D: [iurt_root_command] chroot Building target platforms: x86_64 Building for target x86_64 Installing /home/pterjan/rpmbuild/SRPMS/R-base-4.4.2-3.mga10.src.rpm Executing(%mkbuilddir): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.tOtAr7 + umask 022 + cd /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + test -d /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + /usr/bin/rm -rf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + /usr/bin/mkdir -p /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + /usr/bin/mkdir -p /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.UulxqL + umask 022 + cd /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + cd /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + rm -rf R-4.4.2 + /usr/lib/rpm/rpmuncompress -x /home/pterjan/rpmbuild/SOURCES/R-4.4.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd R-4.4.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/R-2.15.3-menu.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/R-4.4.2-roman.patch + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/R-4.4.2-roman-tests.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.jV4hLr + umask 022 + cd /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd R-4.4.2 + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' ++ type -p xdg-open + export R_BROWSER=/usr/bin/xdg-open + R_BROWSER=/usr/bin/xdg-open ++ type -p xdg-open + export R_PDFVIEWER=/usr/bin/xdg-open + R_PDFVIEWER=/usr/bin/xdg-open + export R_PRINTCMD=lpr + R_PRINTCMD=lpr + export 'JAVA_HOME=%{java_home}' + JAVA_HOME='%{java_home}' + unset DISPLAY + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + CONFIGURE_TOP=. + '[' 1 = 1 ']' ++ find . -name config.guess -o -name config.sub + for i in $(find ${CONFIGURE_TOP} -name config.guess -o -name config.sub) ++ basename ./tools/config.guess + '[' -f /usr/lib/rpm/mageia/config.guess ']' ++ basename ./tools/config.guess + cp -af /usr/lib/rpm/mageia/config.guess ./tools/config.guess + for i in $(find ${CONFIGURE_TOP} -name config.guess -o -name config.sub) ++ basename ./tools/config.sub + '[' -f /usr/lib/rpm/mageia/config.sub ']' ++ basename ./tools/config.sub + cp -af /usr/lib/rpm/mageia/config.sub ./tools/config.sub + /usr/lib/rpm/mageia/force-as-needed-for-shared-lib-in-libtool Forcing -Wl,--as-needed in configure/libtool to workaround libtool bug (cf http://lists.gnu.org/archive/html/libtool-patches/2004-06/msg00002.html) + /usr/lib/rpm/mageia/fix-libtool-ltmain-from-overlinking + /usr/lib/rpm/mageia/fix-libtool-from-moving-options-after-libs . Fixing libtool inside configure to pass -Wl,xxx options before libraries + /usr/lib/rpm/mageia/fix-dlsearch-path-in-libtool-for-multilib . lib64 Forcing run-time library search path definition in configure to prevent libtool from adding rpath for standard directories (configure was generated with libtool without support for autodetection) + ./configure --host=x86_64-mageia-linux-gnu --build=x86_64-mageia-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-tcltk --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --with-cairo --with-libpng --with-jpeglib --with-pcre2 --with-system-tre=yes --with-ICU --with-readline --disable-BLAS-shlib --with-lapack --with-blas --enable-threads=pth --enable-R-profiling --enable-R-shlib --disable-lto configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... x86_64-mageia-linux-gnu checking host system type... x86_64-mageia-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /usr/bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... /usr/bin/gtar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 using default browser ... /usr/bin/xdg-open checking for /usr/bin/xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /usr/bin/pkg-config checking for x86_64-mageia-linux-gnu-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking for sys/time.h... yes checking for sys/param.h... yes checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking for x86_64-mageia-linux-gnu-gfortran... no checking for x86_64-mageia-linux-gnu-g95... no checking for x86_64-mageia-linux-gnu-xlf95... no checking for x86_64-mageia-linux-gnu-f95... no checking for x86_64-mageia-linux-gnu-fort... no checking for x86_64-mageia-linux-gnu-ifort... no checking for x86_64-mageia-linux-gnu-ifc... no checking for x86_64-mageia-linux-gnu-efc... no checking for x86_64-mageia-linux-gnu-pgfortran... no checking for x86_64-mageia-linux-gnu-pgf95... no checking for x86_64-mageia-linux-gnu-lf95... no checking for x86_64-mageia-linux-gnu-ftn... no checking for x86_64-mageia-linux-gnu-nagfor... no checking for x86_64-mageia-linux-gnu-xlf90... no checking for x86_64-mageia-linux-gnu-f90... no checking for x86_64-mageia-linux-gnu-pgf90... no checking for x86_64-mageia-linux-gnu-pghpf... no checking for x86_64-mageia-linux-gnu-epcf90... no checking for x86_64-mageia-linux-gnu-g77... no checking for x86_64-mageia-linux-gnu-xlf... no checking for x86_64-mageia-linux-gnu-f77... no checking for x86_64-mageia-linux-gnu-frt... no checking for x86_64-mageia-linux-gnu-pgf77... no checking for x86_64-mageia-linux-gnu-cf77... no checking for x86_64-mageia-linux-gnu-fort77... no checking for x86_64-mageia-linux-gnu-fl32... no checking for x86_64-mageia-linux-gnu-af77... no checking for gfortran... gfortran checking whether the compiler supports GNU Fortran... yes checking whether gfortran accepts -g... yes checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for x86_64-mageia-linux-gnu-gcc... no checking for x86_64-mageia-linux-gnu-objcc... no checking for x86_64-mageia-linux-gnu-objc... no checking for x86_64-mageia-linux-gnu-cc... no checking for x86_64-mageia-linux-gnu-CC... no checking for x86_64-mageia-linux-gnu-clang... no checking for gcc... gcc checking whether the compiler supports GNU Objective C... yes checking whether gcc accepts -g... yes checking whether gcc -std=gnu17 is a C17 compiler... yes checking whether gcc -std=gnu23 is a C23 compiler... yes checking whether gcc -std=gnu90 is a C90 compiler... yes checking whether gcc -std=gnu99 is a C99 compiler... yes checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-mageia-linux-gnu file names to x86_64-mageia-linux-gnu format... func_convert_file_noop checking how to convert x86_64-mageia-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-mageia-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-mageia-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-mageia-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for x86_64-mageia-linux-gnu-strip... no checking for strip... strip checking for x86_64-mageia-linux-gnu-ranlib... no checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-mageia-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking for readline/history.h... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking for fcntl.h... yes checking for glob.h... yes checking for grp.h... yes checking for pwd.h... yes checking for sched.h... yes checking for strings.h... (cached) yes checking for sys/resource.h... yes checking for sys/select.h... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking for sys/time.h... (cached) yes checking for sys/times.h... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking for utime.h... yes checking for arpa/inet.h... yes checking for elf.h... yes checking for features.h... yes checking for floatingpoint.h... no checking for langinfo.h... yes checking for netdb.h... yes checking for netinet/in.h... yes checking for sys/param.h... (cached) yes checking for stdalign.h... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking for limits.h... yes checking for locale.h... yes checking for stdarg.h... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking for gcc options needed to detect all undeclared functions... none needed checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for egrep -e... (cached) /usr/bin/grep -E checking for GNU C library with version >= 2... yes checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/x86_64-mageia-linux/14 -L/usr/lib/gcc/x86_64-mageia-linux/14/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-mageia-linux/14/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/lib/gcc/x86_64-mageia-linux/14 -L/usr/lib/gcc/x86_64-mageia-linux/14/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-mageia-linux/14/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... yes, using $(OBJC) -MM checking for ObjC runtime library... checking whether gcc accepts -fobjc-exceptions... yes checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... /usr/bin/xmkmf checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking whether g++ supports C++17 features with -std=gnu++17... yes checking whether g++ supports C++20 features with -std=gnu++20... yes checking whether g++ supports C++23 features with -std=gnu++23... yes checking whether g++ -std=gnu++17 can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking for g++ -std=gnu++17 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwnam exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for stpcpy... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime, gmtime, localtime work correctly in 2020... yes checking whether mktime sets errno... yes checking whether mktime works correctly after 2037... yes checking whether mktime works correctly before 1902... yes checking whether mktime works correctly in 1969... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes configure: searching for an external BLAS configure: searching for BLAS in default libraries checking for dgemm_... no configure: searching for OpenBLAS checking for sgemm_ in -lopenblas... yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for wchar.h... (cached) yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking whether wcwidth exists and is declared... yes checking whether wcswidth exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for /usr/lib64/tclConfig.sh... /usr/lib64/tclConfig.sh checking for /usr/lib64/tkConfig.sh... /usr/lib64/tkConfig.sh checking for tcl.h... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking for rpc/types.h... no checking for tirpc/rpc/types.h... no checking for XDR support... no checking for inflateInit2_ in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for libdeflate.h... no checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for tre_regncompb in -ltre... yes checking for tre/tre.h... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 8.12.1 checking for curl/curl.h... yes checking if libcurl is >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for gcc option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for x86_64-mageia-linux-gnu-ranlib... ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for pthread.h... yes checking for pthread_kill in -lpthread... yes checking for pthread_rwlock_t... yes checking for multithread API to use... posix checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... (cached) yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 3.8.2, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --disable-dependency-tracking configure: WARNING: --with-libdeflate-compression requires libdeflate R is now configured for x86_64-mageia-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full Fortran fixed-form compiler: gfortran -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full Default C++ compiler: g++ -std=gnu++17 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full C++11 compiler: g++ -std=gnu++11 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full C++14 compiler: g++ -std=gnu++14 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full C++17 compiler: g++ -std=gnu++17 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full C++20 compiler: g++ -std=gnu++20 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full C++23 compiler: g++ -std=gnu++23 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full Fortran free-form compiler: gfortran -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full Obj-C compiler: gcc -g -O2 -fobjc-exceptions Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(OpenBLAS), LAPACK(in blas), tre, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling Capabilities skipped: Options not enabled: shared BLAS, memory profiling Recommended packages: yes + /usr/bin/make -O -j16 V=1 VERBOSE=1 make[1]: Nothing to be done for 'R'. make[1]: Nothing to be done for 'R'. make[2]: Nothing to be done for 'R'. make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/scripts' creating src/scripts/R.fe make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/scripts' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/scripts' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include' mkdir -p -- ../../include make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include/R_ext' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' making xdr.d from xdr.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' making xdr_mem.d from xdr_mem.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' making xdr_float.d from xdr_float.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' making xdr_stdio.d from xdr_stdio.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c xdr_float.c -o xdr_float.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c xdr.c -o xdr.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c xdr_mem.c -o xdr_mem.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c xdr_stdio.c -o xdr_stdio.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' ar -cr libxdr.a xdr.o xdr_float.o xdr_mem.o xdr_stdio.o ranlib libxdr.a make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' making maxcol.d from maxcol.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' making integrate.d from integrate.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' making optim.d from optim.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' making pretty.d from pretty.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' making interv.d from interv.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' making uncmin.d from uncmin.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c interv.c -o interv.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c maxcol.c -o maxcol.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pretty.c -o pretty.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dpbfa.f -o dpbfa.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dpbsl.f -o dpbsl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dpodi.f -o dpodi.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dpofa.f -o dpofa.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dchdc.f -o dchdc.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dposl.f -o dposl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dpoco.f -o dpoco.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dqrls.f -o dqrls.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dqrdc.f -o dqrdc.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dqrdc2.f -o dqrdc2.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dqrutl.f -o dqrutl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dtrsl.f -o dtrsl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dqrsl.f -o dqrsl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dtrco.f -o dtrco.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dsvdc.f -o dsvdc.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c integrate.c -o integrate.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c uncmin.c -o uncmin.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c optim.c -o optim.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making mlutils.d from mlutils.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making d1mach.d from d1mach.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making i1mach.d from i1mach.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making fmax2.d from fmax2.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making fmin2.d from fmin2.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making fprec.d from fprec.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making fround.d from fround.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making ftrunc.d from ftrunc.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making sign.d from sign.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making imax2.d from imax2.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making fsign.d from fsign.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making imin2.d from imin2.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making chebyshev.d from chebyshev.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making lgammacor.d from lgammacor.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making log1p.d from log1p.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making beta.d from beta.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making gamma_cody.d from gamma_cody.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making gammalims.d from gammalims.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making stirlerr.d from stirlerr.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making gamma.d from gamma.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making lbeta.d from lbeta.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making bd0.d from bd0.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making lgamma.d from lgamma.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making polygamma.d from polygamma.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making cospi.d from cospi.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making bessel_i.d from bessel_i.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making bessel_j.d from bessel_j.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making bessel_k.d from bessel_k.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making bessel_y.d from bessel_y.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making snorm.d from snorm.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making choose.d from choose.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making sexp.d from sexp.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dgamma.d from dgamma.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pgamma.d from pgamma.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qgamma.d from qgamma.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rgamma.d from rgamma.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dbeta.d from dbeta.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pbeta.d from pbeta.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qbeta.d from qbeta.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rbeta.d from rbeta.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dunif.d from dunif.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dnorm.d from dnorm.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making punif.d from punif.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qunif.d from qunif.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making runif.d from runif.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pnorm.d from pnorm.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rnorm.d from rnorm.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qnorm.d from qnorm.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dlnorm.d from dlnorm.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making plnorm.d from plnorm.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qlnorm.d from qlnorm.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pf.d from pf.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making df.d from df.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rlnorm.d from rlnorm.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qf.d from qf.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rf.d from rf.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dnf.d from dnf.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dt.d from dt.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pt.d from pt.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rt.d from rt.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dchisq.d from dchisq.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qt.d from qt.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dnt.d from dnt.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pchisq.d from pchisq.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qchisq.d from qchisq.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rnchisq.d from rnchisq.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dbinom.d from dbinom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rchisq.d from rchisq.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qbinom.d from qbinom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pbinom.d from pbinom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rmultinom.d from rmultinom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rbinom.d from rbinom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dcauchy.d from dcauchy.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pcauchy.d from pcauchy.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qcauchy.d from qcauchy.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rcauchy.d from rcauchy.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qexp.d from qexp.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dexp.d from dexp.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pexp.d from pexp.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rexp.d from rexp.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pgeom.d from pgeom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qgeom.d from qgeom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dgeom.d from dgeom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rgeom.d from rgeom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dhyper.d from dhyper.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making phyper.d from phyper.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qhyper.d from qhyper.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rhyper.d from rhyper.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dnbinom.d from dnbinom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pnbinom.d from pnbinom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qnbinom.d from qnbinom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qnbinom_mu.d from qnbinom_mu.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rnbinom.d from rnbinom.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dpois.d from dpois.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qpois.d from qpois.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making ppois.d from ppois.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rpois.d from rpois.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dweibull.d from dweibull.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pweibull.d from pweibull.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qweibull.d from qweibull.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rweibull.d from rweibull.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dlogis.d from dlogis.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making plogis.d from plogis.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making rlogis.d from rlogis.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qlogis.d from qlogis.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dnchisq.d from dnchisq.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pnchisq.d from pnchisq.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qnchisq.d from qnchisq.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making dnbeta.d from dnbeta.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pnbeta.d from pnbeta.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qnbeta.d from qnbeta.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pnf.d from pnf.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making pnt.d from pnt.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qnf.d from qnf.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qnt.d from qnt.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making ptukey.d from ptukey.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making qtukey.d from qtukey.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making toms708.d from toms708.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making wilcox.d from wilcox.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' making signrank.d from signrank.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mlutils.c -o mlutils.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c i1mach.c -o i1mach.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c d1mach.c -o d1mach.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fmin2.c -o fmin2.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fmax2.c -o fmax2.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fprec.c -o fprec.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fround.c -o fround.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ftrunc.c -o ftrunc.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sign.c -o sign.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fsign.c -o fsign.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c imax2.c -o imax2.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c imin2.c -o imin2.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c log1p.c -o log1p.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lgammacor.c -o lgammacor.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gammalims.c -o gammalims.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chebyshev.c -o chebyshev.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c stirlerr.c -o stirlerr.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gamma.c -o gamma.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c beta.c -o beta.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bd0.c -o bd0.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cospi.c -o cospi.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lgamma.c -o lgamma.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lbeta.c -o lbeta.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dgamma.c -o dgamma.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gamma_cody.c -o gamma_cody.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sexp.c -o sexp.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rgamma.c -o rgamma.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_y.c -o bessel_y.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_k.c -o bessel_k.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c choose.c -o choose.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dunif.c -o dunif.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qunif.c -o qunif.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rbeta.c -o rbeta.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c punif.c -o punif.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnorm.c -o dnorm.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c snorm.c -o snorm.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dbeta.c -o dbeta.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnorm.c -o pnorm.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c runif.c -o runif.