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/init.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -MF CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/inmemoryserializer.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -MF CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/int64_to_int.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -MF CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/keyvaluetree.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -MF CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/keyvaluetreemdpwriter.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/keyvaluetreemdpwriter.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -MF CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/keyvaluetreeserializer.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -MF CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/keyvaluetreetransform.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o -MF CMakeFiles/libgromacs.dir/utility/logger.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/logger.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -MF CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/loggerbuilder.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -MF CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/message_string_collector.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/message_string_collector.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -MF CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/mpiinfo.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/mpiinfo.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -MF CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/niceheader.cpp
cc1plus: note: unrecognized command-line option '-Wno-cast-function-type-strict' may have been intended to silence earlier diagnostics
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -MF CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/physicalnodecommunicator.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o -MF CMakeFiles/libgromacs.dir/utility/path.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/path.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -MF CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/pleasecite.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/programcontext.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -MF CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/smalloc.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -MF CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/strconvert.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -MF CMakeFiles/libgromacs.dir/utility/strdb.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/strdb.cpp
[ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -MF CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/stringstream.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/stringutil.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o -MF CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/sycl_version_information.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/sycl_version_information.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -MF CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/sysinfo.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textreader.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/textreader.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -MF CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/textwriter.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -MF CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/txtdump.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp
[ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_F.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_F.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_F.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_F.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp
[ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_F.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_F.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecEw_VdwLJ_VgrpF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp
[ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_F.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_F.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp
[ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_F.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_F.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_F.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_F.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_F.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_F.cpp
[ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_F.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_4xm/kernel_ElecRF_VdwLJ_VgrpF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_F.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_F.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_F.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_F.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJFSw_VgrpF.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_F.cpp
[ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJPSw_VgrpF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_F.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEwTwinCut_VdwLJ_VgrpF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_F.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombGeom_VgrpF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_F.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJCombLB_VgrpF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_F.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJEwCombGeom_VgrpF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_F.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJFSw_VgrpF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_F.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VF.cpp
[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJPSw_VgrpF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_F.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecEw_VdwLJ_VgrpF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_F.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_F.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_F.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_F.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VF.cpp
[ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_F.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTabTwinCut_VdwLJ_VgrpF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_F.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombGeom_VgrpF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_F.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJCombLB_VgrpF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_F.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_F.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJFSw_VgrpF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_F.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJPSw_VgrpF.cpp
[ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_F.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecQSTab_VdwLJ_VgrpF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_F.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombGeom_VgrpF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_F.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJCombLB_VgrpF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_F.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJEwCombGeom_VgrpF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_F.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJFSw_VgrpF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_F.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJPSw_VgrpF.cpp
[ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_F.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VF.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_simd_2xmm/kernel_ElecRF_VdwLJ_VgrpF.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/atomdata.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/atomdata.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_setup.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/benchmark/bench_setup.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/benchmark/bench_system.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/benchmark/bench_system.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/exclusionchecker.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/exclusionchecker.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/freeenergydispatch.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/freeenergydispatch.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/grid.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/grid.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/gridset.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/gridset.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernel_common.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernel_common.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kerneldispatch.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kerneldispatch.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_gpu_ref.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_reference/kernel_gpu_ref.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_reference/kernel_ref.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/kernels_reference/kernel_ref_prune.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/kernels_reference/kernel_ref_prune.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/nbnxm.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_geometry.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/nbnxm_geometry.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/nbnxm_setup.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/nbnxm_setup.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/pairlist.cpp
[ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlist_tuning.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/pairlist_tuning.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistparams.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/pairlistparams.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistset.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/pairlistset.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairlistwork.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/pairlistwork.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/pairsearch.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/pairsearch.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/prunekerneldispatch.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/prunekerneldispatch.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -MF CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o.d -o CMakeFiles/libgromacs.dir/nbnxm/simd_prune_kernel.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/simd_prune_kernel.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/cmdlinehelpcontext.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/cmdlinehelpmodule.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/cmdlinehelpwriter.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/cmdlineinit.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/cmdlinemodule.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/cmdlinemodulemanager.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/cmdlineoptionsmodule.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/cmdlineprogramcontext.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/cmdlineparser.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/filenm.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/pargs.cpp
[ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/shellcompletions.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/viewit.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/atomdistribution.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/box.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/box.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/cellsizes.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/collect.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/collect.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/computemultibodycutoffs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/computemultibodycutoffs.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/distribute.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/dlb.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/dlbtiming.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/domdec.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/domdec_constraints.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/domdec_network.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/domdec_setup.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/domdec_specatomcomm.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/dump.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/dump.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/domdec_vsite.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/ga2la.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/gpuhaloexchange_impl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/gpuhaloexchange_impl.cpp
[ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/localatomset.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/localatomsetdata.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/localatomsetmanager.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localtopology.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/localtopology.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/localtopologychecker.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/localtopologychecker.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/makebondedlinks.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/makebondedlinks.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/mdsetup.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/mdsetup.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/nsgrid.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/nsgrid.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/partition.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/partition.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/redistribute.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/reversetopology.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/reversetopology.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -MF CMakeFiles/libgromacs.dir/domdec/utility.cpp.o.d -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/utility.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -MF CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o.d -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/3dtransforms.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -MF CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o.d -o CMakeFiles/libgromacs.dir/math/coordinatetransformation.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/coordinatetransformation.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -MF CMakeFiles/libgromacs.dir/math/densityfit.cpp.o.d -o CMakeFiles/libgromacs.dir/math/densityfit.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/densityfit.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -MF CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o.d -o CMakeFiles/libgromacs.dir/math/densityfittingforce.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/densityfittingforce.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -MF CMakeFiles/libgromacs.dir/math/do_fit.cpp.o.d -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/do_fit.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -MF CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o.d -o CMakeFiles/libgromacs.dir/math/exponentialmovingaverage.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/exponentialmovingaverage.cpp
[ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o -MF CMakeFiles/libgromacs.dir/math/functions.cpp.o.d -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/functions.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -MF CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o.d -o CMakeFiles/libgromacs.dir/math/gausstransform.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/gausstransform.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/matrix.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/matrix.cpp.o -MF CMakeFiles/libgromacs.dir/math/matrix.cpp.o.d -o CMakeFiles/libgromacs.dir/math/matrix.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/matrix.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -MF CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o.d -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/invertmatrix.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -MF CMakeFiles/libgromacs.dir/math/neldermead.cpp.o.d -o CMakeFiles/libgromacs.dir/math/neldermead.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/neldermead.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -MF CMakeFiles/libgromacs.dir/math/nrjac.cpp.o.d -o CMakeFiles/libgromacs.dir/math/nrjac.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/nrjac.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/optimization.cpp.o -MF CMakeFiles/libgromacs.dir/math/optimization.cpp.o.d -o CMakeFiles/libgromacs.dir/math/optimization.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/optimization.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o -MF CMakeFiles/libgromacs.dir/math/utilities.cpp.o.d -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/utilities.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -MF CMakeFiles/libgromacs.dir/math/veccompare.cpp.o.d -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/veccompare.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -MF CMakeFiles/libgromacs.dir/math/vecdump.cpp.o.d -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/vecdump.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/awh_history.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/awh_history.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/commrec.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/commrec.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/checkpointdata.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/checkpointdata.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/df_history.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/energyhistory.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/energyhistory.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/forcebuffers.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/forcebuffers.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/group.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/group.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/iforceprovider.cpp
[ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/inputrec.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/interaction_const.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/interaction_const.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/md_enums.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/multipletimestepping.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/multipletimestepping.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/observableshistory.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/observablesreducer.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/observablesreducer.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/state.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/threaded_force_buffer.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/threaded_force_buffer.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/helpformat.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/helpmanager.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/helptopic.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/helpwritercontext.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/rstparser.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/boxutilities.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/com.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/com.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/mshift.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/pbc.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/pbc_simd.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/pbc_simd.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/pbcenums.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/pbcenums.cpp
[ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/pbcmethods.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/pbcmethods.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -MF CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o.d -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/rmpbc.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o -MF CMakeFiles/libgromacs.dir/random/seed.cpp.o.d -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/seed.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -MF CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o.d -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/tabulatednormaldistribution.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -MF CMakeFiles/libgromacs.dir/restraint/manager.cpp.o.d -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/manager.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -MF CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/restraintmdmodule.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -MF CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/cubicsplinetable.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -MF CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/forcetable.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -MF CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/quadraticsplinetable.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -MF CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o.d -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/splineutil.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -MF CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o.d -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/cyclecounter.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -MF CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o.d -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/wallcycle.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -MF CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o.d -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/walltime_accounting.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -MF CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/atomprop.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -MF CMakeFiles/libgromacs.dir/topology/atoms.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/atoms.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -MF CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/atomsbuilder.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o -MF CMakeFiles/libgromacs.dir/topology/block.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/block.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -MF CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/exclusionblocks.cpp
[ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -MF CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/forcefieldparameters.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o -MF CMakeFiles/libgromacs.dir/topology/idef.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/idef.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -MF CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/ifunc.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o -MF CMakeFiles/libgromacs.dir/topology/index.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/index.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -MF CMakeFiles/libgromacs.dir/topology/invblock.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/invblock.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -MF CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/mtop_atomloops.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/mtop_atomloops.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -MF CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/mtop_util.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -MF CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/residuetypes.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -MF CMakeFiles/libgromacs.dir/topology/symtab.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/symtab.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o -MF CMakeFiles/libgromacs.dir/topology/topology.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/topology.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -MF CMakeFiles/libgromacs.dir/topology/topsort.cpp.o.d -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/topsort.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -MF CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/energyframe.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -MF CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/trajectoryframe.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -MF CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o.d -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/swapcoords.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -MF CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o.d -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/edsam.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o -MF CMakeFiles/libgromacs.dir/imd/imd.cpp.o.d -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/imd.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -MF CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o.d -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/imdsocket.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -MF CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o.d -o CMakeFiles/libgromacs.dir/mimic/communicator_stub.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/communicator_stub.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -MF CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o.d -o CMakeFiles/libgromacs.dir/mimic/utilities.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/utilities.cpp
[ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/anadih.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/angle_correction.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/binsearch.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/cluster_methods.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/cluster_methods.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/cmat.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/dens_filter.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/dlist.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/eigio.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/fitahx.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_anaeig.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_analyze.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_angle.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_awh.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_bar.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_bundle.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_chi.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_cluster.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_clustsize.cpp
[ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_confrms.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_covar.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_current.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_density.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_densmap.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_densorder.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_dielectric.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_dipoles.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_disre.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_dos.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_dyecoupl.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_enemat.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_energy.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_filter.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_gyrate.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_h2order.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_hbond.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_helix.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_helixorient.cpp
[ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_hydorder.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_lie.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_make_edi.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_mdmat.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_mindist.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_nmens.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_nmeig.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_nmr.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_nmtraj.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_order.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_polystat.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_potential.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_principal.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_rama.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_rms.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_rmsdist.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_rmsf.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_rotacf.cpp
[ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_rotmat.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_saltbr.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_sans.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_saxs.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_sham.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_sigeps.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_sorient.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_spatial.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_spol.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_tcaf.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_traj.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_trjorder.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_vanhove.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_velacc.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_wham.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_wheel.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/gmx_xpm2ps.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/hxprops.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/nrama.cpp
[ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/nsfactor.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/powerspect.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/pp2shift.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/princ.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/sfactor.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/thermochemistry.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/add_par.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/calch.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/convparm.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/editconf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/editconf.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/fflibutil.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/gen_ad.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/gen_vsite.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/genconf.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/genhydro.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/genion.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/genion.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/genrestr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/genrestr.cpp
[ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/gmxcpp.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/gpp_atomtype.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/gpp_nextnb.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/grompp.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/h_db.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/hackblock.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/hizzie.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert_molecules.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/insert_molecules.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/massrepartitioning.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/massrepartitioning.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/nm2type.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/pdb2gmx.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/pdb2top.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/pgutil.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/readir.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/readpull.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/readrot.cpp
[ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/resall.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/solvate.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/specbond.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/ter_db.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/tomorse.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/topdirs.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/topio.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/toppush.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/topshake.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/toputil.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/vsite_parm.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/x2top.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/xlate.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -MF CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o.d -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/autocorr.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -MF CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o.d -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/crosscorr.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -MF CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o.d -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/expfit.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -MF CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o.d -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/gmx_lmcurve.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -MF CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o.d -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/integrate.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -MF CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o.d -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/manyautocorrelation.cpp
[ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -MF CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o.d -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/polynomials.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -MF CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o.d -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/statistics.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/abstractdata.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/analysisdata.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/arraydata.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/dataframe.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/datamodule.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/datamodulemanager.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/dataproxy.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/modules/average.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/datastorage.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/modules/displacement.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/modules/frameaverager.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/modules/histogram.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/modules/lifetime.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/modules/plot.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/coordinatefile.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/coordinatefile.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/frameconverters/register.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/frameconverters/register.cpp
[ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadaptercontainer.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/outputadaptercontainer.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/outputselector.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/outputadapters/outputselector.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setatoms.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/outputadapters/setatoms.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setforces.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/outputadapters/setforces.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setprecision.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/outputadapters/setprecision.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setstarttime.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/outputadapters/setstarttime.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/settimestep.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/outputadapters/settimestep.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/outputadapters/setvelocities.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/outputadapters/setvelocities.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -MF CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o.d -o CMakeFiles/libgromacs.dir/coordinateio/requirements.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/requirements.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/analysismodule.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/analysissettings.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/angle.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/convert_trj.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/convert_trj.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/distance.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/dssp.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/dssp.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/extract_cluster.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/extract_cluster.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/freevolume.cpp
[ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/gyrate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/gyrate.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/hbond.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/hbond.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/isotope.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/isotope.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/msd.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/msd.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/pairdist.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/rdf.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-sans.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/scattering-debye-sans.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/sasa.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye-saxs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/scattering-debye-saxs.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering-debye.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/scattering-debye.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scattering.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/scattering.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/scatteringfactors.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/scatteringfactors.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/select.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/modules/trajectory.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/runnercommon.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o -MF CMakeFiles/libgromacs.dir/tools/check.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/check.cpp
[ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -MF CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/convert_tpr.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o -MF CMakeFiles/libgromacs.dir/tools/dump.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/dump.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -MF CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/eneconv.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/eneconv.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -MF CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/make_ndx.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/make_ndx.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -MF CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/mk_angndx.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/mk_angndx.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -MF CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/pme_error.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/pme_error.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -MF CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/report_methods.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/report_methods.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -MF CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/trjcat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/trjcat.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -MF CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/trjconv.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/trjconv.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -MF CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o.d -o CMakeFiles/libgromacs.dir/tools/tune_pme.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/tune_pme.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/conformation_utilities.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/conformation_utilities.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/network.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/nrnb.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/boxdeformation.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/broadcaststructs.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/calc_verletbuf.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/calcmu.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/calcvir.cpp
[ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/checkpointhandler.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/compute_io.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/constr.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/constraint_gpu_helpers.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/constraint_gpu_helpers.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/constraintrange.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/coupling.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/dispersioncorrection.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/dispersioncorrection.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/ebin.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/enerdata_utils.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/enerdata_utils.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/energydrifttracker.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/energydrifttracker.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/energyoutput.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/energyoutput.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/expanded.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/expanded_internal.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/expanded_internal.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/force.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/force.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/forcerec.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/freeenergyparameters.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/freeenergyparameters.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/gmx_omp_nthreads.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/gpuforcereduction_impl_stubs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/gpuforcereduction_impl_stubs.cpp
[ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/groupcoord.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/lincs.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/md_support.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/mdatoms.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/mdebin_bar.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdgraph_gpu_impl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/mdgraph_gpu_impl.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/mdoutf.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/membed.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/perf_est.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/rbin.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/resethandler.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/rf_util.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/settle.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/shake.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/sighandler.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/sim_util.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/simulationsignal.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/splitter.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/stat.cpp
[ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/stophandler.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/tgroup.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/trajectory_writing.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/update.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_constrain_gpu_impl_stubs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/update_constrain_gpu_impl_stubs.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/update_vv.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/update_vv.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/updategroups.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/updategroupscog.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/vcm.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/vsite.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/wall.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -MF CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o.d -o CMakeFiles/libgromacs.dir/mdlib/wholemoleculetransform.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/wholemoleculetransform.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/electricfield.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/electricfield.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/awh.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/awh.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/bias.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/bias.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biasgrid.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/biasgrid.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biasparams.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/biasparams.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biassharing.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/biassharing.cpp
[ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biasstate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/biasstate.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/biaswriter.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/biaswriter.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/coordstate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/coordstate.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/correlationgrid.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/correlationgrid.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/correlationhistory.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/correlationhistory.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/correlationtensor.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/correlationtensor.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/histogramsize.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/histogramsize.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/pointstate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/pointstate.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/awh/read_params.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/awh/read_params.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfitting.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/densityfitting/densityfitting.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingamplitudelookup.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/densityfitting/densityfittingamplitudelookup.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingforceprovider.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/densityfitting/densityfittingforceprovider.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoptions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/densityfitting/densityfittingoptions.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingparameters.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/densityfitting/densityfittingparameters.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/densityfitting/densityfittingoutputprovider.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/densityfitting/densityfittingoutputprovider.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmminputgenerator.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/qmmm/qmmminputgenerator.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmtopologypreprocessor.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmtopologypreprocessor.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmtopologypreprocessor.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmtopologypreprocessor.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/qmmm/qmmmtopologypreprocessor.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmoptions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/qmmm/qmmmoptions.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmm.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/qmmm/qmmm.cpp
[ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/qmmm/qmmmforceprovider_stub.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/qmmm/qmmmforceprovider_stub.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsMDModule.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/colvars/colvarsMDModule.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsoptions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/colvars/colvarsoptions.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarspreprocessor.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/colvars/colvarspreprocessor.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarssimulationsparameters.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/colvars/colvarssimulationsparameters.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarsforceprovider.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/colvars/colvarsforceprovider.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -MF CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o.d -o CMakeFiles/libgromacs.dir/applied_forces/colvars/colvarproxygromacs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/colvars/colvarproxygromacs.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/bonded.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/bonded.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/disre.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/disre.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces_gpu_impl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/listed_forces_gpu_impl.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/listed_forces.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/listed_forces.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/listed_internal.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/listed_internal.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/manage_threading.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/manage_threading.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/orires.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/orires.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/pairs.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/pairs.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/position_restraints.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/position_restraints.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -MF CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o.d -o CMakeFiles/libgromacs.dir/listed_forces/restcbt.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/restcbt.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/calculate_spline_moduli.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/calculate_spline_moduli.cpp
[ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/ewald.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/ewald_utils.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/ewald_utils.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/long_range_correction.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/long_range_correction.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gather.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_gather.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_grid.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_grid.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_load_balancing.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_load_balancing.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_only.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_only.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_pp.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_pp.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_redistribute.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_redistribute.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_solve.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_solve.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spline_work.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_spline_work.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_spread.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_spread.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_gpu_program.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_pp_comm_gpu_impl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_pp_comm_gpu_impl.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_coordinate_receiver_gpu_impl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_coordinate_receiver_gpu_impl.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_force_sender_gpu_impl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_force_sender_gpu_impl.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -MF CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/ewald/pme_gpu_program_impl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/pme_gpu_program_impl.cpp
[ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -MF CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/calcgrid.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/fft.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/fft5d.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -MF CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/parallel_3dfft.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/fft_fftw3.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/clfftinitializer.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_stream_manager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/device_stream_manager.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/hostallocator.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/gpu_utils.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/gpueventsynchronizer_helpers.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/gpueventsynchronizer_helpers.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/nvshmem_utils.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/nvshmem_utils.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_context.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/device_context.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/device_stream.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/device_stream.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -MF CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o.d -o CMakeFiles/libgromacs.dir/gpu_utils/pmalloc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/pmalloc.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/cpuinfo.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/detecthardware.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/device_management_common.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/device_management_common.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/hardwaretopology.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/printhardware.cpp
[ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp  -march=skylake-avx512 -Wno-unused-command-line-argument -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/identifyavx512fmaunits.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/simd_support.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/simd_support.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o -MF CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o.d -o CMakeFiles/libgromacs.dir/hardware/device_management.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/device_management.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/legacymdrunoptions.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/legacysimulator.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/legacysimulator.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/md.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/md.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mdmodules.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/mdmodules.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/membedholder.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/membedholder.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/mimic.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/minimize.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/replicaexchange.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/rerun.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/runner.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/shellfc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/shellfc.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/simulationcontext.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationinput.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/simulationinput.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulationinputhandle.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/simulationinputhandle.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/simulatorbuilder.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/simulatorbuilder.cpp
[ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -MF CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/tpi.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/freeenergy.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/freeenergy.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/handlerestart.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/logging.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/logging.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodulesnotifiers.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/mdmodulesnotifiers.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/multisim.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/multisim.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/printtime.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/printtime.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -MF CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o.d -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/threadaffinity.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -MF CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o.d -o CMakeFiles/libgromacs.dir/mdtypes/state_propagator_data_gpu_impl.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/state_propagator_data_gpu_impl.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs/utility/baseversion-gen.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/checkpoint.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/confio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/confio.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/enxio.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/espio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/espio.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/filetypes.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/g96io.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/gmx_internal_xdr.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/gmxfio.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/gmxfio_xdr.cpp
[ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/groio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/groio.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/libxdrf.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/matio.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/md5.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/md5.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymap.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/mrcdensitymap.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/mrcdensitymapheader.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/mrcdensitymapheader.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/mrcserializer.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/mrcserializer.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/mtxio.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/oenv.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/pdbio.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/readinp.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/timecontrol.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/tngio.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/tpxio.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/trrio.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/trxio.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/warninp.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/writeps.cpp
[ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/xdrd.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/xtcio.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/xvgr.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -MF CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/centerofmass.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -MF CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/evaluate.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -MF CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/compiler.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -MF CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/indexutil.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/mempool.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -MF CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/nbsearch.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -MF CMakeFiles/libgromacs.dir/selection/params.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/params.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -MF CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/parsetree.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -MF CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/poscalc.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -MF CMakeFiles/libgromacs.dir/selection/position.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/position.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -MF CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/scanner_internal.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/selection.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/selectionoption.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/selectioncollection.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/selectionoptionbehavior.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/selectionoptionmanager.cpp
[ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/selelem.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/selhelp.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/selmethod.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/selvalue.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/sm_compare.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/sm_distance.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/sm_insolidangle.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/sm_keywords.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/sm_merge.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/sm_permute.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/sm_position.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/sm_same.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include 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-I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/sm_simple.cpp
[ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/analysisdata/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/applied_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/commandline/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/compat/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/coordinateio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/correlationfunctions/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fft/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/domdec/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/energyanalysis/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/essentialdynamics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/ewald/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxana/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxpreprocess/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/hardware/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/imd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/linearalgebra/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrun/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdrunutility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdspan/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mimic/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/modularsimulator/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/nbnxm/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/onlinehelp/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/options/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/random/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/restraint/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/statistics/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/swap/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tables/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/taskassignment/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/tools/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectory/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/trajectoryanalysis/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/tng_io/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/tng/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/colvars -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -Wno-cast-function-type-strict -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/selection/symrec.cpp