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rnorm.c -o rnorm.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dlnorm.c -o dlnorm.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_j.c -o bessel_j.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plnorm.c -o plnorm.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qbeta.c -o qbeta.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnorm.c -o qnorm.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rlnorm.c -o rlnorm.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pbeta.c -o pbeta.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qgamma.c -o qgamma.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rf.c -o rf.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c df.c -o df.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pt.c -o pt.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnt.c -o dnt.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c polygamma.c -o polygamma.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_i.c -o bessel_i.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qlnorm.c -o qlnorm.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pf.c -o pf.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qf.c -o qf.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnf.c -o dnf.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dt.c -o dt.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rt.c -o rt.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dchisq.c -o dchisq.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qchisq.c -o qchisq.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pchisq.c -o pchisq.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qt.c -o qt.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rnchisq.c -o rnchisq.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pbinom.c -o pbinom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pgamma.c -o pgamma.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rchisq.c -o rchisq.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qbinom.c -o qbinom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rmultinom.c -o rmultinom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dbinom.c -o dbinom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dcauchy.c -o dcauchy.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pcauchy.c -o pcauchy.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qcauchy.c -o qcauchy.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rcauchy.c -o rcauchy.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dexp.c -o dexp.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qexp.c -o qexp.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rbinom.c -o rbinom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pexp.c -o pexp.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rexp.c -o rexp.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dgeom.c -o dgeom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qgeom.c -o qgeom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rgeom.c -o rgeom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnbinom.c -o pnbinom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c phyper.c -o phyper.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dpois.c -o dpois.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dhyper.c -o dhyper.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qhyper.c -o qhyper.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnbinom.c -o qnbinom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rhyper.c -o rhyper.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ppois.c -o ppois.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pweibull.c -o pweibull.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pgeom.c -o pgeom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dweibull.c -o dweibull.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rweibull.c -o rweibull.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnbinom_mu.c -o qnbinom_mu.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rnbinom.c -o rnbinom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnbinom.c -o dnbinom.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qlogis.c -o qlogis.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qpois.c -o qpois.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rpois.c -o rpois.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qweibull.c -o qweibull.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dlogis.c -o dlogis.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rlogis.c -o rlogis.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnbeta.c -o dnbeta.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plogis.c -o plogis.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnchisq.c -o dnchisq.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnf.c -o qnf.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnf.c -o pnf.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnbeta.c -o pnbeta.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnchisq.c -o qnchisq.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnt.c -o qnt.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnbeta.c -o qnbeta.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qtukey.c -o qtukey.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnt.c -o pnt.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnchisq.c -o pnchisq.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ptukey.c -o ptukey.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c signrank.c -o signrank.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c wilcox.c -o wilcox.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c toms708.c -o toms708.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' config.status: creating src/unix/Makefile make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' making Rembedded.d from Rembedded.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' making dynload.d from dynload.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' making system.d from system.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' making sys-unix.d from sys-unix.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' making sys-std.d from sys-std.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' making X11.d from X11.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dynload.c -o dynload.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Rembedded.c -o Rembedded.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c X11.c -o X11.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c system.c -o system.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sys-std.c -o sys-std.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sys-unix.c -o sys-unix.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -DR_HOME='"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2"' \ -o Rscript ./Rscript.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' config.status: creating src/main/Makefile make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making Rdynload.d from Rdynload.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making CommandLineArgs.d from CommandLineArgs.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making Renviron.d from Renviron.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making RNG.d from RNG.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making agrep.d from agrep.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making altclasses.d from altclasses.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making altrep.d from altrep.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making apply.d from apply.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making arithmetic.d from arithmetic.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making array.d from array.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making attrib.d from attrib.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making bind.d from bind.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making builtin.d from builtin.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making character.d from character.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making clippath.d from clippath.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making coerce.d from coerce.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making colors.d from colors.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making complex.d from complex.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making connections.d from connections.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making cum.d from cum.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making context.d from context.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making dcf.d from dcf.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making debug.d from debug.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making datetime.d from datetime.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making deparse.d from deparse.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making dotcode.d from dotcode.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making devices.d from devices.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making dounzip.d from dounzip.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making dstruct.d from dstruct.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making duplicate.d from duplicate.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making edit.d from edit.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making engine.d from engine.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making envir.d from envir.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making errors.d from errors.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making eval.d from eval.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making flexiblas.d from flexiblas.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making gevents.d from gevents.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making format.d from format.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making gram.d from gram.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making gram-ex.d from gram-ex.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making graphics.d from graphics.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making grep.d from grep.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making identical.d from identical.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making inlined.d from inlined.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making internet.d from internet.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making inspect.d from inspect.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making iosupport.d from iosupport.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making lapack.d from lapack.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making list.d from list.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making machine.d from machine.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making localecharset.d from localecharset.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making logic.d from logic.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making mask.d from mask.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making main.d from main.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making mapply.d from mapply.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making match.d from match.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making memory.d from memory.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making objects.d from objects.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making names.d from names.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making paste.d from paste.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making patterns.d from patterns.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making options.d from options.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making plot.d from plot.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making plot3d.d from plot3d.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making plotmath.d from plotmath.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making printarray.d from printarray.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making print.d from print.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making platform.d from platform.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making printvector.d from printvector.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making printutils.d from printutils.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making radixsort.d from radixsort.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making qsort.d from qsort.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making random.d from random.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making raw.d from raw.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making registration.d from registration.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making relop.d from relop.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making rlocale.d from rlocale.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making saveload.d from saveload.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making seq.d from seq.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making scan.d from scan.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making sort.d from sort.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making subscript.d from subscript.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making serialize.d from serialize.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making source.d from source.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making sprintf.d from sprintf.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making startup.d from startup.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making subassign.d from subassign.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making subset.d from subset.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making summary.d from summary.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making split.d from split.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making sysutils.d from sysutils.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making unique.d from unique.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making times.d from times.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making util.d from util.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making version.d from version.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making g_fontdb.d from g_fontdb.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making g_alab_her.d from g_alab_her.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making g_her_glyph.d from g_her_glyph.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making Rmain.d from Rmain.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making g_cntrlify.d from g_cntrlify.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making alloca.d from alloca.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making strdup.d from strdup.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making strncasecmp.d from strncasecmp.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' making mkdtemp.d from mkdtemp.c make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c CommandLineArgs.c -o CommandLineArgs.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c clippath.c -o clippath.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c colors.c -o colors.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Renviron.c -o Renviron.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c apply.c -o apply.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c altrep.c -o altrep.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c RNG.c -o RNG.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Rdynload.c -o Rdynload.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cum.c -o cum.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agrep.c -o agrep.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dcf.c -o dcf.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c context.c -o context.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c debug.c -o debug.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c complex.c -o complex.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dstruct.c -o dstruct.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c altclasses.c -o altclasses.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c builtin.c -o builtin.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c devices.c -o devices.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c edit.c -o edit.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c attrib.c -o attrib.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c character.c -o character.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c duplicate.c -o duplicate.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dounzip.c -o dounzip.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c deparse.c -o deparse.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c flexiblas.c -o flexiblas.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bind.c -o bind.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gram-ex.c -o gram-ex.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c graphics.c -o graphics.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gevents.c -o gevents.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c format.c -o format.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c identical.c -o identical.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dotcode.c -o dotcode.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c array.c -o array.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c internet.c -o internet.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lapack.c -o lapack.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c inlined.c -o inlined.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c iosupport.c -o iosupport.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c errors.c -o errors.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c datetime.c -o datetime.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c localecharset.c -o localecharset.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mask.c -o mask.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c inspect.c -o inspect.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c list.c -o list.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c machine.c -o machine.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mapply.c -o mapply.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coerce.c -o coerce.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c names.c -o names.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c match.c -o match.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c logic.c -o logic.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c engine.c -o engine.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c patterns.c -o patterns.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plot.c -o plot.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c options.c -o options.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c arithmetic.c -o arithmetic.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c main.c -o main.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c paste.c -o paste.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plot3d.c -o plot3d.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qsort.c -o qsort.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c objects.c -o objects.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c print.c -o print.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c printvector.c -o printvector.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c registration.c -o registration.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c printutils.c -o printutils.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c printarray.c -o printarray.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rlocale.c -o rlocale.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c envir.c -o envir.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c random.c -o random.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c platform.c -o platform.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c raw.c -o raw.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c connections.c -o connections.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c split.c -o split.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c startup.c -o startup.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c source.c -o source.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plotmath.c -o plotmath.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c grep.c -o grep.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c scan.c -o scan.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c radixsort.c -o radixsort.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c times.c -o times.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c saveload.c -o saveload.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gram.c -o gram.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sprintf.c -o sprintf.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c version.c -o version.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c g_fontdb.c -o g_fontdb.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c g_alab_her.c -o g_alab_her.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c g_cntrlify.c -o g_cntrlify.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c xxxpr.f -o xxxpr.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c g_her_glyph.c -o g_her_glyph.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c relop.c -o relop.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c subscript.c -o subscript.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c memory.c -o memory.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c serialize.c -o serialize.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sysutils.c -o sysutils.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c seq.c -o seq.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c subset.c -o subset.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sort.c -o sort.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c summary.c -o summary.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c util.c -o util.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c subassign.c -o subassign.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c unique.c -o unique.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c eval.c -o eval.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -shared -fopenmp -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o clippath.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o flexiblas.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o machine.o main.o mapply.o mask.o match.o memory.o names.o objects.o options.o paste.o patterns.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/xdr/libxdr.a -lopenblas -lgfortran -lm -lquadmath -lreadline -ltre -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/bin/exec make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Rmain.c -o Rmain.o make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o R.bin Rmain.o -lR make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' making Rsock.d from Rsock.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' making Rhttpd.d from Rhttpd.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' making internet.d from internet.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' making sock.d from sock.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' making libcurl.d from libcurl.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' making Lapack.d from Lapack.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' making rotated.d from rotated.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' making rbitmap.d from rbitmap.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' making sockconn.d from sockconn.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' making devX11.d from devX11.c make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ../../main/flexiblas.c -o flexiblas.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c sock.c -o sock.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c sockconn.c -o sockconn.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c internet.c -o internet.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c Rsock.c -o Rsock.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' gcc -I/usr/include/libpng16 -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/uuid -I/usr/include/json-c -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rbitmap.c -o rbitmap.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fvisibility=hidden -c libcurl.c -o libcurl.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o sock.o sockconn.o -lcurl -lR make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/modules make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Lapack.c -o Lapack.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' gcc -I/usr/include/libpng16 -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/uuid -I/usr/include/json-c -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rotated.c -o rotated.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o lapack.so Lapack.o flexiblas.o -lR -lopenblas -lgfortran -lm -lquadmath make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' gcc -I/usr/include/libpng16 -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/uuid -I/usr/include/json-c -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dataentry.c -o dataentry.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' gcc -I/usr/include/libpng16 -I/usr/include/webp -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/uuid -I/usr/include/json-c -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c devX11.c -o devX11.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lpng16 -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' mkdir -p -- ../../library make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/profile' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/translations' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/base' building package 'base' make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/base' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/base' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making text.d from text.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making init.d from init.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making Rmd5.d from Rmd5.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making md5.d from md5.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making signals.d from signals.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making install.d from install.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making http.d from http.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making getfmts.d from getfmts.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making gramRd.d from gramRd.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making gramLatex.d from gramLatex.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' making pdscan.d from pdscan.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c text.c -o text.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c install.c -o install.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c http.c -o http.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pdscan.c -o pdscan.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Rmd5.c -o Rmd5.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c signals.c -o signals.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c getfmts.c -o getfmts.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c md5.c -o md5.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gramLatex.c -o gramLatex.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gramRd.c -o gramRd.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o pdscan.o -L../../../../lib -lR make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[6]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/compiler' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/compiler' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/compiler' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/base' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tools' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' mkdir -p -- ../../../library/utils/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' making init.d from init.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' making size.d from size.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' making io.d from io.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' making sock.d from sock.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' making hashtab.d from hashtab.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' making stubs.d from stubs.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' making utils.d from utils.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c utils.c -o utils.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sock.c -o sock.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c stubs.c -o stubs.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c hashtab.c -o hashtab.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c size.c -o size.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c io.c -o io.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o utils.so init.o io.o size.o sock.o stubs.o utils.o hashtab.o -L../../../../lib -lR make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[6]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/utils' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices' mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/fonts/Roboto mkdir -p -- ../../../library/grDevices/fonts/Montserrat/static mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making axis_scales.d from axis_scales.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making chull.d from chull.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making devices.d from devices.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making init.d from init.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making stubs.d from stubs.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making group.d from group.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making colors.d from colors.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making patterns.d from patterns.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making clippath.d from clippath.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making mask.d from mask.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making devCairo.d from devCairo.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making devPicTeX.d from devPicTeX.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making devPS.d from devPS.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' making devQuartz.d from devQuartz.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c axis_scales.c -o axis_scales.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c patterns.c -o patterns.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c clippath.c -o clippath.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c stubs.c -o stubs.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c devCairo.c -o devCairo.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mask.c -o mask.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c group.c -o group.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chull.c -o chull.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c devQuartz.c -o devQuartz.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c devPicTeX.c -o devPicTeX.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c devices.c -o devices.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c colors.c -o colors.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c devPS.c -o devPS.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o clippath.o patterns.o mask.o group.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[6]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[6]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src' make[7]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[7]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src/cairo' make[9]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/libmount -I/usr/include/uuid -I/usr/include/json-c -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/harfbuzz -I/usr/include/cairo -I/usr/include/libxml2 -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/usr/include/pixman-1 -I/usr/include/libpng16 -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cairoBM.c -o cairoBM.o make[9]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src/cairo' make[9]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src/cairo' gcc -shared -L"../../../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lz -lcairo -lpng16 -L"../../../../../lib" -lR -lm make[9]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices/src/cairo' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grDevices' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' making init.d from init.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' making graphics.d from graphics.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' making par.d from par.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' making plot.d from plot.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' making base.d from base.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' making plot3d.d from plot3d.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' making stem.d from stem.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c stem.c -o stem.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c base.c -o base.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c par.c -o par.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c graphics.c -o graphics.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plot3d.c -o plot3d.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plot.c -o plot.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[6]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/graphics' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making init.d from init.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making kmeans.d from kmeans.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making ansari.d from ansari.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making bandwidths.d from bandwidths.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making chisqsim.d from chisqsim.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making d2x2xk.d from d2x2xk.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making fexact.d from fexact.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making kendall.d from kendall.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making ks.d from ks.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making line.d from line.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making smooth.d from smooth.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making swilk.d from swilk.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making prho.d from prho.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making ksmooth.d from ksmooth.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making loessc.d from loessc.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making monoSpl.d from monoSpl.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making isoreg.d from isoreg.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making Srunmed.d from Srunmed.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making dblcen.d from dblcen.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making distance.d from distance.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making hclust-utils.d from hclust-utils.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making nls.d from nls.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making rWishart.d from rWishart.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making HoltWinters.d from HoltWinters.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making PPsum.d from PPsum.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making arima.d from arima.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making burg.d from burg.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making filter.d from filter.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making mAR.d from mAR.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making pacf.d from pacf.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making starma.d from starma.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making port.d from port.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making family.d from family.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making sbart.d from sbart.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making approx.d from approx.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making loglin.d from loglin.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making massdist.d from massdist.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making lm.d from lm.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making lowess.d from lowess.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making splines.d from splines.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making deriv.d from deriv.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making cov.d from cov.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making complete_cases.d from complete_cases.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making fft.d from fft.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making fourier.d from fourier.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making optim.d from optim.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making integrate.d from integrate.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making random.d from random.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making optimize.d from optimize.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making model.d from model.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making distn.d from distn.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making zeroin.d from zeroin.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making rcont.d from rcont.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' making influence.d from influence.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c d2x2xk.c -o d2x2xk.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ansari.c -o ansari.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chisqsim.c -o chisqsim.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c kendall.c -o kendall.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c line.c -o line.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c prho.c -o prho.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bandwidths.c -o bandwidths.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c swilk.c -o swilk.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ksmooth.c -o ksmooth.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c monoSpl.c -o monoSpl.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c isoreg.c -o isoreg.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c kmeans.c -o kmeans.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dblcen.c -o dblcen.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c hclust-utils.c -o hclust-utils.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c loessc.c -o loessc.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c smooth.c -o smooth.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c distance.c -o distance.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c HoltWinters.c -o HoltWinters.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c burg.c -o burg.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c PPsum.c -o PPsum.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rWishart.c -o rWishart.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c nls.c -o nls.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ks.c -o ks.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c family.c -o family.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Srunmed.c -o Srunmed.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sbart.c -o sbart.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c massdist.c -o massdist.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c loglin.c -o loglin.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c approx.c -o approx.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c port.c -o port.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c filter.c -o filter.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pacf.c -o pacf.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lm.c -o lm.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c splines.c -o splines.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c complete_cases.c -o complete_cases.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lowess.c -o lowess.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c zeroin.c -o zeroin.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c integrate.c -o integrate.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fourier.c -o fourier.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rcont.c -o rcont.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bvalue.f -o bvalue.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c influence.c -o influence.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bvalus.f -o bvalus.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bsplvd.f -o bsplvd.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fft.c -o fft.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qsbart.f -o qsbart.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sgram.f -o sgram.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mAR.c -o mAR.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c starma.c -o starma.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sinerp.f -o sinerp.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sslvrg.f -o sslvrg.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c optimize.c -o optimize.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c stxwx.f -o stxwx.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c eureka.f -o eureka.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c optim.c -o optim.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c random.c -o random.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c hclust.f -o hclust.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lminfl.f -o lminfl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cov.c -o cov.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c kmns.f -o kmns.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c stl.f -o stl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c deriv.c -o deriv.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c distn.c -o distn.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c arima.c -o arima.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c loessf.f -o loessf.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fexact.c -o fexact.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ppr.f -o ppr.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c model.c -o model.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -msse2 -mfpmath=sse -c portsrc.f -o portsrc.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -lopenblas -lgfortran -lm -lquadmath -L../../../../lib -lR make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[6]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/datasets' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/datasets' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' making init.d from init.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' making methods_list_dispatch.d from methods_list_dispatch.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' making slot.d from slot.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' making class_support.d from class_support.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' making tests.d from tests.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' making utils.d from utils.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c slot.c -o slot.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c do_substitute_direct.c -o do_substitute_direct.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c class_support.c -o class_support.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c tests.c -o tests.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c utils.c -o utils.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c methods_list_dispatch.c -o methods_list_dispatch.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[6]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/methods' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making clippath.d from clippath.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making grid.d from grid.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making gpar.d from gpar.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making just.d from just.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making mask.d from mask.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making matrix.d from matrix.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making layout.d from layout.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making path.d from path.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making register.d from register.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making state.d from state.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making viewport.d from viewport.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making unit.d from unit.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making util.d from util.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' making typeset.d from typeset.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c just.c -o just.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c clippath.c -o clippath.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c register.c -o register.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mask.c -o mask.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c typeset.c -o typeset.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c matrix.c -o matrix.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c path.c -o path.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c state.c -o state.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c util.c -o util.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c viewport.c -o viewport.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gpar.c -o gpar.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c layout.c -o layout.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c unit.c -o unit.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c grid.c -o grid.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o grid.so clippath.o gpar.o grid.o just.o layout.o mask.o matrix.o path.o register.o state.o typeset.o unit.o util.o viewport.o -L../../../../lib -lR make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[6]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/grid' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines/src' making splines.d from splines.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c splines.c -o splines.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o splines.so splines.o -L../../../../lib -lR make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines/src' make[6]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/splines' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats4' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats4' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/stats4' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' making init.d from init.c make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' making tcltk_unix.d from tcltk_unix.c make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' making tcltk.d from tcltk.c make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c tcltk_unix.c -o tcltk_unix.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c tcltk.c -o tcltk.o make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/tcltk' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' making init.d from init.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' making rngstream.d from rngstream.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' making fork.d from fork.c make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rngstream.c -o rngstream.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fork.c -o fork.o make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' make[5]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[5]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' make[6]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel/src' make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/parallel' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' installing parsed NAMESPACE files make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[1]: Nothing to be done for 'R'. you should 'make docs' now ... make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc' creating doc/NEWS make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2' configuring Java ... *** JAVA_HOME is not a valid path, ignoring Java interpreter : /usr/bin/java Java version : 21.0.6 Java home path : /usr/lib/jvm/java-21-openjdk-21.0.6.0.7-1.mga10.x86_64 Java compiler : /usr/bin/javac Java headers gen.: Java archive tool: /usr/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[2]: Entering directory '/tmp/Rjavareconf.eA7Uft' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/lib/jvm/java-21-openjdk-21.0.6.0.7-1.mga10.x86_64/include -I/usr/lib/jvm/java-21-openjdk-21.0.6.0.7-1.mga10.x86_64/include/linux -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c conftest.c -o conftest.o gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o conftest.so conftest.o -L/usr/lib/jvm/java-21-openjdk-21.0.6.0.7-1.mga10.x86_64/lib/server -ljvm -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[2]: Leaving directory '/tmp/Rjavareconf.eA7Uft' JAVA_HOME : /usr/lib/jvm/java-21-openjdk-21.0.6.0.7-1.mga10.x86_64 Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2 Done. make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc' creating doc/NEWS.pdf make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' creating doc/manual/version.texi make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' creating doc/manual/R-FAQ.html R-FAQ.texi:73: warning: no htmlxref.cnf entry found for `dir' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' 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R-ints.texi:48: warning: no htmlxref.cnf entry found for `dir' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' creating doc/manual/R-admin.html R-admin.texi:50: warning: no htmlxref.cnf entry found for `dir' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... building/updating vignettes for package 'stats' ... processing 'reshape.Rnw' make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' creating doc/manual/R-exts.html R-exts.texi:50: warning: no htmlxref.cnf entry found for `dir' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' installing parsed Rd make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' tcltk make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' compiler make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' stats4 make[3]: Leaving directory 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stats make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' base make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' building/updating package metadata ... make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' writing package indices make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package MASS make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package lattice make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package codetools make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package foreign make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package KernSmooth make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package rpart make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package nnet make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package spatial make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (codetools) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpoVpsXb/R.INSTALL1a1fd1772f1adb/nnet/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c nnet.c -o nnet.o make[3]: Leaving directory '/tmp/RtmpoVpsXb/R.INSTALL1a1fd1772f1adb/nnet/src' make[3]: Entering directory '/tmp/RtmpoVpsXb/R.INSTALL1a1fd1772f1adb/nnet/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o nnet.so nnet.o -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpoVpsXb/R.INSTALL1a1fd1772f1adb/nnet/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' using Fortran compiler: 'GNU Fortran (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c blkest.f -o blkest.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cp.f -o cp.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dgefa.f -o dgefa.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dgedi.f -o dgedi.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c linbin.f -o linbin.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dgesl.f -o dgesl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c linbin2D.f -o linbin2D.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rlbin.f -o rlbin.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c locpoly.f -o locpoly.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sdiag.f -o sdiag.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sstdiag.f -o sstdiag.