[ 96%] Linking CXX shared library ../../lib/libgromacs.so
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -Wl,--dependency-file=CMakeFiles/libgromacs.dir/link.d   -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgromacs.so.9 -o ../../lib/libgromacs.so.9.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp  -Wl,-rpath,:::::::::::::::: /lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lopenblas -lm -lm /usr/lib/gcc/x86_64-mageia-linux/14/libgomp.so /usr/lib64/libpthread.a /usr/lib64/libmuparser.so.2.3.4 -lmuparser /usr/lib64/liblmfit.so
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.9.0.0 ../../lib/libgromacs.so.9 ../../lib/libgromacs.so
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
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cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/programs /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/programs /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake "--color="
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[ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o
[ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/resourceassignment.cpp
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cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/context.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/context.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/context.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/context.cpp
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/exceptions.cpp
[ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/box.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/box.cpp.o -MF CMakeFiles/nblib.dir/box.cpp.o.d -o CMakeFiles/nblib.dir/box.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/box.cpp
[ 96%] Linking CXX executable ../../bin/gmx
[ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1
[ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -MF CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o.d -o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/gmxcalculatorcpu.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/gmxapi.cpp
[ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o
[ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/md.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/md.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/md.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/md.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/integrator.cpp.o -MF CMakeFiles/nblib.dir/integrator.cpp.o.d -o CMakeFiles/nblib.dir/integrator.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/integrator.cpp
[ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o
[ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/interactions.cpp.o -MF CMakeFiles/nblib.dir/interactions.cpp.o.d -o CMakeFiles/nblib.dir/interactions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/interactions.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/molecules.cpp.o -MF CMakeFiles/nblib.dir/molecules.cpp.o.d -o CMakeFiles/nblib.dir/molecules.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/molecules.cpp
[ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/mdmodule.cpp
[ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o
[ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -MF CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o.d -o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/nbnxmsetuphelpers.cpp
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/mdsignals.cpp
[ 96%] Building CXX object api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particlesequencer.cpp.o -MF CMakeFiles/nblib.dir/particlesequencer.cpp.o.d -o CMakeFiles/nblib.dir/particlesequencer.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/particlesequencer.cpp
[ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/session.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/session.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/session.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/session.cpp
[ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/status.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/status.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/status.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/status.cpp
[ 96%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/system.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/system.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/system.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/system.cpp
[ 98%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/version.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/version.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/version.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/version.cpp
/usr/bin/g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG   -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--dependency-file=CMakeFiles/gmx.dir/link.d CMakeFiles/gmx_objlib.dir/gmx.cpp.o CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/nonbonded_bench.cpp.o -o ../../bin/gmx  -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/lib: ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-mageia-linux/14/libgomp.so /usr/lib64/libpthread.a
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[ 98%] Built target gmx
[ 98%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/workflow.cpp
[ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/particletype.cpp.o -MF CMakeFiles/nblib.dir/particletype.cpp.o.d -o CMakeFiles/nblib.dir/particletype.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/particletype.cpp
[ 98%] Building CXX object api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_USE_VISIBILITY -Dgmxapi_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -isystem /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -MD -MT api/gmxapi/CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -MF CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o.d -o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/gmxapi/cpp/tpr.cpp
[ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/simulationstate.cpp.o -MF CMakeFiles/nblib.dir/simulationstate.cpp.o.d -o CMakeFiles/nblib.dir/simulationstate.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/simulationstate.cpp
[ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/topologyhelpers.cpp.o -MF CMakeFiles/nblib.dir/topologyhelpers.cpp.o.d -o CMakeFiles/nblib.dir/topologyhelpers.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/topologyhelpers.cpp
[ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/topology.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/topology.cpp.o -MF CMakeFiles/nblib.dir/topology.cpp.o.d -o CMakeFiles/nblib.dir/topology.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/topology.cpp
[ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/tpr.cpp.o -MF CMakeFiles/nblib.dir/tpr.cpp.o.d -o CMakeFiles/nblib.dir/tpr.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/tpr.cpp
[ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/virials.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/virials.cpp.o -MF CMakeFiles/nblib.dir/virials.cpp.o.d -o CMakeFiles/nblib.dir/virials.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/virials.cpp
[ 98%] Building CXX object api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/listed_forces/calculator.cpp
[100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/listed_forces/transformations.cpp
[100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/listed_forces/conversions.cpp
[100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -MF CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o.d -o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/listed_forces/convertGmxToNblib.cpp
[100%] Building CXX object api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/g++ -DGMX_DOUBLE=0 -DTMPI_USE_VISIBILITY -Dnblib_EXPORTS -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/src/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/fileio/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/math/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/utility/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/external/thread_mpi/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gmxlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdlib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pbcutil/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/pulling/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/topology/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/timing/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/listed_forces/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/mdtypes/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/gpu_utils/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src/gromacs/simd/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fPIC -fexcess-precision=fast -funroll-all-loops -mavx2 -mfma -Wno-missing-field-initializers -fopenmp -Wno-cast-function-type-strict -MD -MT api/nblib/CMakeFiles/nblib.dir/util/setup.cpp.o -MF CMakeFiles/nblib.dir/util/setup.cpp.o.d -o CMakeFiles/nblib.dir/util/setup.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/util/setup.cpp
[100%] Linking CXX shared library ../../lib/libgmxapi.so
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxapi.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -Wl,--dependency-file=CMakeFiles/gmxapi.dir/link.d   -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgmxapi.so.0 -o ../../lib/libgmxapi.so.0.4.0 CMakeFiles/gmxapi.dir/cpp/resourceassignment.cpp.o CMakeFiles/gmxapi.dir/cpp/context.cpp.o CMakeFiles/gmxapi.dir/cpp/exceptions.cpp.o CMakeFiles/gmxapi.dir/cpp/gmxapi.cpp.o CMakeFiles/gmxapi.dir/cpp/md.cpp.o CMakeFiles/gmxapi.dir/cpp/mdmodule.cpp.o CMakeFiles/gmxapi.dir/cpp/mdsignals.cpp.o CMakeFiles/gmxapi.dir/cpp/session.cpp.o CMakeFiles/gmxapi.dir/cpp/status.cpp.o CMakeFiles/gmxapi.dir/cpp/system.cpp.o CMakeFiles/gmxapi.dir/cpp/version.cpp.o CMakeFiles/gmxapi.dir/cpp/workflow.cpp.o CMakeFiles/gmxapi.dir/cpp/tpr.cpp.o  -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/lib: ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-mageia-linux/14/libgomp.so /usr/lib64/libpthread.a
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/gmxapi && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgmxapi.so.0.4.0 ../../lib/libgmxapi.so.0 ../../lib/libgmxapi.so
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[100%] Built target gmxapi
[100%] Linking CXX shared library ../../lib/libnblib_gmx.so
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/cmake -E cmake_link_script CMakeFiles/nblib.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -Wl,--dependency-file=CMakeFiles/nblib.dir/link.d   -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libnblib_gmx.so.0 -o ../../lib/libnblib_gmx.so.0.1.0 CMakeFiles/nblib.dir/box.cpp.o CMakeFiles/nblib.dir/gmxcalculatorcpu.cpp.o CMakeFiles/nblib.dir/integrator.cpp.o CMakeFiles/nblib.dir/interactions.cpp.o CMakeFiles/nblib.dir/molecules.cpp.o CMakeFiles/nblib.dir/nbnxmsetuphelpers.cpp.o CMakeFiles/nblib.dir/particlesequencer.cpp.o CMakeFiles/nblib.dir/particletype.cpp.o CMakeFiles/nblib.dir/simulationstate.cpp.o CMakeFiles/nblib.dir/topologyhelpers.cpp.o CMakeFiles/nblib.dir/topology.cpp.o CMakeFiles/nblib.dir/tpr.cpp.o CMakeFiles/nblib.dir/virials.cpp.o CMakeFiles/nblib.dir/listed_forces/calculator.cpp.o CMakeFiles/nblib.dir/listed_forces/transformations.cpp.o CMakeFiles/nblib.dir/listed_forces/conversions.cpp.o CMakeFiles/nblib.dir/listed_forces/convertGmxToNblib.cpp.o CMakeFiles/nblib.dir/util/setup.cpp.o  -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/lib: -lm ../../lib/libgromacs.so.9.0.0 -lm /usr/lib/gcc/x86_64-mageia-linux/14/libgomp.so /usr/lib64/libpthread.a -lmuparser /usr/lib64/libmuparser.so.2.3.4
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib && /usr/bin/cmake -E cmake_symlink_library ../../lib/libnblib_gmx.so.0.1.0 ../../lib/libnblib_gmx.so.0 ../../lib/libnblib_gmx.so
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[100%] Built target nblib
/usr/bin/gmake  -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/depend
/usr/bin/gmake  -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/depend
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/samples /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib/samples /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib/samples/CMakeFiles/argon-forces-integration.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5 /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/samples /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib/samples /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib/samples/CMakeFiles/methane-water-integration.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