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lopenblas -lgfortran -lm -lquadmath -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpjNmppR/R.INSTALL1a1f1b35b74e74/KernSmooth/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpBzpNG4/R.INSTALL1a1ff722be5b36/spatial/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpBzpNG4/R.INSTALL1a1ff722be5b36/spatial/src' make[3]: Entering directory '/tmp/RtmpBzpNG4/R.INSTALL1a1ff722be5b36/spatial/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pps.c -o pps.o make[3]: Leaving directory '/tmp/RtmpBzpNG4/R.INSTALL1a1ff722be5b36/spatial/src' make[3]: Entering directory '/tmp/RtmpBzpNG4/R.INSTALL1a1ff722be5b36/spatial/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c krc.c -o krc.o make[3]: Leaving directory '/tmp/RtmpBzpNG4/R.INSTALL1a1ff722be5b36/spatial/src' make[3]: Entering directory '/tmp/RtmpBzpNG4/R.INSTALL1a1ff722be5b36/spatial/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o spatial.so init.o krc.o pps.o -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpBzpNG4/R.INSTALL1a1ff722be5b36/spatial/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Rdbfwrite.c -o Rdbfwrite.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c file-handle.c -o file-handle.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Rdbfread.c -o Rdbfread.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c avl.c -o avl.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c format.c -o format.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c minitab.c -o minitab.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c R_systat.c -o R_systat.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c spss.c -o spss.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c SASxport.c -o SASxport.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sfm-read.c -o sfm-read.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dbfopen.c -o dbfopen.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c stataread.c -o stataread.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pfm-read.c -o pfm-read.o make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' make[3]: Entering directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpCzdASQ/R.INSTALL1a1ef8691a5ce2/foreign/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c anova.c -o anova.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c anovapred.c -o anovapred.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c branch.c -o branch.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bsplit.c -o bsplit.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fix_cp.c -o fix_cp.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c free_tree.c -o free_tree.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c choose_surg.c -o choose_surg.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c graycode.c -o graycode.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c make_cp_list.c -o make_cp_list.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c insert_split.c -o insert_split.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c make_cp_table.c -o make_cp_table.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c nodesplit.c -o nodesplit.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c partition.c -o partition.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c print_tree.c -o print_tree.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mysort.c -o mysort.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rpartexp2.c -o rpartexp2.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pred_rpart.c -o pred_rpart.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rpartexp.c -o rpartexp.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rpart.c -o rpart.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rpcountup.c -o rpcountup.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c poisson.c -o poisson.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rpart_callback.c -o rpart_callback.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rundown2.c -o rundown2.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rundown.c -o rundown.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rpmatrix.c -o rpmatrix.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gini.c -o gini.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c usersplit.c -o usersplit.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c xval.c -o xval.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c surrogate.c -o surrogate.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c xpred.c -o xpred.o make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' make[3]: Entering directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmplZQ30w/R.INSTALL1a1fcd72d1994a/rpart/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpGKyPCD/R.INSTALL1a1e3945fdcb4d/MASS/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lqs.c -o lqs.o make[3]: Leaving directory '/tmp/RtmpGKyPCD/R.INSTALL1a1e3945fdcb4d/MASS/src' make[3]: Entering directory '/tmp/RtmpGKyPCD/R.INSTALL1a1e3945fdcb4d/MASS/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c MASS.c -o MASS.o make[3]: Leaving directory '/tmp/RtmpGKyPCD/R.INSTALL1a1e3945fdcb4d/MASS/src' make[3]: Entering directory '/tmp/RtmpGKyPCD/R.INSTALL1a1e3945fdcb4d/MASS/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o MASS.so MASS.o lqs.o -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpGKyPCD/R.INSTALL1a1e3945fdcb4d/MASS/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package cluster make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package class make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/Rtmptph2tK/R.INSTALL1a59327a0386e4/class/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c class.c -o class.o make[3]: Leaving directory '/tmp/Rtmptph2tK/R.INSTALL1a59327a0386e4/class/src' make[3]: Entering directory '/tmp/Rtmptph2tK/R.INSTALL1a59327a0386e4/class/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o class.so class.o -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/Rtmptph2tK/R.INSTALL1a59327a0386e4/class/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpbvKJkn/R.INSTALL1a1e6d1678e0e0/lattice/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpbvKJkn/R.INSTALL1a1e6d1678e0e0/lattice/src' make[3]: Entering directory '/tmp/RtmpbvKJkn/R.INSTALL1a1e6d1678e0e0/lattice/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c threeDplot.c -o threeDplot.o make[3]: Leaving directory '/tmp/RtmpbvKJkn/R.INSTALL1a1e6d1678e0e0/lattice/src' make[3]: Entering directory '/tmp/RtmpbvKJkn/R.INSTALL1a1e6d1678e0e0/lattice/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o lattice.so init.o threeDplot.o -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpbvKJkn/R.INSTALL1a1e6d1678e0e0/lattice/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (lattice) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package Matrix make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package nlme make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' using Fortran compiler: 'GNU Fortran (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dysta.f -o dysta.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c daisy.f -o daisy.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sildist.c -o sildist.o make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mona.c -o mona.o make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c spannel.c -o spannel.o make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c twins.c -o twins.o make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fanny.c -o fanny.o make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c clara.c -o clara.o make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pam.c -o pam.o make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' make[3]: Entering directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpILIwQp/R.INSTALL1a594e2aeab831/cluster/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (cluster) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' using Fortran compiler: 'GNU Fortran (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chol.f -o chol.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gnls.c -o gnls.o make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c nlOptimizer.c -o nlOptimizer.o make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pythag.c -o pythag.o make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c matrix.c -o matrix.o make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pdMat.c -o pdMat.o make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c nlme.c -o nlme.o make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gfortran -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rs.f -o rs.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c corStruct.c -o corStruct.o make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c nlmefit.c -o nlmefit.o make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' make[3]: Entering directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/Rtmp3PkyZX/R.INSTALL1a67327b3865ac/nlme/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nlme) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c attrib.c -o attrib.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cs-etc.c -o cs-etc.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c Csparse.c -o Csparse.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c kappa.c -o kappa.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c objects.c -o objects.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c expm.c -o expm.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cholmod-etc.c -o cholmod-etc.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c perm.c -o perm.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c determinant.c -o determinant.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c utils.c -o utils.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' cd SuiteSparse/CHOLMOD && /usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cholmod-common.c -o cholmod-common.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' cd SuiteSparse/CCOLAMD && /usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c factor.c -o factor.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' cd SuiteSparse/CAMD && /usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c solve.c -o solve.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' cd SuiteSparse/COLAMD && /usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_1.c -o Source/camd_1.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l1.c -o Source/camd_l1.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c vector.c -o vector.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c matmult.c -o matmult.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' cd SuiteSparse/AMD && /usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c subassign.c -o subassign.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' cd SuiteSparse/CXSparse && /usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_1.c -o Source/amd_1.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c idz.c -o idz.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' cd SuiteSparse/SuiteSparse_config && /usr/bin/make clean all CC="gcc" CPPFLAGS="-I/usr/local/include -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -I\"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include\" -DNDEBUG -DNPRINT -DNTIMER" CFLAGS="-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c utils-R.c -o utils-R.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/COLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/colamd.c -o Source/colamd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/COLAMD' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bind.c -o bind.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_add.c -o Source/cs_add.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l1.c -o Source/amd_l1.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/COLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/colamd_version.c -o Source/colamd_version.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/COLAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_add.c -o Source/cs_dl_add.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_aat.c -o Source/amd_aat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_add.c -o Source/cs_ci_add.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_2.c -o Source/camd_2.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/SuiteSparse_config' gcc -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c SuiteSparse_config.c -o SuiteSparse_config.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/SuiteSparse_config' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/COLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/colamd_l.c -o Source/colamd_l.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/COLAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/SuiteSparse_config' rm -f SuiteSparse_config.a ar -cr SuiteSparse_config.a SuiteSparse_config.o ranlib SuiteSparse_config.a make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/SuiteSparse_config' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_aat.c -o Source/amd_l_aat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_add.c -o Source/cs_cl_add.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l2.c -o Source/amd_l2.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CCOLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/ccolamd.c -o Source/ccolamd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CCOLAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_aat.c -o Source/camd_aat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/COLAMD' rm -f COLAMD.a ar -cr COLAMD.a Source/colamd.o Source/colamd_l.o Source/colamd_version.o ranlib COLAMD.a make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/COLAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_control.c -o Source/amd_control.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_control.c -o Source/amd_l_control.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c validity.c -o validity.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CCOLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/ccolamd_version.c -o Source/ccolamd_version.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CCOLAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_defaults.c -o Source/amd_defaults.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_2.c -o Source/amd_2.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l_aat.c -o Source/camd_l_aat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_defaults.c -o Source/amd_l_defaults.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_dump.c -o Source/amd_dump.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_control.c -o Source/camd_control.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_dump.c -o Source/amd_l_dump.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l2.c -o Source/camd_l2.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_defaults.c -o Source/camd_defaults.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l_control.c -o Source/camd_l_control.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l_defaults.c -o Source/camd_l_defaults.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_amd.c -o Source/cs_dl_amd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Check/cholmod_read.c -o Check/cholmod_read.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_dump.c -o Source/camd_dump.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_info.c -o Source/amd_info.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l_dump.c -o Source/camd_l_dump.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_amd.c -o Source/cs_amd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_info.c -o Source/amd_l_info.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Check/cholmod_l_read.c -o Check/cholmod_l_read.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_info.c -o Source/camd_info.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Check/cholmod_check.c -o Check/cholmod_check.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l_info.c -o Source/camd_l_info.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_order.c -o Source/amd_order.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_order.c -o Source/camd_order.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_amd.c -o Source/cs_ci_amd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_chol.c -o Source/cs_chol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_amd.c -o Source/cs_cl_amd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_amd.c -o Cholesky/cholmod_amd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_amd.c -o Cholesky/cholmod_l_amd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Check/cholmod_write.c -o Check/cholmod_write.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_chol.c -o Source/cs_dl_chol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_postorder.c -o Source/camd_postorder.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_order.c -o Source/amd_l_order.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l_order.c -o Source/camd_l_order.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_chol.c -o Source/cs_ci_chol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l_postorder.c -o Source/camd_l_postorder.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_colamd.c -o Cholesky/cholmod_colamd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_post_tree.c -o Source/amd_post_tree.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_chol.c -o Source/cs_cl_chol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_preprocess.c -o Source/camd_preprocess.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Check/cholmod_l_write.c -o Check/cholmod_l_write.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_post_tree.c -o Source/amd_l_post_tree.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l_preprocess.c -o Source/camd_l_preprocess.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_colamd.c -o Cholesky/cholmod_l_colamd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_analyze.c -o Cholesky/cholmod_analyze.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_valid.c -o Source/camd_valid.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cholsol.c -o Source/cs_cholsol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_analyze.c -o Cholesky/cholmod_l_analyze.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_etree.c -o Cholesky/cholmod_etree.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_version.c -o Source/camd_version.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_postorder.c -o Source/amd_postorder.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_cholsol.c -o Source/cs_dl_cholsol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_postorder.c -o Source/amd_l_postorder.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/camd_l_valid.c -o Source/camd_l_valid.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_etree.c -o Cholesky/cholmod_l_etree.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_factorize.c -o Cholesky/cholmod_factorize.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_postorder.c -o Cholesky/cholmod_l_postorder.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_cholsol.c -o Source/cs_ci_cholsol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' rm -f CAMD.a ar -cr CAMD.a Source/camd_1.o Source/camd_l1.o Source/camd_2.o Source/camd_l2.o Source/camd_aat.o Source/camd_l_aat.o Source/camd_control.o Source/camd_l_control.o Source/camd_defaults.o Source/camd_l_defaults.o Source/camd_dump.o Source/camd_l_dump.o Source/camd_info.o Source/camd_l_info.o Source/camd_order.o Source/camd_l_order.o Source/camd_postorder.o Source/camd_l_postorder.o Source/camd_preprocess.o Source/camd_l_preprocess.o Source/camd_valid.o Source/camd_l_valid.o Source/camd_version.o ranlib CAMD.a make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_postorder.c -o Cholesky/cholmod_postorder.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_preprocess.c -o Source/amd_preprocess.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_factorize.c -o Cholesky/cholmod_l_factorize.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_rcond.c -o Cholesky/cholmod_rcond.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_cholsol.c -o Source/cs_cl_cholsol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_rcond.c -o Cholesky/cholmod_l_rcond.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_preprocess.c -o Source/amd_l_preprocess.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_compress.c -o Source/cs_compress.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_rowcolcounts.c -o Cholesky/cholmod_rowcolcounts.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CCOLAMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/ccolamd_l.c -o Source/ccolamd_l.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CCOLAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_valid.c -o Source/amd_valid.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_rowcolcounts.c -o Cholesky/cholmod_l_rowcolcounts.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Check/cholmod_l_check.c -o Check/cholmod_l_check.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_l_valid.c -o Source/amd_l_valid.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CCOLAMD' rm -f CCOLAMD.a ar -cr CCOLAMD.a Source/ccolamd.o Source/ccolamd_l.o Source/ccolamd_version.o ranlib CCOLAMD.a make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CCOLAMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_compress.c -o Source/cs_dl_compress.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_resymbol.c -o Cholesky/cholmod_resymbol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/amd_version.c -o Source/amd_version.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_resymbol.c -o Cholesky/cholmod_l_resymbol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_compress.c -o Source/cs_ci_compress.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_compress.c -o Source/cs_cl_compress.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' rm -f AMD.a ar -cr AMD.a Source/amd_1.o Source/amd_l1.o Source/amd_2.o Source/amd_l2.o Source/amd_aat.o Source/amd_l_aat.o Source/amd_control.o Source/amd_l_control.o Source/amd_defaults.o Source/amd_l_defaults.o Source/amd_dump.o Source/amd_l_dump.o Source/amd_info.o Source/amd_l_info.o Source/amd_order.o Source/amd_l_order.o Source/amd_post_tree.o Source/amd_l_post_tree.o Source/amd_postorder.o Source/amd_l_postorder.o Source/amd_preprocess.o Source/amd_l_preprocess.o Source/amd_valid.o Source/amd_l_valid.o Source/amd_version.o ranlib AMD.a make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/AMD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_aat.c -o Utility/cholmod_aat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_convert.c -o Source/cs_convert.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_counts.c -o Source/cs_counts.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_counts.c -o Source/cs_dl_counts.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_spsolve.c -o Cholesky/cholmod_l_spsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_spsolve.c -o Cholesky/cholmod_spsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dense.c -o dense.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_aat.c -o Utility/cholmod_l_aat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_add_size_t.c -o Utility/cholmod_add_size_t.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_counts.c -o Source/cs_ci_counts.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cumsum.c -o Source/cs_cumsum.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_add_size_t.c -o Utility/cholmod_l_add_size_t.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_counts.c -o Source/cs_cl_counts.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_add.c -o Utility/cholmod_add.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_alloc_factor.c -o Utility/cholmod_alloc_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_cumsum.c -o Source/cs_dl_cumsum.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_alloc_factor.c -o Utility/cholmod_l_alloc_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_add.c -o Utility/cholmod_l_add.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_allocate_dense.c -o Utility/cholmod_allocate_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_alloc_work.c -o Utility/cholmod_alloc_work.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_cumsum.c -o Source/cs_ci_cumsum.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_cumsum.c -o Source/cs_cl_cumsum.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dfs.c -o Source/cs_dfs.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_factor.c -o Utility/cholmod_l_allocate_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_dfs.c -o Source/cs_dl_dfs.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_alloc_work.c -o Utility/cholmod_l_alloc_work.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_dense.c -o Utility/cholmod_l_allocate_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_allocate_factor.c -o Utility/cholmod_allocate_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_allocate_sparse.c -o Utility/cholmod_allocate_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_dfs.c -o Source/cs_cl_dfs.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_sparse.c -o Utility/cholmod_l_allocate_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_allocate_triplet.c -o Utility/cholmod_allocate_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_triplet.c -o Utility/cholmod_l_allocate_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_dfs.c -o Source/cs_ci_dfs.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_allocate_work.c -o Utility/cholmod_allocate_work.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_droptol.c -o Source/cs_droptol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_dmperm.c -o Source/cs_dl_dmperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_allocate_work.c -o Utility/cholmod_l_allocate_work.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_dmperm.c -o Source/cs_cl_dmperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_droptol.c -o Source/cs_dl_droptol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_dmperm.c -o Source/cs_ci_dmperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dmperm.c -o Source/cs_dmperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_band_nnz.c -o Utility/cholmod_band_nnz.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_droptol.c -o Source/cs_cl_droptol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_droptol.c -o Source/cs_ci_droptol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dropzeros.c -o Source/cs_dropzeros.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_dropzeros.c -o Source/cs_dl_dropzeros.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_dropzeros.c -o Source/cs_cl_dropzeros.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_calloc.c -o Utility/cholmod_calloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_dropzeros.c -o Source/cs_ci_dropzeros.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dupl.c -o Source/cs_dupl.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_dupl.c -o Source/cs_dl_dupl.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_band.c -o Utility/cholmod_band.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_band_nnz.c -o Utility/cholmod_l_band_nnz.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_entry.c -o Source/cs_entry.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_calloc.c -o Utility/cholmod_l_calloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_dupl.c -o Source/cs_ci_dupl.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_entry.c -o Source/cs_dl_entry.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_band.c -o Utility/cholmod_l_band.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_dupl.c -o Source/cs_cl_dupl.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_clear_flag.c -o Utility/cholmod_clear_flag.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sparse.c -o sparse.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_entry.c -o Source/cs_ci_entry.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ereach.c -o Source/cs_ereach.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_entry.c -o Source/cs_cl_entry.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_clear_flag.c -o Utility/cholmod_l_clear_flag.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_ereach.c -o Source/cs_ci_ereach.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_ereach.c -o Source/cs_dl_ereach.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_etree.c -o Source/cs_etree.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_ereach.c -o Source/cs_cl_ereach.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_dense.c -o Utility/cholmod_l_copy_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_copy_dense.c -o Utility/cholmod_copy_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_etree.c -o Source/cs_cl_etree.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_etree.c -o Source/cs_dl_etree.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_etree.c -o Source/cs_ci_etree.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_rowfac.c -o Cholesky/cholmod_l_rowfac.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_fkeep.c -o Source/cs_fkeep.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_dense2.c -o Utility/cholmod_l_copy_dense2.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_copy_dense2.c -o Utility/cholmod_copy_dense2.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_fkeep.c -o Source/cs_dl_fkeep.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_copy_factor.c -o Utility/cholmod_copy_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_factor.c -o Utility/cholmod_l_copy_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_fkeep.c -o Source/cs_ci_fkeep.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_copy_sparse.c -o Utility/cholmod_copy_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_copy_triplet.c -o Utility/cholmod_copy_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_fkeep.c -o Source/cs_cl_fkeep.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_triplet.c -o Utility/cholmod_l_copy_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_cumsum.c -o Utility/cholmod_cumsum.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_gaxpy.c -o Source/cs_gaxpy.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_copy_sparse.c -o Utility/cholmod_l_copy_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_gaxpy.c -o Source/cs_dl_gaxpy.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_copy.c -o Utility/cholmod_l_copy.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_gaxpy.c -o Source/cs_ci_gaxpy.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_dbound.c -o Utility/cholmod_l_dbound.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_cumsum.c -o Utility/cholmod_l_cumsum.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_dbound.c -o Utility/cholmod_dbound.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_defaults.c -o Utility/cholmod_defaults.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_copy.c -o Utility/cholmod_copy.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_happly.c -o Source/cs_happly.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_happly.c -o Source/cs_dl_happly.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_dense_nnz.c -o Utility/cholmod_dense_nnz.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_gaxpy.c -o Source/cs_cl_gaxpy.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_defaults.c -o Utility/cholmod_l_defaults.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_rowfac.c -o Cholesky/cholmod_rowfac.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_dense_nnz.c -o Utility/cholmod_l_dense_nnz.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_happly.c -o Source/cs_ci_happly.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_divcomplex.c -o Utility/cholmod_divcomplex.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_house.c -o Source/cs_house.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_happly.c -o Source/cs_cl_happly.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_divcomplex.c -o Utility/cholmod_l_divcomplex.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_house.c -o Source/cs_dl_house.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_ensure_dense.c -o Utility/cholmod_ensure_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_error.c -o Utility/cholmod_error.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_house.c -o Source/cs_ci_house.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_dense_to_sparse.c -o Utility/cholmod_l_dense_to_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_ensure_dense.c -o Utility/cholmod_l_ensure_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_dense_to_sparse.c -o Utility/cholmod_dense_to_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_ipvec.c -o Source/cs_dl_ipvec.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ipvec.c -o Source/cs_ipvec.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_house.c -o Source/cs_cl_house.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_error.c -o Utility/cholmod_l_error.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_eye.c -o Utility/cholmod_l_eye.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_eye.c -o Utility/cholmod_eye.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_factor_to_sparse.c -o Utility/cholmod_factor_to_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_ipvec.c -o Source/cs_ci_ipvec.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_ipvec.c -o Source/cs_cl_ipvec.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_factor_to_sparse.c -o Utility/cholmod_l_factor_to_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_leaf.c -o Source/cs_leaf.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_finish.c -o Utility/cholmod_l_finish.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_finish.c -o Utility/cholmod_finish.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_free.c -o Utility/cholmod_l_free.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_leaf.c -o Source/cs_ci_leaf.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_free.c -o Utility/cholmod_free.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_leaf.c -o Source/cs_dl_leaf.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_leaf.c -o Source/cs_cl_leaf.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_load.c -o Source/cs_load.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_free_dense.c -o Utility/cholmod_free_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_free_dense.c -o Utility/cholmod_l_free_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_free_factor.c -o Utility/cholmod_free_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_free_factor.c -o Utility/cholmod_l_free_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_free_sparse.c -o Utility/cholmod_free_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_load.c -o Source/cs_ci_load.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_free_sparse.c -o Utility/cholmod_l_free_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_load.c -o Source/cs_cl_load.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_free_work.c -o Utility/cholmod_free_work.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_load.c -o Source/cs_dl_load.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_lsolve.c -o Source/cs_lsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_lsolve.c -o Source/cs_dl_lsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_free_triplet.c -o Utility/cholmod_free_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_free_triplet.c -o Utility/cholmod_l_free_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_hypot.c -o Utility/cholmod_hypot.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ltsolve.c -o Source/cs_ltsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_hypot.c -o Utility/cholmod_l_hypot.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_lsolve.c -o Source/cs_cl_lsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_free_work.c -o Utility/cholmod_l_free_work.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_lsolve.c -o Source/cs_ci_lsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_ltsolve.c -o Source/cs_dl_ltsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_malloc.c -o Utility/cholmod_malloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_malloc.c -o Utility/cholmod_l_malloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_maxrank.c -o Utility/cholmod_maxrank.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_ltsolve.c -o Source/cs_ci_ltsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_maxrank.c -o Utility/cholmod_l_maxrank.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_memdebug.c -o Utility/cholmod_memdebug.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_ltsolve.c -o Source/cs_cl_ltsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_change_factor.c -o Utility/cholmod_l_change_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_mult_size_t.c -o Utility/cholmod_mult_size_t.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_mult_size_t.c -o Utility/cholmod_l_mult_size_t.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_lu.c -o Source/cs_dl_lu.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_lu.c -o Source/cs_ci_lu.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_nnz.c -o Utility/cholmod_nnz.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_lusol.c -o Source/cs_lusol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_mult_uint64_t.c -o Utility/cholmod_mult_uint64_t.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_lu.c -o Source/cs_lu.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_nnz.c -o Utility/cholmod_l_nnz.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_lu.c -o Source/cs_cl_lu.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_lusol.c -o Source/cs_dl_lusol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_lusol.c -o Source/cs_ci_lusol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_ones.c -o Utility/cholmod_ones.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_pack_factor.c -o Utility/cholmod_pack_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_lusol.c -o Source/cs_cl_lusol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_malloc.c -o Source/cs_dl_malloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_malloc.c -o Source/cs_malloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_ptranspose.c -o Utility/cholmod_l_ptranspose.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_malloc.c -o Source/cs_ci_malloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_malloc.c -o Source/cs_cl_malloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_ones.c -o Utility/cholmod_l_ones.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_pack_factor.c -o Utility/cholmod_l_pack_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_ptranspose.c -o Utility/cholmod_ptranspose.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c subscript.c -o subscript.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_realloc.c -o Utility/cholmod_realloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_realloc.c -o Utility/cholmod_l_realloc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_realloc_multiple.c -o Utility/cholmod_realloc_multiple.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_maxtrans.c -o Source/cs_maxtrans.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_change_factor.c -o Utility/cholmod_change_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_realloc_multiple.c -o Utility/cholmod_l_realloc_multiple.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_multiply.c -o Source/cs_dl_multiply.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_maxtrans.c -o Source/cs_cl_maxtrans.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_factor.c -o Utility/cholmod_l_reallocate_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_factor.c -o Utility/cholmod_reallocate_factor.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_maxtrans.c -o Source/cs_ci_maxtrans.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_multiply.c -o Source/cs_multiply.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_maxtrans.c -o Source/cs_dl_maxtrans.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_multiply.c -o Source/cs_ci_multiply.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_sparse.c -o Utility/cholmod_reallocate_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_sparse.c -o Utility/cholmod_l_reallocate_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_column.c -o Utility/cholmod_reallocate_column.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_multiply.c -o Source/cs_cl_multiply.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_norm.c -o Source/cs_dl_norm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_column.c -o Utility/cholmod_l_reallocate_column.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_norm.c -o Source/cs_norm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_sbound.c -o Utility/cholmod_sbound.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_sbound.c -o Utility/cholmod_l_sbound.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_reallocate_triplet.c -o Utility/cholmod_reallocate_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_score_comp.c -o Utility/cholmod_score_comp.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_norm.c -o Source/cs_ci_norm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_norm.c -o Source/cs_cl_norm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_permute.c -o Source/cs_ci_permute.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_reallocate_triplet.c -o Utility/cholmod_l_reallocate_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_set_empty.c -o Utility/cholmod_l_set_empty.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_set_empty.c -o Utility/cholmod_set_empty.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_permute.c -o Source/cs_dl_permute.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_score_comp.c -o Utility/cholmod_l_score_comp.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_permute.c -o Source/cs_permute.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_pinv.c -o Source/cs_cl_pinv.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_pinv.c -o Source/cs_ci_pinv.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_pinv.c -o Source/cs_pinv.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_pinv.c -o Source/cs_dl_pinv.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_permute.c -o Source/cs_cl_permute.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_post.c -o Source/cs_dl_post.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_post.c -o Source/cs_post.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_post.c -o Source/cs_ci_post.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_print.c -o Source/cs_ci_print.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_print.c -o Source/cs_dl_print.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_post.c -o Source/cs_cl_post.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_print.c -o Source/cs_print.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_print.c -o Source/cs_cl_print.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_sparse_to_dense.c -o Utility/cholmod_l_sparse_to_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_pvec.c -o Source/cs_dl_pvec.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_l_solve.c -o Cholesky/cholmod_l_solve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_pvec.c -o Source/cs_cl_pvec.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_pvec.c -o Source/cs_ci_pvec.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_sparse_to_dense.c -o Utility/cholmod_sparse_to_dense.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_pvec.c -o Source/cs_pvec.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_qr.c -o Source/cs_qr.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_speye.c -o Utility/cholmod_speye.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_spzeros.c -o Utility/cholmod_spzeros.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_qr.c -o Source/cs_dl_qr.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_speye.c -o Utility/cholmod_l_speye.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_start.c -o Utility/cholmod_start.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_spzeros.c -o Utility/cholmod_l_spzeros.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_qr.c -o Source/cs_ci_qr.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_start.c -o Utility/cholmod_l_start.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_transpose.c -o Utility/cholmod_transpose.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_qrsol.c -o Source/cs_dl_qrsol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_qrsol.c -o Source/cs_qrsol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_qr.c -o Source/cs_cl_qr.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_qrsol.c -o Source/cs_cl_qrsol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_sort.c -o Utility/cholmod_sort.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_transpose.c -o Utility/cholmod_l_transpose.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_sort.c -o Utility/cholmod_l_sort.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_qrsol.c -o Source/cs_ci_qrsol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_randperm.c -o Source/cs_ci_randperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_randperm.c -o Source/cs_randperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_sparse_to_triplet.c -o Utility/cholmod_l_sparse_to_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_randperm.c -o Source/cs_dl_randperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_randperm.c -o Source/cs_cl_randperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_reach.c -o Source/cs_reach.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_reach.c -o Source/cs_dl_reach.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_reach.c -o Source/cs_ci_reach.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_version.c -o Utility/cholmod_version.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_reach.c -o Source/cs_cl_reach.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_scatter.c -o Source/cs_dl_scatter.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_sparse_to_triplet.c -o Utility/cholmod_sparse_to_triplet.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_scatter.c -o Source/cs_scatter.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_scatter.c -o Source/cs_cl_scatter.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_scatter.c -o Source/cs_ci_scatter.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_version.c -o Utility/cholmod_l_version.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_schol.c -o Source/cs_schol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_scc.c -o Source/cs_dl_scc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_triplet_to_sparse.c -o Utility/cholmod_triplet_to_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_scc.c -o Source/cs_ci_scc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_triplet_to_sparse.c -o Utility/cholmod_l_triplet_to_sparse.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_scc.c -o Source/cs_scc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_schol.c -o Source/cs_ci_schol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_scc.c -o Source/cs_cl_scc.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_zeros.c -o Utility/cholmod_zeros.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_schol.c -o Source/cs_dl_schol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_schol.c -o Source/cs_cl_schol.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_transpose_unsym.c -o Utility/cholmod_transpose_unsym.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_zeros.c -o Utility/cholmod_l_zeros.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_spsolve.c -o Source/cs_spsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_spsolve.c -o Source/cs_dl_spsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_spsolve.c -o Source/cs_ci_spsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_xtype.c -o Utility/cholmod_xtype.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_xtype.c -o Utility/cholmod_l_xtype.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_spsolve.c -o Source/cs_cl_spsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_sqr.c -o Source/cs_dl_sqr.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_sqr.c -o Source/cs_sqr.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_transpose_unsym.c -o Utility/cholmod_l_transpose_unsym.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Cholesky/cholmod_solve.c -o Cholesky/cholmod_solve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_symperm.c -o Source/cs_symperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_symperm.c -o Source/cs_dl_symperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_sqr.c -o Source/cs_ci_sqr.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_sqr.c -o Source/cs_cl_sqr.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_l_transpose_sym.c -o Utility/cholmod_l_transpose_sym.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_horzcat.c -o MatrixOps/cholmod_horzcat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_symperm.c -o Source/cs_cl_symperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_horzcat.c -o MatrixOps/cholmod_l_horzcat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_tdfs.c -o Source/cs_tdfs.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_symperm.c -o Source/cs_ci_symperm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_drop.c -o MatrixOps/cholmod_l_drop.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_scale.c -o MatrixOps/cholmod_scale.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_scale.c -o MatrixOps/cholmod_l_scale.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_tdfs.c -o Source/cs_dl_tdfs.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Utility/cholmod_transpose_sym.c -o Utility/cholmod_transpose_sym.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_tdfs.c -o Source/cs_ci_tdfs.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_symmetry.c -o MatrixOps/cholmod_symmetry.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_tdfs.c -o Source/cs_cl_tdfs.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_ssmult.c -o MatrixOps/cholmod_l_ssmult.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_drop.c -o MatrixOps/cholmod_drop.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_transpose.c -o Source/cs_transpose.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_ssmult.c -o MatrixOps/cholmod_ssmult.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_symmetry.c -o MatrixOps/cholmod_l_symmetry.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_transpose.c -o Source/cs_dl_transpose.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_vertcat.c -o MatrixOps/cholmod_vertcat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_transpose.c -o Source/cs_ci_transpose.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_submatrix.c -o MatrixOps/cholmod_submatrix.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_transpose.c -o Source/cs_cl_transpose.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_updown.c -o Source/cs_updown.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_usolve.c -o Source/cs_usolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_updown.c -o Source/cs_dl_updown.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_vertcat.c -o MatrixOps/cholmod_l_vertcat.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_usolve.c -o Source/cs_dl_usolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_updown.c -o Source/cs_cl_updown.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Modify/cholmod_l_rowdel.c -o Modify/cholmod_l_rowdel.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_submatrix.c -o MatrixOps/cholmod_l_submatrix.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_updown.c -o Source/cs_ci_updown.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_usolve.c -o Source/cs_ci_usolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_usolve.c -o Source/cs_cl_usolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Modify/cholmod_rowadd.c -o Modify/cholmod_rowadd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_util.c -o Source/cs_ci_util.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Modify/cholmod_rowdel.c -o Modify/cholmod_rowdel.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_util.c -o Source/cs_util.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_camd.c -o Partition/cholmod_camd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_util.c -o Source/cs_dl_util.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_norm.c -o MatrixOps/cholmod_norm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_utsolve.c -o Source/cs_utsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_l_camd.c -o Partition/cholmod_l_camd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_norm.c -o MatrixOps/cholmod_l_norm.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_dl_utsolve.c -o Source/cs_dl_utsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_ccolamd.c -o Partition/cholmod_ccolamd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Modify/cholmod_l_rowadd.c -o Modify/cholmod_l_rowadd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_utsolve.c -o Source/cs_cl_utsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_cl_util.c -o Source/cs_cl_util.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cs_ci_utsolve.c -o Source/cs_ci_utsolve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_l_ccolamd.c -o Partition/cholmod_l_ccolamd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_csymamd.c -o Partition/cholmod_csymamd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' gcc -I./Include -I../SuiteSparse_config -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Source/cxsparse_version.c -o Source/cxsparse_version.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_l_csymamd.c -o Partition/cholmod_l_csymamd.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_l_metis.c -o Partition/cholmod_l_metis.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_metis.c -o Partition/cholmod_metis.