/usr/bin/gmake  -f api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build.make api/nblib/samples/CMakeFiles/argon-forces-integration.dir/build
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
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/usr/bin/gmake  -f api/nblib/samples/CMakeFiles/methane-water-integration.dir/build.make api/nblib/samples/CMakeFiles/methane-water-integration.dir/build
[100%] Building CXX object api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -MF CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o.d -o CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/samples/argon-forces-integration.cpp
gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[100%] Building CXX object api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib/samples && /usr/bin/g++ -DGMX_DOUBLE=0 -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/legacy/include -I/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/legacy/include -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG -std=c++17 -fopenmp -MD -MT api/nblib/samples/CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -MF CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o.d -o CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o -c /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/api/nblib/samples/methane-water-integration.cpp
[100%] Linking CXX executable ../../../bin/methane-water-integration
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/methane-water-integration.dir/link.txt --verbose=1
[100%] Linking CXX executable ../../../bin/argon-forces-integration
cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/api/nblib/samples && /usr/bin/cmake -E cmake_link_script CMakeFiles/argon-forces-integration.dir/link.txt --verbose=1
/usr/bin/g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG   -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--dependency-file=CMakeFiles/methane-water-integration.dir/link.d "CMakeFiles/methane-water-integration.dir/methane-water-integration.cpp.o" -o ../../../bin/methane-water-integration  -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-mageia-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/lib
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[100%] Built target methane-water-integration
/usr/bin/g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -DNDEBUG   -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,--dependency-file=CMakeFiles/argon-forces-integration.dir/link.d "CMakeFiles/argon-forces-integration.dir/argon-forces-integration.cpp.o" -o ../../../bin/argon-forces-integration  -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/lib ../../../lib/libnblib_gmx.so.0.1.0 -lm /usr/lib/gcc/x86_64-mageia-linux/14/libgomp.so /usr/lib64/libpthread.a -Wl,-rpath-link,/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/lib
gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
[100%] Built target argon-forces-integration
gmake[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build'
/usr/bin/cmake -E cmake_progress_start /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/build/CMakeFiles 0

+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.2f2ro6
+ umask 022
+ cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ '[' 1 -eq 1 ']'
+ '[' /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT '!=' / ']'
+ rm -rf /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT
++ dirname /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT
+ mkdir -p /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ mkdir /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT
+ CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full '
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd gromacs-2024.5
+ '[' 1 -eq 1 ']'
+ DESTDIR=/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT
+ /usr/bin/cmake --install build
-- Install configuration: "RelWithDebInfo"
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/COPYING
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/README.tutor
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/README_FreeEnergyModifications.txt
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/atom_nom.tbl
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/watermodels.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip3p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.arn
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ions.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip4pew.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spce.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/forcefield.doc
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.arn
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/urea.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/spc.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/dna.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/atomtypes.atp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.arn
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/rna.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/tip5p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/aminoacids.vsd
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99.ff/ffbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/residues.dtd
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/sfactor.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/table6-10.xvg
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/ss.map
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/dgsolv.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/tip4p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/ffG43a1.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/ffG53a5.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/spc216.gro
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/ps.m2p
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/elements.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/random.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/vdwradii.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/table6-9.xvg
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/tip3p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/atommass.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa-n.tst
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/specbond.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/watermodels.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip3p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.arn
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ions.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip4pew.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spce.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/forcefield.doc
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.arn
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/urea.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/spc.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/dna.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/atomtypes.atp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.arn
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/rna.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/tip5p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/aminoacids.vsd
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber03.ff/ffbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/scatteringfactors.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/tip4p.gro
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/refi_aa.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/ffoplsaa.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b
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-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/cb-shift.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ions.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spce.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/spc.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ions.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spce.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/spc.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/nsfactor.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ions.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spce.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/spc.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/phbres.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/tip5p.gro
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/flexspce.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/electroneg.dat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/gromacs/top/flexwat-ferguson.itp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/GMXRC
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/GMXRC.bash
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/GMXRC.zsh
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/GMXRC.csh
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/demux.pl
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/xplor2gmx.pl
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libgmxapi.so.0.4.0
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libgmxapi.so.0
-- Set non-toolchain portion of runtime path of "/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libgmxapi.so.0.4.0" to "$ORIGIN/../lib64"
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libgmxapi.so
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi.cmake
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-relwithdebinfo.cmake
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-config-version.cmake
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/cmake/gmxapi/gmxapi-config.cmake
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/gromacsfwd.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/gmxapicompat.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/context.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/gmxapi.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/session
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/session/resources.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/session.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/status.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/compat
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/compat/mdparams.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/compat/tpr.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/system.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/md.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/md
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/md/mdsignals.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/md/mdmodule.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/exceptions.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/mpi
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/mpi/gmxapi_mpi.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/version.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gmxapi/mpi/resourceassignment.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0
-- Set non-toolchain portion of runtime path of "/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libnblib_gmx.so.0.1.0" to "$ORIGIN/../lib64"
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libnblib_gmx.so
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/topology.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/particlesequencer.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/nbnxmsetuphelpers.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/integrator.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/tpr.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/interactions.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/simulationstate.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/kerneloptions.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/exception.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/particletype.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/basicdefinitions.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/gmxcalculatorcpu.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/listed_forces
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/listed_forces/definitions.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/listed_forces/bondtypes.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/listed_forces/calculator.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/nblib.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/molecules.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/box.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/vector.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/util
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/util/setup.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/util/traits.hpp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/nblib/util/util.hpp
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/include/gromacs/mdrun/simulationinputhandle.h
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libgromacs.so.9.0.0
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libgromacs.so.9
-- Set non-toolchain portion of runtime path of "/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libgromacs.so.9.0.0" to "$ORIGIN/../lib64"
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/libgromacs.so