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' rm -f CXSparse.a ar -cr CXSparse.a Source/cs_add.o Source/cs_dl_add.o Source/cs_ci_add.o Source/cs_cl_add.o Source/cs_amd.o Source/cs_dl_amd.o Source/cs_ci_amd.o Source/cs_cl_amd.o Source/cs_chol.o Source/cs_dl_chol.o Source/cs_ci_chol.o Source/cs_cl_chol.o Source/cs_cholsol.o Source/cs_dl_cholsol.o Source/cs_ci_cholsol.o Source/cs_cl_cholsol.o Source/cs_compress.o Source/cs_dl_compress.o Source/cs_ci_compress.o Source/cs_cl_compress.o Source/cs_convert.o Source/cs_counts.o Source/cs_dl_counts.o Source/cs_ci_counts.o Source/cs_cl_counts.o Source/cs_cumsum.o Source/cs_dl_cumsum.o Source/cs_ci_cumsum.o Source/cs_cl_cumsum.o Source/cs_dfs.o Source/cs_dl_dfs.o Source/cs_ci_dfs.o Source/cs_cl_dfs.o Source/cs_dmperm.o Source/cs_dl_dmperm.o Source/cs_ci_dmperm.o Source/cs_cl_dmperm.o Source/cs_droptol.o Source/cs_dl_droptol.o Source/cs_ci_droptol.o Source/cs_cl_droptol.o Source/cs_dropzeros.o Source/cs_dl_dropzeros.o Source/cs_ci_dropzeros.o Source/cs_cl_dropzeros.o Source/cs_dupl.o Source/cs_dl_dupl.o Source/cs_ci_dupl.o Source/cs_cl_dupl.o Source/cs_entry.o Source/cs_dl_entry.o Source/cs_ci_entry.o Source/cs_cl_entry.o Source/cs_ereach.o Source/cs_dl_ereach.o Source/cs_ci_ereach.o Source/cs_cl_ereach.o Source/cs_etree.o Source/cs_dl_etree.o Source/cs_ci_etree.o Source/cs_cl_etree.o Source/cs_fkeep.o Source/cs_dl_fkeep.o Source/cs_ci_fkeep.o Source/cs_cl_fkeep.o Source/cs_gaxpy.o Source/cs_dl_gaxpy.o Source/cs_ci_gaxpy.o Source/cs_cl_gaxpy.o Source/cs_happly.o Source/cs_dl_happly.o Source/cs_ci_happly.o Source/cs_cl_happly.o Source/cs_house.o Source/cs_dl_house.o Source/cs_ci_house.o Source/cs_cl_house.o Source/cs_ipvec.o Source/cs_dl_ipvec.o Source/cs_ci_ipvec.o Source/cs_cl_ipvec.o Source/cs_leaf.o Source/cs_dl_leaf.o Source/cs_ci_leaf.o Source/cs_cl_leaf.o Source/cs_load.o Source/cs_dl_load.o Source/cs_ci_load.o Source/cs_cl_load.o Source/cs_lsolve.o Source/cs_dl_lsolve.o Source/cs_ci_lsolve.o Source/cs_cl_lsolve.o Source/cs_ltsolve.o Source/cs_dl_ltsolve.o Source/cs_ci_ltsolve.o Source/cs_cl_ltsolve.o Source/cs_lu.o Source/cs_dl_lu.o Source/cs_ci_lu.o Source/cs_cl_lu.o Source/cs_lusol.o Source/cs_dl_lusol.o Source/cs_ci_lusol.o Source/cs_cl_lusol.o Source/cs_malloc.o Source/cs_dl_malloc.o Source/cs_ci_malloc.o Source/cs_cl_malloc.o Source/cs_maxtrans.o Source/cs_dl_maxtrans.o Source/cs_ci_maxtrans.o Source/cs_cl_maxtrans.o Source/cs_multiply.o Source/cs_dl_multiply.o Source/cs_ci_multiply.o Source/cs_cl_multiply.o Source/cs_norm.o Source/cs_dl_norm.o Source/cs_ci_norm.o Source/cs_cl_norm.o Source/cs_permute.o Source/cs_dl_permute.o Source/cs_ci_permute.o Source/cs_cl_permute.o Source/cs_pinv.o Source/cs_dl_pinv.o Source/cs_ci_pinv.o Source/cs_cl_pinv.o Source/cs_post.o Source/cs_dl_post.o Source/cs_ci_post.o Source/cs_cl_post.o Source/cs_print.o Source/cs_dl_print.o Source/cs_ci_print.o Source/cs_cl_print.o Source/cs_pvec.o Source/cs_dl_pvec.o Source/cs_ci_pvec.o Source/cs_cl_pvec.o Source/cs_qr.o Source/cs_dl_qr.o Source/cs_ci_qr.o Source/cs_cl_qr.o Source/cs_qrsol.o Source/cs_dl_qrsol.o Source/cs_ci_qrsol.o Source/cs_cl_qrsol.o Source/cs_randperm.o Source/cs_dl_randperm.o Source/cs_ci_randperm.o Source/cs_cl_randperm.o Source/cs_reach.o Source/cs_dl_reach.o Source/cs_ci_reach.o Source/cs_cl_reach.o Source/cs_scatter.o Source/cs_dl_scatter.o Source/cs_ci_scatter.o Source/cs_cl_scatter.o Source/cs_scc.o Source/cs_dl_scc.o Source/cs_ci_scc.o Source/cs_cl_scc.o Source/cs_schol.o Source/cs_dl_schol.o Source/cs_ci_schol.o Source/cs_cl_schol.o Source/cs_spsolve.o Source/cs_dl_spsolve.o Source/cs_ci_spsolve.o Source/cs_cl_spsolve.o Source/cs_sqr.o Source/cs_dl_sqr.o Source/cs_ci_sqr.o Source/cs_cl_sqr.o Source/cs_symperm.o Source/cs_dl_symperm.o Source/cs_ci_symperm.o Source/cs_cl_symperm.o Source/cs_tdfs.o Source/cs_dl_tdfs.o Source/cs_ci_tdfs.o Source/cs_cl_tdfs.o Source/cs_transpose.o Source/cs_dl_transpose.o Source/cs_ci_transpose.o Source/cs_cl_transpose.o Source/cs_updown.o Source/cs_dl_updown.o Source/cs_ci_updown.o Source/cs_cl_updown.o Source/cs_usolve.o Source/cs_dl_usolve.o Source/cs_ci_usolve.o Source/cs_cl_usolve.o Source/cs_util.o Source/cs_dl_util.o Source/cs_ci_util.o Source/cs_cl_util.o Source/cs_utsolve.o Source/cs_dl_utsolve.o Source/cs_ci_utsolve.o Source/cs_cl_utsolve.o Source/cxsparse_version.o ranlib CXSparse.a make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CXSparse' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Supernodal/cholmod_l_super_solve.c -o Supernodal/cholmod_l_super_solve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Supernodal/cholmod_super_solve.c -o Supernodal/cholmod_super_solve.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Supernodal/cholmod_super_symbolic.c -o Supernodal/cholmod_super_symbolic.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Supernodal/cholmod_l_super_symbolic.c -o Supernodal/cholmod_l_super_symbolic.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_l_nesdis.c -o Partition/cholmod_l_nesdis.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Supernodal/cholmod_l_super_numeric.c -o Supernodal/cholmod_l_super_numeric.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_nesdis.c -o Partition/cholmod_nesdis.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Supernodal/cholmod_super_numeric.c -o Supernodal/cholmod_super_numeric.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_l_sdmult.c -o MatrixOps/cholmod_l_sdmult.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c MatrixOps/cholmod_sdmult.c -o MatrixOps/cholmod_sdmult.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Modify/cholmod_updown.c -o Modify/cholmod_updown.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Modify/cholmod_l_updown.c -o Modify/cholmod_l_updown.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I"SuiteSparse/SuiteSparse_config" -I/usr/local/include -fvisibility=hidden -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coerce.c -o coerce.o make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' gcc -I./Include -I../SuiteSparse_config -I../AMD/Include -I../COLAMD/Include -I../CAMD/Include -I../CCOLAMD/Include -I. -I./SuiteSparse_metis/include -I./SuiteSparse_metis/GKlib -I./SuiteSparse_metis/libmetis -I/usr/local/include -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -DNPRINT -DNTIMER -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -fpic -fvisibility=hidden -c Partition/cholmod_metis_wrapper.c -o Partition/cholmod_metis_wrapper.o make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[4]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' rm -f CHOLMOD.a ar -cr CHOLMOD.a Check/cholmod_check.o Check/cholmod_l_check.o Check/cholmod_read.o Check/cholmod_l_read.o Check/cholmod_write.o Check/cholmod_l_write.o Cholesky/cholmod_amd.o Cholesky/cholmod_l_amd.o Cholesky/cholmod_analyze.o Cholesky/cholmod_l_analyze.o Cholesky/cholmod_colamd.o Cholesky/cholmod_l_colamd.o Cholesky/cholmod_etree.o Cholesky/cholmod_l_etree.o Cholesky/cholmod_factorize.o Cholesky/cholmod_l_factorize.o Cholesky/cholmod_postorder.o Cholesky/cholmod_l_postorder.o Cholesky/cholmod_rcond.o Cholesky/cholmod_l_rcond.o Cholesky/cholmod_resymbol.o Cholesky/cholmod_l_resymbol.o Cholesky/cholmod_rowcolcounts.o Cholesky/cholmod_l_rowcolcounts.o Cholesky/cholmod_rowfac.o Cholesky/cholmod_l_rowfac.o Cholesky/cholmod_solve.o Cholesky/cholmod_l_solve.o Cholesky/cholmod_spsolve.o Cholesky/cholmod_l_spsolve.o Utility/cholmod_aat.o Utility/cholmod_l_aat.o Utility/cholmod_add.o Utility/cholmod_l_add.o Utility/cholmod_add_size_t.o Utility/cholmod_l_add_size_t.o Utility/cholmod_alloc_factor.o Utility/cholmod_l_alloc_factor.o Utility/cholmod_alloc_work.o Utility/cholmod_l_alloc_work.o Utility/cholmod_allocate_dense.o Utility/cholmod_l_allocate_dense.o Utility/cholmod_allocate_factor.o Utility/cholmod_l_allocate_factor.o Utility/cholmod_allocate_sparse.o Utility/cholmod_l_allocate_sparse.o Utility/cholmod_allocate_triplet.o Utility/cholmod_l_allocate_triplet.o Utility/cholmod_allocate_work.o Utility/cholmod_l_allocate_work.o Utility/cholmod_band.o Utility/cholmod_l_band.o Utility/cholmod_band_nnz.o Utility/cholmod_l_band_nnz.o Utility/cholmod_calloc.o Utility/cholmod_l_calloc.o Utility/cholmod_change_factor.o Utility/cholmod_l_change_factor.o Utility/cholmod_clear_flag.o Utility/cholmod_l_clear_flag.o Utility/cholmod_copy.o Utility/cholmod_l_copy.o Utility/cholmod_copy_dense.o Utility/cholmod_l_copy_dense.o Utility/cholmod_copy_dense2.o Utility/cholmod_l_copy_dense2.o Utility/cholmod_copy_factor.o Utility/cholmod_l_copy_factor.o Utility/cholmod_copy_sparse.o Utility/cholmod_l_copy_sparse.o Utility/cholmod_copy_triplet.o Utility/cholmod_l_copy_triplet.o Utility/cholmod_cumsum.o Utility/cholmod_l_cumsum.o Utility/cholmod_dbound.o Utility/cholmod_l_dbound.o Utility/cholmod_defaults.o Utility/cholmod_l_defaults.o Utility/cholmod_dense_nnz.o Utility/cholmod_l_dense_nnz.o Utility/cholmod_dense_to_sparse.o Utility/cholmod_l_dense_to_sparse.o Utility/cholmod_divcomplex.o Utility/cholmod_l_divcomplex.o Utility/cholmod_ensure_dense.o Utility/cholmod_l_ensure_dense.o Utility/cholmod_error.o Utility/cholmod_l_error.o Utility/cholmod_eye.o Utility/cholmod_l_eye.o Utility/cholmod_factor_to_sparse.o Utility/cholmod_l_factor_to_sparse.o Utility/cholmod_finish.o Utility/cholmod_l_finish.o Utility/cholmod_free.o Utility/cholmod_l_free.o Utility/cholmod_free_dense.o Utility/cholmod_l_free_dense.o Utility/cholmod_free_factor.o Utility/cholmod_l_free_factor.o Utility/cholmod_free_sparse.o Utility/cholmod_l_free_sparse.o Utility/cholmod_free_triplet.o Utility/cholmod_l_free_triplet.o Utility/cholmod_free_work.o Utility/cholmod_l_free_work.o Utility/cholmod_hypot.o Utility/cholmod_l_hypot.o Utility/cholmod_malloc.o Utility/cholmod_l_malloc.o Utility/cholmod_maxrank.o Utility/cholmod_l_maxrank.o Utility/cholmod_memdebug.o Utility/cholmod_mult_size_t.o Utility/cholmod_l_mult_size_t.o Utility/cholmod_mult_uint64_t.o Utility/cholmod_nnz.o Utility/cholmod_l_nnz.o Utility/cholmod_ones.o Utility/cholmod_l_ones.o Utility/cholmod_pack_factor.o Utility/cholmod_l_pack_factor.o Utility/cholmod_ptranspose.o Utility/cholmod_l_ptranspose.o Utility/cholmod_realloc.o Utility/cholmod_l_realloc.o Utility/cholmod_realloc_multiple.o Utility/cholmod_l_realloc_multiple.o Utility/cholmod_reallocate_column.o Utility/cholmod_l_reallocate_column.o Utility/cholmod_reallocate_factor.o Utility/cholmod_l_reallocate_factor.o Utility/cholmod_reallocate_sparse.o Utility/cholmod_l_reallocate_sparse.o Utility/cholmod_reallocate_triplet.o Utility/cholmod_l_reallocate_triplet.o Utility/cholmod_sbound.o Utility/cholmod_l_sbound.o Utility/cholmod_score_comp.o Utility/cholmod_l_score_comp.o Utility/cholmod_set_empty.o Utility/cholmod_l_set_empty.o Utility/cholmod_sort.o Utility/cholmod_l_sort.o Utility/cholmod_sparse_to_dense.o Utility/cholmod_l_sparse_to_dense.o Utility/cholmod_sparse_to_triplet.o Utility/cholmod_l_sparse_to_triplet.o Utility/cholmod_speye.o Utility/cholmod_l_speye.o Utility/cholmod_spzeros.o Utility/cholmod_l_spzeros.o Utility/cholmod_start.o Utility/cholmod_l_start.o Utility/cholmod_transpose.o Utility/cholmod_l_transpose.o Utility/cholmod_transpose_sym.o Utility/cholmod_l_transpose_sym.o Utility/cholmod_transpose_unsym.o Utility/cholmod_l_transpose_unsym.o Utility/cholmod_triplet_to_sparse.o Utility/cholmod_l_triplet_to_sparse.o Utility/cholmod_version.o Utility/cholmod_l_version.o Utility/cholmod_xtype.o Utility/cholmod_l_xtype.o Utility/cholmod_zeros.o Utility/cholmod_l_zeros.o MatrixOps/cholmod_drop.o MatrixOps/cholmod_l_drop.o MatrixOps/cholmod_horzcat.o MatrixOps/cholmod_l_horzcat.o MatrixOps/cholmod_norm.o MatrixOps/cholmod_l_norm.o MatrixOps/cholmod_scale.o MatrixOps/cholmod_l_scale.o MatrixOps/cholmod_sdmult.o MatrixOps/cholmod_l_sdmult.o MatrixOps/cholmod_ssmult.o MatrixOps/cholmod_l_ssmult.o MatrixOps/cholmod_submatrix.o MatrixOps/cholmod_l_submatrix.o MatrixOps/cholmod_symmetry.o MatrixOps/cholmod_l_symmetry.o MatrixOps/cholmod_vertcat.o MatrixOps/cholmod_l_vertcat.o Modify/cholmod_rowadd.o Modify/cholmod_l_rowadd.o Modify/cholmod_rowdel.o Modify/cholmod_l_rowdel.o Modify/cholmod_updown.o Modify/cholmod_l_updown.o Partition/cholmod_camd.o Partition/cholmod_l_camd.o Partition/cholmod_ccolamd.o Partition/cholmod_l_ccolamd.o Partition/cholmod_csymamd.o Partition/cholmod_l_csymamd.o Partition/cholmod_metis.o Partition/cholmod_l_metis.o Partition/cholmod_metis_wrapper.o Partition/cholmod_nesdis.o Partition/cholmod_l_nesdis.o Supernodal/cholmod_super_numeric.o Supernodal/cholmod_l_super_numeric.o Supernodal/cholmod_super_solve.o Supernodal/cholmod_l_super_solve.o Supernodal/cholmod_super_symbolic.o Supernodal/cholmod_l_super_symbolic.o ranlib CHOLMOD.a make[4]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src/SuiteSparse/CHOLMOD' make[3]: Entering directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o Matrix.so Csparse.o attrib.o bind.o cholmod-common.o cholmod-etc.o coerce.o cs-etc.o dense.o determinant.o expm.o factor.o idz.o init.o kappa.o matmult.o objects.o perm.o solve.o sparse.o subassign.o subscript.o utils-R.o utils.o validity.o vector.o SuiteSparse/CHOLMOD/CHOLMOD.a SuiteSparse/CCOLAMD/CCOLAMD.a SuiteSparse/CAMD/CAMD.a SuiteSparse/COLAMD/COLAMD.a SuiteSparse/AMD/AMD.a SuiteSparse/CXSparse/CXSparse.a SuiteSparse/SuiteSparse_config/SuiteSparse_config.a -lopenblas -lgfortran -lm -lquadmath -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpImiCw8/R.INSTALL1a67146b1e32fb/Matrix/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csc","RsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.coo","RsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","sparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","sparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","sparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"Matrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"Matrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"Matrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"graphAM","TsparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","RsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","TsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","sparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"Matrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"Matrix","graph"': no definition for class "graph" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.X' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from 'stats' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package mgcv make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package survival make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agmart.c -o agmart.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agmart3.c -o agmart3.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agscore2.c -o agscore2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agsurv4.c -o agsurv4.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agsurv5.c -o agsurv5.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agexact.c -o agexact.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cdecomp.c -o cdecomp.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chinv2.c -o chinv2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cholesky2.c -o cholesky2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chinv3.c -o chinv3.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c collapse.c -o collapse.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agscore3.c -o agscore3.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chsolve2.c -o chsolve2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chsolve3.c -o chsolve3.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agfit4.c -o agfit4.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chsolve5.c -o chsolve5.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c concordance1.c -o concordance1.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cholesky5.c -o cholesky5.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cholesky3.c -o cholesky3.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cox_Rcallback.c -o cox_Rcallback.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxdetail.c -o coxdetail.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxmart2.c -o coxmart2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c concordance5.c -o concordance5.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxmart.c -o coxmart.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c agfit5.c -o agfit5.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxph_wtest.c -o coxph_wtest.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxsafe.c -o coxsafe.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxcount1.c -o coxcount1.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c concordance3.c -o concordance3.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxscho.c -o coxscho.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxfit6.c -o coxfit6.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dmatrix.c -o dmatrix.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxfit5.c -o coxfit5.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxscore2.c -o coxscore2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxsurv2.c -o coxsurv2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c doloop.c -o doloop.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxsurv3.c -o coxsurv3.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gchol.c -o gchol.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c multicheck.c -o multicheck.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxsurv1.c -o coxsurv1.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c finegray.c -o finegray.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxsurv4.c -o coxsurv4.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fastkm.c -o fastkm.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c norisk.c -o norisk.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survfit4.c -o survfit4.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pyears2.c -o pyears2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pyears3b.c -o pyears3b.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c residcsum.c -o residcsum.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pystep.c -o pystep.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survdiff2.c -o survdiff2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pyears1.c -o pyears1.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survConcordance.c -o survConcordance.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxexact.c -o coxexact.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survsplit.c -o survsplit.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c twoclust.c -o twoclust.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c tmerge.c -o tmerge.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survfitresid.c -o survfitresid.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survpenal.c -o survpenal.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survreg6.c -o survreg6.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survregc2.c -o survregc2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survfitaj.c -o survfitaj.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survregc1.c -o survregc1.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survreg7.c -o survreg7.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c zph1.c -o zph1.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c zph2.c -o zph2.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c survfitkm.c -o survfitkm.o make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' make[3]: Entering directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agscore3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o residcsum.o survConcordance.o survdiff2.o survfit4.o survfitaj.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o twoclust.o zph1.o zph2.o -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpXIO3qw/R.INSTALL1bf7a55aa66330/survival/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' begin installing recommended package boot make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (boot) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs using C compiler: 'gcc (Mageia 14.2.0-2.mga10) 14.2.0' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c davies.c -o davies.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mvn.c -o mvn.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c coxph.c -o coxph.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mgcv.c -o mgcv.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c soap.c -o soap.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c magic.c -o magic.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qp.c -o qp.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c misc.c -o misc.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c matrix.c -o matrix.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c tprs.c -o tprs.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sparse-smooth.c -o sparse-smooth.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sparse.c -o sparse.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ncv.c -o ncv.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c discrete.c -o discrete.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gdi.c -o gdi.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -I"/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mat.c -o mat.o make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' make[3]: Entering directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' gcc -shared -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o ncv.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -lopenblas -lgfortran -lm -lquadmath -fopenmp -L/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/lib -lR make[3]: Leaving directory '/tmp/RtmpyNA7ci/R.INSTALL1bf7d21550e8fe/mgcv/src' installing to /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mgcv) make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library/Recommended' + pushd src/nmath/standalone ~/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone ~/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2 + /usr/bin/make -O -j16 V=1 VERBOSE=1 (cd ../../include; /usr/bin/make Rmath.h) make[1]: 'Rmath.h' is up to date. Copying source files make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making mlutils.d from mlutils.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making d1mach.d from d1mach.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making i1mach.d from i1mach.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making fmax2.d from fmax2.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making fmin2.d from fmin2.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making fprec.d from fprec.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making fround.d from fround.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making ftrunc.d from ftrunc.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making sign.d from sign.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making fsign.d from fsign.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making imax2.d from imax2.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making chebyshev.d from chebyshev.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making imin2.d from imin2.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making log1p.d from log1p.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making lgammacor.d from lgammacor.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making gammalims.d from gammalims.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making bd0.d from bd0.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making stirlerr.d from stirlerr.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making gamma.d from gamma.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making beta.d from beta.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making gamma_cody.d from gamma_cody.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making lgamma.d from lgamma.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making lbeta.d from lbeta.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making polygamma.d from polygamma.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making cospi.d from cospi.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making bessel_j.d from bessel_j.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making bessel_i.d from bessel_i.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making bessel_k.d from bessel_k.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making bessel_y.d from bessel_y.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making choose.d from choose.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making snorm.d from snorm.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dgamma.d from dgamma.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making sexp.d from sexp.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qgamma.d from qgamma.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pgamma.d from pgamma.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rgamma.d from rgamma.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dbeta.d from dbeta.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qbeta.d from qbeta.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pbeta.d from pbeta.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rbeta.d from rbeta.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dunif.d from dunif.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making punif.d from punif.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qunif.d from qunif.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making runif.d from runif.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dnorm.d from dnorm.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pnorm.d from pnorm.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rnorm.d from rnorm.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making plnorm.d from plnorm.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qnorm.d from qnorm.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dlnorm.d from dlnorm.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qlnorm.d from qlnorm.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rlnorm.d from rlnorm.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making df.d from df.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pf.d from pf.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qf.d from qf.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rf.d from rf.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dnf.d from dnf.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dt.d from dt.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pt.d from pt.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qt.d from qt.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rt.d from rt.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dnt.d from dnt.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dchisq.d from dchisq.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pchisq.d from pchisq.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qchisq.d from qchisq.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rchisq.d from rchisq.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rnchisq.d from rnchisq.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dbinom.d from dbinom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pbinom.d from pbinom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qbinom.d from qbinom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rbinom.d from rbinom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rmultinom.d from rmultinom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dcauchy.d from dcauchy.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pcauchy.d from pcauchy.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qcauchy.d from qcauchy.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rcauchy.d from rcauchy.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pexp.d from pexp.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dexp.d from dexp.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qexp.d from qexp.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rexp.d from rexp.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dgeom.d from dgeom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pgeom.d from pgeom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qgeom.d from qgeom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rgeom.d from rgeom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dhyper.d from dhyper.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making phyper.d from phyper.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qhyper.d from qhyper.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dnbinom.d from dnbinom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rhyper.d from rhyper.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pnbinom.d from pnbinom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qnbinom.d from qnbinom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qnbinom_mu.d from qnbinom_mu.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rnbinom.d from rnbinom.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dpois.d from dpois.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making ppois.d from ppois.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qpois.d from qpois.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rpois.d from rpois.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dweibull.d from dweibull.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qweibull.d from qweibull.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pweibull.d from pweibull.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rweibull.d from rweibull.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dlogis.d from dlogis.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making plogis.d from plogis.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qlogis.d from qlogis.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making rlogis.d from rlogis.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dnchisq.d from dnchisq.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pnchisq.d from pnchisq.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qnchisq.d from qnchisq.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pnbeta.d from pnbeta.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making dnbeta.d from dnbeta.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pnf.d from pnf.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qnbeta.d from qnbeta.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qnt.d from qnt.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making pnt.d from pnt.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qnf.d from qnf.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making ptukey.d from ptukey.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making qtukey.d from qtukey.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making toms708.d from toms708.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making wilcox.d from wilcox.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making signrank.d from signrank.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' making std_unif.d from std_unif.c make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mlutils.c -o mlutils.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c d1mach.c -o d1mach.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c mlutils.c -o mlutils.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c i1mach.c -o i1mach.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c d1mach.c -o d1mach.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c i1mach.c -o i1mach.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fmin2.c -o fmin2.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fmax2.c -o fmax2.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fprec.c -o fprec.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fmax2.c -o fmax2.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fmin2.c -o fmin2.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fround.c -o fround.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fround.c -o fround.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ftrunc.c -o ftrunc.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sign.c -o sign.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fsign.c -o fsign.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c imax2.c -o imax2.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fprec.c -o fprec.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sign.c -o sign.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c fsign.c -o fsign.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ftrunc.c -o ftrunc.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c imax2.c -o imax2.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c log1p.c -o log1p.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c log1p.c -o log1p.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c imin2.c -o imin2.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c imin2.c -o imin2.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lgammacor.c -o lgammacor.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lgammacor.c -o lgammacor.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chebyshev.c -o chebyshev.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c stirlerr.c -o stirlerr.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gammalims.c -o gammalims.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c stirlerr.c -o stirlerr.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bd0.c -o bd0.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gamma.c -o gamma.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lgamma.c -o lgamma.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gamma_cody.c -o gamma_cody.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gammalims.c -o gammalims.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bd0.c -o bd0.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gamma.c -o gamma.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lgamma.c -o lgamma.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c gamma_cody.c -o gamma_cody.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c beta.c -o beta.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c chebyshev.c -o chebyshev.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lbeta.c -o lbeta.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c beta.c -o beta.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c polygamma.c -o polygamma.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c lbeta.c -o lbeta.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cospi.c -o cospi.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c cospi.c -o cospi.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c polygamma.c -o polygamma.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_i.c -o bessel_i.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_j.c -o bessel_j.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_i.c -o bessel_i.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_j.c -o bessel_j.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_k.c -o bessel_k.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c choose.c -o choose.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_y.c -o bessel_y.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c choose.c -o choose.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dgamma.c -o dgamma.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sexp.c -o sexp.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dgamma.c -o dgamma.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c sexp.c -o sexp.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c snorm.c -o snorm.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rgamma.c -o rgamma.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c snorm.c -o snorm.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_y.c -o bessel_y.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c bessel_k.c -o bessel_k.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dbeta.c -o dbeta.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pbeta.c -o pbeta.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rbeta.c -o rbeta.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dunif.c -o dunif.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rgamma.c -o rgamma.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pgamma.c -o pgamma.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qgamma.c -o qgamma.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c punif.c -o punif.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qunif.c -o qunif.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c runif.c -o runif.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pgamma.c -o pgamma.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qgamma.c -o qgamma.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rbeta.c -o rbeta.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnorm.c -o dnorm.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dunif.c -o dunif.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnorm.c -o pnorm.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnorm.c -o qnorm.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dbeta.c -o dbeta.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pbeta.c -o pbeta.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c punif.c -o punif.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnorm.c -o dnorm.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rnorm.c -o rnorm.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dlnorm.c -o dlnorm.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plnorm.c -o plnorm.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qlnorm.c -o qlnorm.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c runif.c -o runif.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rlnorm.c -o rlnorm.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qunif.c -o qunif.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnorm.c -o pnorm.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rnorm.c -o rnorm.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c df.c -o df.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qbeta.c -o qbeta.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnorm.c -o qnorm.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dlnorm.c -o dlnorm.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plnorm.c -o plnorm.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qbeta.c -o qbeta.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rlnorm.c -o rlnorm.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rf.c -o rf.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c df.c -o df.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qf.c -o qf.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pf.c -o pf.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qlnorm.c -o qlnorm.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pf.c -o pf.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qf.c -o qf.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rf.c -o rf.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnf.c -o dnf.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnf.c -o dnf.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dt.c -o dt.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pt.c -o pt.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rt.c -o rt.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnt.c -o dnt.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dchisq.c -o dchisq.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dt.c -o dt.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pt.c -o pt.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnt.c -o dnt.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rt.c -o rt.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qt.c -o qt.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pchisq.c -o pchisq.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qchisq.c -o qchisq.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rchisq.c -o rchisq.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pchisq.c -o pchisq.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dchisq.c -o dchisq.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rchisq.c -o rchisq.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rnchisq.c -o rnchisq.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dbinom.c -o dbinom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qchisq.c -o qchisq.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rnchisq.c -o rnchisq.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pbinom.c -o pbinom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dbinom.c -o dbinom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rmultinom.c -o rmultinom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dcauchy.c -o dcauchy.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pbinom.c -o pbinom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rbinom.c -o rbinom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rmultinom.c -o rmultinom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rbinom.c -o rbinom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pcauchy.c -o pcauchy.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dcauchy.c -o dcauchy.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qcauchy.c -o qcauchy.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rcauchy.c -o rcauchy.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dexp.c -o dexp.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qt.c -o qt.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qbinom.c -o qbinom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pcauchy.c -o pcauchy.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qbinom.c -o qbinom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pexp.c -o pexp.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qcauchy.c -o qcauchy.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rcauchy.c -o rcauchy.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pexp.c -o pexp.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qexp.c -o qexp.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dexp.c -o dexp.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rexp.c -o rexp.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dgeom.c -o dgeom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pgeom.c -o pgeom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rgeom.c -o rgeom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rexp.c -o rexp.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qexp.c -o qexp.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rgeom.c -o rgeom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qgeom.c -o qgeom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dgeom.c -o dgeom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dhyper.c -o dhyper.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pgeom.c -o pgeom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c phyper.c -o phyper.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qgeom.c -o qgeom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c phyper.c -o phyper.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qhyper.c -o qhyper.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dhyper.c -o dhyper.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rhyper.c -o rhyper.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qhyper.c -o qhyper.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnbinom.c -o dnbinom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnbinom.c -o pnbinom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rhyper.c -o rhyper.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dpois.c -o dpois.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnbinom.c -o qnbinom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dpois.c -o dpois.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ppois.c -o ppois.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnbinom.c -o dnbinom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnbinom_mu.c -o qnbinom_mu.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rnbinom.c -o rnbinom.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qpois.c -o qpois.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dweibull.c -o dweibull.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qpois.c -o qpois.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnbinom.c -o pnbinom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ppois.c -o ppois.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pweibull.c -o pweibull.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnbinom.c -o qnbinom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rnbinom.c -o rnbinom.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pweibull.c -o pweibull.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qweibull.c -o qweibull.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnbinom_mu.c -o qnbinom_mu.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rpois.c -o rpois.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dweibull.c -o dweibull.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dlogis.c -o dlogis.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qweibull.c -o qweibull.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rweibull.c -o rweibull.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rpois.c -o rpois.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rweibull.c -o rweibull.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rlogis.c -o rlogis.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dlogis.c -o dlogis.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plogis.c -o plogis.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c plogis.c -o plogis.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qlogis.c -o qlogis.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c rlogis.c -o rlogis.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnbeta.c -o dnbeta.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnchisq.c -o qnchisq.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnbeta.c -o qnbeta.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qlogis.c -o qlogis.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnchisq.c -o pnchisq.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnchisq.c -o pnchisq.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnf.c -o pnf.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnchisq.c -o dnchisq.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnchisq.c -o dnchisq.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnbeta.c -o qnbeta.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnbeta.c -o pnbeta.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnf.c -o qnf.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnbeta.c -o pnbeta.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnf.c -o pnf.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnt.c -o qnt.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c dnbeta.c -o dnbeta.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnchisq.c -o qnchisq.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnt.c -o pnt.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnt.c -o qnt.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qtukey.c -o qtukey.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ptukey.c -o ptukey.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c std_unif.c -o std_unif.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c std_unif.c -o std_unif.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qnf.c -o qnf.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c pnt.c -o pnt.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c qtukey.c -o qtukey.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c wilcox.c -o wilcox.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c wilcox.c -o wilcox.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c signrank.c -o signrank.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c ptukey.c -o ptukey.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c signrank.c -o signrank.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c toms708.c -o toms708.o make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fpic -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -c toms708.c -o toms708.lo make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' gcc -shared -fopenmp -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo qnbinom_mu.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o qnbinom_mu.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone' + popd ~/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2 + /usr/bin/make -O -j16 V=1 VERBOSE=1 pdf make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' creating doc/manual/version.tex make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'compiler' ... 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Converting parsed Rd's to LaTeX .......... make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'lattice' ... Converting parsed Rd's to LaTeX ...... make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'tools' ... Converting parsed Rd's to LaTeX ...... make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'codetools' ... 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Converting parsed Rd's to LaTeX . make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'MASS' ... Converting parsed Rd's to LaTeX ............... make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'KernSmooth' ... Converting parsed Rd's to LaTeX make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'class' ... Converting parsed Rd's to LaTeX . make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'graphics' ... Converting parsed Rd's to LaTeX ....... make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'nnet' ... Converting parsed Rd's to LaTeX make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'boot' ... Converting parsed Rd's to LaTeX ........ make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'rpart' ... Converting parsed Rd's to LaTeX .. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'spatial' ... Converting parsed Rd's to LaTeX .. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'survival' ... Converting parsed Rd's to LaTeX ............. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'utils' ... Converting parsed Rd's to LaTeX ................ make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'methods' ... Converting parsed Rd's to LaTeX ........ make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'Matrix' ... Converting parsed Rd's to LaTeX ............ make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'nlme' ... Converting parsed Rd's to LaTeX ............................ make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'mgcv' ... Converting parsed Rd's to LaTeX ............... make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-FAQ.t2d/p df/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) [1{/usr/share/texmf-dist/fonts/ map/pdftex/updmap/pdftex.map}] [-1] Chapter 1 Chapter 2 [1] Cross reference values unknown; you must run TeX again. [2] Underfull \hbox (badness 10000) in paragraph at lines 294--323 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 658--663 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1819--1819 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3135--3149 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (49 pages, 351498 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-FAQ.t2d/p df/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) [1{/usr/share/texmf-dist/fonts/ map/pdftex/updmap/pdftex.map}] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-FAQ.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-FAQ.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-FAQ.toc) Chapter 1 (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-FAQ.aux) Chapter 2 [1] [2] Underfull \hbox (badness 10000) in paragraph at lines 294--323 @textrm and sparc @reducedrm CPU[]@textrm s (e.g., [][]@texttt https:// buildd . debian. org/ build. php? & pkg=r-base[][]@textrm ), [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 658--663 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 @texttt Commercialized_versions_of_R[][] @textrm for point-ers to com-mer-cial- ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] Overfull \hbox (14.27353pt too wide) in paragraph at lines 1819--1819 []@smalltt MASS Support Functions and Datasets for Venables and Riple y s MASS[] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3135--3149 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] [41] Chapter 8 [42] Chapter 9 [43] [44] [45] Chapter 10 [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 368664 bytes). Transcript written on R-FAQ.log. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.t2d /pdf/xtr/R-admin.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] [17] Chapter 4 [18] [19] [20] Chapter 5 [21] Chapter 6 [22] [23] [24] [25] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2210--2210 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran - lquadmath[] [26] [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] Appendix A [37] [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3230--3230 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3444--3446 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [42] [43] [44] [45] [46] [47] [48] [49] [50] Appendix B [51] [52] [53] [54] [55] Appendix C [56] [57] [58] [59] [60] [61] Overfull \hbox (101.2292pt too wide) in paragraph at lines 5191--5191 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/pcre2-10.42-da rwin.20-arm64.tar.xz[] Overfull \hbox (83.98314pt too wide) in paragraph at lines 5193--5193 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/xz-5.4.2-darwi n.20-arm64.tar.xz[] [62] [63] Overfull \hbox (39.30717pt too wide) in paragraph at lines 5314--5314 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.1-darwin.20 -arm64.tar.gz[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 5351--5351 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (17.16873pt too wide) in paragraph at lines 5360--5361 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [64] [65] [66] Overfull \hbox (51.1502pt too wide) in paragraph at lines 5632--5632 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| [67] [68] [69] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5898--5898 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5903--5903 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] [70] Overfull \hbox (50.80455pt too wide) in paragraph at lines 5944--5944 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [71] (Function and variable index) [72] No file R-admin.vrs. (Concept index) [73] No file R-admin.cps. (Environment variable index) [74] No file R-admin.ens. [75] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one < /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmti9.pfb> Output written on R-admin.pdf (78 pages, 466706 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.t2d /pdf/xtr/R-admin.