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/lib64/pkgconfig/libgromacs.pc
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/cmake/gromacs/libgromacs.cmake
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/cmake/gromacs/libgromacs-relwithdebinfo.cmake
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-config.cmake
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-config-version.cmake
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/cmake/gromacs/gromacs-hints.cmake
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/gmx
-- Set non-toolchain portion of runtime path of "/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/gmx" to "$ORIGIN/../lib64"
-- Up-to-date: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/gmx-completion.bash
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/bin/gmx-completion-gmx.bash
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-dos.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-report-methods.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-density.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-dump.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-covar.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-confrms.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-solvate.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-lie.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-tcaf.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-saxs-legacy.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-rama.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-chi.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-distance.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-densmap.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-convert-tpr.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-make_edi.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-vanhove.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-spol.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-nmr.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-x2top.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-dyecoupl.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-trjorder.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-select.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-xpm2ps.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-nonbonded-benchmark.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-msd.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-wheel.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-pme_error.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-velacc.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-analyze.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-gyrate.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-densorder.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-polystat.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-tune_pme.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-genion.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-bundle.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-saltbr.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-trjcat.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-extract-cluster.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-awh.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-angle.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-rotmat.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-helixorient.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-spatial.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-dssp.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-editconf.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-dipoles.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-hbond-legacy.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-enemat.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-potential.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-help.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-sham.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-h2order.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-sans-legacy.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-nmtraj.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-genconf.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-hydorder.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-anaeig.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-mdrun.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-sasa.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-energy.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-pdb2gmx.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-gyrate-legacy.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-rms.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-sorient.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-rotacf.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-gangle.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-dielectric.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-eneconv.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-genrestr.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-grompp.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-nmeig.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-trajectory.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-trjconv.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-traj.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-rdf.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-hbond.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-scattering.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-order.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-rmsdist.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-mk_angndx.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-check.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-mindist.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-rmsf.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-clustsize.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-bar.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-convert-trj.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-freevolume.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-cluster.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-make_ndx.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-wham.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-insert-molecules.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-mdmat.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-helix.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-sigeps.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-principal.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-disre.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-filter.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-pairdist.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-current.1
-- Installing: /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/man/man1/gmx-nmens.1
+ /usr/bin/find-debuginfo -j16 --strict-build-id -m -i --build-id-seed 2024.5-1.mga10 --unique-debug-suffix -2024.5-1.mga10.x86_64 --unique-debug-src-base gromacs-2024.5-1.mga10.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5
find-debuginfo: starting

Extracting debug info from 4 files
DWARF-compressing 4 files
sepdebugcrcfix: Updated 4 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/gromacs-2024.5-1.mga10.x86_64
cpio: build/src/gromacs/parser.h: Cannot stat: No such file or directory
cpio: build/src/gromacs/parser.y: Cannot stat: No such file or directory
cpio: build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory
cpio: build/src/gromacs/selection/parser.cpp: Cannot stat: No such file or directory
cpio: build/src/gromacs/selection/parser.h: Cannot stat: No such file or directory
cpio: build/src/gromacs/selection/parser.y: Cannot stat: No such file or directory
cpio: build/src/gromacs/selection/scanner.cpp: Cannot stat: No such file or directory
cpio: build/src/gromacs/selection/scanner.l: Cannot stat: No such file or directory
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ '[' -n '' ']'
+ /usr/share/spec-helper/clean_files
+ '[' -n '' ']'
+ /usr/share/spec-helper/compress_files .xz
+ '[' -n '' ']'
+ /usr/share/spec-helper/relink_symlinks
+ '[' -n '' ']'
+ /usr/share/spec-helper/clean_perl
+ '[' -n '' ']'
+ /usr/share/spec-helper/lib_symlinks
+ '[' -n '' ']'
+ /usr/share/spec-helper/gprintify
+ '[' -n '' ']'
+ /usr/share/spec-helper/fix_mo
+ '[' -n '' ']'
+ /usr/share/spec-helper/fix_pamd
+ '[' -n '' ']'
+ /usr/share/spec-helper/remove_info_dir
+ '[' -n '' ']'
+ /usr/share/spec-helper/fix_eol
+ '[' -n '' ']'
+ /usr/share/spec-helper/check_desktop_files
+ '[' -n '' ']'
+ /usr/share/spec-helper/check_elf_files
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/bin/GMXRC.zsh is executable but has no shebang, removing executable bit
*** WARNING: ./usr/bin/GMXRC is executable but has no shebang, removing executable bit
*** WARNING: ./usr/bin/GMXRC.csh is executable but has no shebang, removing executable bit
*** WARNING: ./usr/bin/GMXRC.bash is executable but has no shebang, removing executable bit
mangling shebang in /usr/bin/demux.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/xplor2gmx.pl from /usr/bin/env perl to #!/usr/bin/perl
*** WARNING: ./usr/src/debug/gromacs-2024.5-1.mga10.x86_64/src/gromacs/gpu_utils/nvshmem_utils.cpp is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/gromacs-2024.5-1.mga10.x86_64/src/gromacs/gpu_utils/nvshmem_utils.h is executable but has no shebang, removing executable bit
+ env -u SOURCE_DATE_EPOCH /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j16
+ /usr/lib/rpm/redhat/brp-python-hardlink
Reading /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: gromacs-2024.5-1.mga10.x86_64
Executing(%doc): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.jKtpAC
+ umask 022
+ cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ cd gromacs-2024.5
+ DOCDIR=/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/doc/gromacs
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/doc/gromacs
+ cp -pr /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/AUTHORS /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/doc/gromacs
+ cp -pr /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/README /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/doc/gromacs
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.7NVKLC
+ umask 022
+ cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ cd gromacs-2024.5
+ LICENSEDIR=/home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/licenses/gromacs
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/licenses/gromacs
+ cp -pr /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/gromacs-2024.5/COPYING /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT/usr/share/licenses/gromacs
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: gromacs = 2024.5-1.mga10 gromacs(x86-64) = 2024.5-1.mga10 libgmxapi.so.0()(64bit) libgromacs.so.9()(64bit) libnblib_gmx.so.0()(64bit)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libfftw3f.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libgromacs.so.9()(64bit) libhwloc.so.15()(64bit) liblmfit.so.8()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libmuparser.so.2()(64bit) libopenblas.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) perl(warnings) perl-base >= 2:5.40.1
Processing files: gromacs-devel-2024.5-1.mga10.x86_64
Provides: cmake(gmxapi) = 0.4.0 cmake(gromacs) = 2024.5 devel(libgmxapi(64bit)) devel(libgromacs(64bit)) devel(libnblib_gmx(64bit)) gromacs-devel = 2024.5-1.mga10 gromacs-devel(x86-64) = 2024.5-1.mga10 pkgconfig(libgromacs) = 2024.5
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: devel(libfftw3f(64bit)) devel(libgcc_s(64bit)) devel(libgomp(64bit)) devel(libgromacs(64bit)) devel(libhwloc(64bit)) devel(liblmfit(64bit)) devel(libm(64bit)) devel(libmuparser(64bit)) devel(libopenblas(64bit)) devel(libstdc++(64bit)) pkgconfig pkgconfig(fftw3f)
Processing files: gromacs-debugsource-2024.5-1.mga10.x86_64
Provides: gromacs-debugsource = 2024.5-1.mga10 gromacs-debugsource(x86-64) = 2024.5-1.mga10
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: gromacs-debuginfo-2024.5-1.mga10.x86_64
Provides: debuginfo(build-id) = 60ccf35d4fd608ed91215840505cbb0b1a015c96 debuginfo(build-id) = 878d55063d64e5154ee27964045887d5cc57302f debuginfo(build-id) = 8833192200717397240b9884e61bbb96e085934d debuginfo(build-id) = 8cfd37ecee655489e15a7035bbc117db586d3b85 gromacs-debuginfo = 2024.5-1.mga10 gromacs-debuginfo(x86-64) = 2024.5-1.mga10
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: gromacs-debugsource(x86-64) = 2024.5-1.mga10
Checking for unpackaged file(s): /usr/lib/rpm/check-files /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build/BUILDROOT
Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/gromacs-devel-2024.5-1.mga10.x86_64.rpm
Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/gromacs-debugsource-2024.5-1.mga10.x86_64.rpm
Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/gromacs-2024.5-1.mga10.x86_64.rpm
Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/gromacs-debuginfo-2024.5-1.mga10.x86_64.rpm
Executing(rmbuild): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.BVjbd9
+ umask 022
+ cd /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ test -d /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ rm -rf /home/pterjan/rpmbuild/BUILD/gromacs-2024.5-build
+ RPM_EC=0
++ jobs -p
+ exit 0
D: [iurt_root_command] Success!