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-admin.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.toc ) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.toc [-1] [-2]) [-3] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.toc ) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.toc ) Chapter 1 (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.aux ) Writing index file R-admin.cp Writing index file R-admin.en [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] [17] Chapter 4 [18] [19] [20] Chapter 5 [21] Chapter 6 [22] [23] [24] [25] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2210--2210 []@texttt FLIBS = -L/Library/Frameworks/R.framework/Resources/lib -lgfortran - lquadmath[] [26] [27] [28] [29] [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36] Appendix A [37] [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3230--3230 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [40] [41] Underfull \hbox (badness 10000) in paragraph at lines 3444--3446 []@textrm Library @texttt libdeflate[] @textrm ([][]@texttt https:// github. com/ ebiggers/ libdeflate[][]@textrm ) is used by [42] [43] [44] [45] [46] [47] [48] [49] [50] Appendix B [51] [52] [53] [54] [55] Appendix C [56] [57] [58] [59] [60] [61] Overfull \hbox (101.2292pt too wide) in paragraph at lines 5191--5191 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/pcre2-10.42-da rwin.20-arm64.tar.xz[] Overfull \hbox (83.98314pt too wide) in paragraph at lines 5193--5193 []@texttt curl -OL https://mac.r-project.org/bin/darwin20/arm64/xz-5.4.2-darwi n.20-arm64.tar.xz[] [62] l.5240: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5240: Undefined cross reference ` Tcl/Tk headers and libraries-snt'. l.5240: Undefined cross reference ` Tcl/Tk headers and libraries-pg'. [63] Overfull \hbox (39.30717pt too wide) in paragraph at lines 5314--5314 []@texttt curl -OL https://mac.r-project.org/tools/subversion-1.14.1-darwin.20 -arm64.tar.gz[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 5351--5351 [] @texttt could not create compact unwind for _arcoef_: registers 23 and 24 not saved contiguously in frame[] Overfull \hbox (17.16873pt too wide) in paragraph at lines 5360--5361 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][]@smallrm .| [64] [65] [66] Overfull \hbox (51.1502pt too wide) in paragraph at lines 5632--5632 [][][][][]@smalltt https:// cran. r-project. org/ bin/ macosx/ RMacOSX-FA Q. html# Which-BLAS-is-used-and-how-can-it-be-changed_003f[][]| [67] [68] [69] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5898--5898 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libgfortran.5. dylib \[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5903--5903 []@texttt /opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0/libquadmath.0. dylib \[] [70] Overfull \hbox (50.80455pt too wide) in paragraph at lines 5944--5944 []@texttt FC="/opt//gfortran/bin/gfortran -arch x86_64 -mtune=native -mmacosx- version-min=11"[] [71] (Function and variable index) [72] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.vrs ) (Concept index) [73] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.cps ) (Environment variable index) [74] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-admin.ens ) [75] ) (see the transcript file for additional information) pdfTeX warning (dest): name{\040Tcl/Tk\040headers\040and\040libraries} has been referenced but does not exist, replaced by a fixed one Output written on R-admin.pdf (80 pages, 510333 bytes). Transcript written on R-admin.log. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.t2d /pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] Chapter 13 [74] [75] Chapter 14 [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6653--6658 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6653--6658 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [78] Appendix A [79] [80] [81] Appendix B [82] [83] [84] [85] [86] [87] [88] Appendix C [89] [90] Appendix D [91] No file R-intro.vrs. Appendix E [92] No file R-intro.cps. Appendix F [93] [94] ) (see the transcript file for additional information) Output written on R-intro.pdf (97 pages, 566962 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.t2d /pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.toc ) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.toc ) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.toc ) (Preface) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.aux ) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] Chapter 13 [74] [75] Chapter 14 [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6653--6658 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6653--6658 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [78] Appendix A [79] [80] [81] Appendix B [82] [83] [84] [85] [86] [87] [88] Appendix C [89] [90] Appendix D [91] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.vrs [92] [93]) Appendix E [94] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.cps [95]) Appendix F [96] [97] ) (see the transcript file for additional information) Output written on R-intro.pdf (103 pages, 619031 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.t2d /pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-intro.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.toc ) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.toc ) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.toc ) (Preface) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.aux ) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] Chapter 9 [38] [39] Chapter 10 [40] [41] [42] [43] [44] [45] [46] [47] [48] Chapter 11 [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] Chapter 12 [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] Chapter 13 [74] [75] Chapter 14 [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6653--6658 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6653--6658 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [78] Appendix A [79] [80] [81] Appendix B [82] [83] [84] [85] [86] [87] [88] Appendix C [89] [90] Appendix D [91] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.vrs [92] [93]) Appendix E [94] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-intro.cps [95]) Appendix F [96] [97] ) (see the transcript file for additional information) Output written on R-intro.pdf (103 pages, 619029 bytes). Transcript written on R-intro.log. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.t2d/ pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 453--457 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] No file R-data.vrs. (Concept index) [29] No file R-data.cps. [30] ) (see the transcript file for additional information) Output written on R-data.pdf (33 pages, 263542 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.t2d/ pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.toc [-1]) [-2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.toc) (Acknowledgements) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 453--457 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.vrs [29]) (Concept index) [30] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 299644 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.t2d/ pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-data.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.toc [-1]) [-2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.toc) (Acknowledgements) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 453--457 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.vrs [29]) (Concept index) [30] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 299649 bytes). Transcript written on R-data.log. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.t2d/ pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1498--1498 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1499--1499 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1501--1501 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [45] Chapter 8 [46] Underfull \hbox (badness 10000) in paragraph at lines 3978--3982 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [47] Underfull \hbox (badness 10000) in paragraph at lines 4012--4017 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60] Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64] (Function and variable index) [65] No file R-ints.vrs. (Concept index) [66] No file R-ints.cps. [67] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb> Output written on R-ints.pdf (70 pages, 416732 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.t2d/ pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.toc [-1]) [-2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.toc) Chapter 1 (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1498--1498 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1499--1499 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1501--1501 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [45] Chapter 8 [46] Underfull \hbox (badness 10000) in paragraph at lines 3978--3982 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [47] Underfull \hbox (badness 10000) in paragraph at lines 4012--4017 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60] Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64] (Function and variable index) [65] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.vrs [66]) (Concept index) [67] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.cps) [68] ) (see the transcript file for additional information) Output written on R-ints.pdf (72 pages, 464386 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.t2d/ pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-ints.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.toc [-1]) [-2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.toc) Chapter 1 (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1498--1498 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1499--1499 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1500--1500 [] @texttt length(meth.Ops <- nM$^^R.__T__Ops:base^^R) # 71 methods for the Ops (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1501--1501 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] Chapter 7 [44] Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3791--3800 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [45] Chapter 8 [46] Underfull \hbox (badness 10000) in paragraph at lines 3978--3982 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [47] Underfull \hbox (badness 10000) in paragraph at lines 4012--4017 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [48] [49] [50] [51] [52] [53] [54] [55] [56] [57] [58] Chapter 9 [59] [60] Chapter 10 [61] Chapter 11 [62] Chapter 12 [63] [64] (Function and variable index) [65] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.vrs [66]) (Concept index) [67] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-ints.cps) [68] ) (see the transcript file for additional information) Output written on R-ints.pdf (72 pages, 464390 bytes). Transcript written on R-ints.log. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX ............................... make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.t2d/ pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4396--4398 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] No file R-lang.vrs. (Concept Index) [52] No file R-lang.cps. Appendix A [53] [54] ) (see the transcript file for additional information) Output written on R-lang.pdf (57 pages, 345159 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.t2d/ pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.toc [-1] [-2]) [-3] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.toc) Chapter 1 (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4396--4398 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 386973 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.t2d/ pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-lang.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.toc [-1] [-2]) [-3] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.toc) Chapter 1 (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 306--307 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4396--4398 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 386954 bytes). Transcript written on R-lang.log. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.t2d/ pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 508--511 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1318--1319 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1320 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1332--1333 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1333--1334 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt ~/.R/Makevars.win64[]@textrm , [15] [16] [17] [18] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1602--1602 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1603--1603 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [19] Underfull \hbox (badness 10000) in paragraph at lines 1702--1712 [][]@texttt https:// sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tktable2. 10. tar. gz/ [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2692--2692 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2694--2694 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2963--2966 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [34] Underfull \hbox (badness 10000) in paragraph at lines 3045--3051 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [35] Overfull \hbox (39.30717pt too wide) in paragraph at lines 3132--3132 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 3276--3280 @textrm ([][]@texttt https:// cmake. org/ cmake/ help/ latest/ manual/ c make-env-variables. 7. html# [38] Overfull \hbox (22.06111pt too wide) in paragraph at lines 3377--3377 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] Overfull \hbox (59.67485pt too wide) in paragraph at lines 5013--5013 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 5032--5032 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [57] [58] [59] [60] [61] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5499--5499 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5501--5501 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 5502--5502 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] [62] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5517--5517 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] Underfull \hbox (badness 7558) in paragraph at lines 5575--5579 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6059--6062 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [69] [70] Overfull \hbox (32.24495pt too wide) in paragraph at lines 6283--6283 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [71] [72] Overfull \hbox (26.49626pt too wide) in paragraph at lines 6425--6425 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (72.48576pt too wide) in paragraph at lines 6452--6452 [] @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), ( double) nelem);[] Underfull \hbox (badness 10000) in paragraph at lines 6485--6486 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7150--7160 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[]) and RForge Chapter 2 [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 8216--8223 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8396--8402 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of Underfull \hbox (badness 10000) in paragraph at lines 8428--8433 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [96] [97] [98] Chapter 3 [99] [100] [101] [102] [103] [104] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9199--9199 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [105] Chapter 4 [106] [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9646--9655 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9916--9928 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9932--9933 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [114] Overfull \hbox (56.55324pt too wide) in paragraph at lines 10071--10071 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] [115] Underfull \hbox (badness 10000) in paragraph at lines 10104--10107 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by Underfull \hbox (badness 10000) in paragraph at lines 10104--10107 @texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and we have seen [116] Overfull \hbox (91.04536pt too wide) in paragraph at lines 10219--10219 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 10220--10220 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (160.02962pt too wide) in paragraph at lines 10223--10223 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10231--10231 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] [117] Overfull \hbox (50.80455pt too wide) in paragraph at lines 10286--10286 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 10656--10658 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [122] Overfull \hbox (102.54274pt too wide) in paragraph at lines 10723--10723 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 10742--10742 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 10753--10753 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] [123] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10783--10783 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (30.03963pt too wide) in paragraph at lines 11663--11663 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [134] [135] Overfull \hbox (39.30717pt too wide) in paragraph at lines 11827--11827 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [136] [137] [138] [139] [140] Overfull \hbox (16.31242pt too wide) in paragraph at lines 12264--12264 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Underfull \hbox (badness 10000) in paragraph at lines 13285--13289 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14385--14385 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [164] Overfull \hbox (50.80455pt too wide) in paragraph at lines 14480--14480 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [165] Chapter 6 [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] Warning: unbalanced parentheses in @def... [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16619--16625 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [190] [191] Chapter 8 [192] [193] [194] Overfull \hbox (22.06111pt too wide) in paragraph at lines 17040--17040 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [195] Overfull \hbox (33.55849pt too wide) in paragraph at lines 17098--17098 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [196] [197] [198] [199] [200] [201] Underfull \hbox (badness 10000) in paragraph at lines 17618--17625 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [202] [203] (Function and variable index) [204] No file R-exts.vrs. (Concept index) [205] No file R-exts.cps. [206] ) (see the transcript file for additional information) Output written on R-exts.pdf (209 pages, 982105 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.t2d/ pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.toc) (Acknowledgements) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 508--511 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1318--1319 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1320 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1332--1333 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1333--1334 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt ~/.R/Makevars.win64[]@textrm , [15] [16] [17] [18] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1602--1602 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1603--1603 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [19] Underfull \hbox (badness 10000) in paragraph at lines 1702--1712 [][]@texttt https:// sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tktable2. 10. tar. gz/ [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2692--2692 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2694--2694 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2963--2966 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [34] Underfull \hbox (badness 10000) in paragraph at lines 3045--3051 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [35] Overfull \hbox (39.30717pt too wide) in paragraph at lines 3132--3132 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 3276--3280 @textrm ([][]@texttt https:// cmake. org/ cmake/ help/ latest/ manual/ c make-env-variables. 7. html# [38] Overfull \hbox (22.06111pt too wide) in paragraph at lines 3377--3377 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] Overfull \hbox (59.67485pt too wide) in paragraph at lines 5013--5013 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 5032--5032 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [57] [58] [59] [60] [61] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5499--5499 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5501--5501 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 5502--5502 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5517--5517 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [62] Underfull \hbox (badness 7558) in paragraph at lines 5575--5579 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6059--6062 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [69] [70] Overfull \hbox (32.24495pt too wide) in paragraph at lines 6283--6283 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [71] [72] Overfull \hbox (26.49626pt too wide) in paragraph at lines 6425--6425 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (72.48576pt too wide) in paragraph at lines 6452--6452 [] @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), ( double) nelem);[] Underfull \hbox (badness 10000) in paragraph at lines 6485--6486 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7150--7160 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[]) and RForge Chapter 2 [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 8216--8223 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8396--8402 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of Underfull \hbox (badness 10000) in paragraph at lines 8428--8433 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [96] [97] [98] Chapter 3 [99] [100] [101] [102] [103] [104] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9199--9199 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [105] Chapter 4 [106] [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9646--9655 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9916--9928 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9932--9933 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [114] Overfull \hbox (56.55324pt too wide) in paragraph at lines 10071--10071 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] [115] Underfull \hbox (badness 10000) in paragraph at lines 10104--10107 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by Underfull \hbox (badness 10000) in paragraph at lines 10104--10107 @texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and we have seen [116] Overfull \hbox (91.04536pt too wide) in paragraph at lines 10219--10219 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 10220--10220 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (160.02962pt too wide) in paragraph at lines 10223--10223 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10231--10231 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] [117] Overfull \hbox (50.80455pt too wide) in paragraph at lines 10286--10286 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 10656--10658 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [122] Overfull \hbox (102.54274pt too wide) in paragraph at lines 10723--10723 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 10742--10742 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 10753--10753 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] [123] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10783--10783 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (30.03963pt too wide) in paragraph at lines 11663--11663 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [134] [135] Overfull \hbox (39.30717pt too wide) in paragraph at lines 11827--11827 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [136] [137] [138] [139] [140] Overfull \hbox (16.31242pt too wide) in paragraph at lines 12264--12264 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Underfull \hbox (badness 10000) in paragraph at lines 13285--13289 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14385--14385 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [164] Overfull \hbox (50.80455pt too wide) in paragraph at lines 14480--14480 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [165] Chapter 6 [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] Warning: unbalanced parentheses in @def... [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16619--16625 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [190] [191] Chapter 8 [192] [193] [194] Overfull \hbox (22.06111pt too wide) in paragraph at lines 17040--17040 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [195] Overfull \hbox (33.55849pt too wide) in paragraph at lines 17098--17098 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [196] [197] [198] [199] [200] [201] Underfull \hbox (badness 10000) in paragraph at lines 17618--17625 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [202] [203] (Function and variable index) [204] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.vrs [205] [206] [207] [208]) (Concept index) [209] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.cps [210]) [211] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb> Output written on R-exts.pdf (218 pages, 1048329 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.t2d/ pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2024-02-10.22]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, microtype, and turning on texinfo input format.) Writing index file R-exts.vr (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/version.tex i) [1{/usr/share/texmf-dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.toc [-1] [-2] [-3] [-4]) [-5] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.toc) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.toc) (Acknowledgements) (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 508--511 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] Underfull \hbox (badness 10000) in paragraph at lines 1318--1319 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1319--1320 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1324--1326 @texttt ~/.R/Makevars.win64[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1332--1333 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1333--1334 @texttt R_MAKEVARS_SITE[]@textrm , @textttsl R_HOME@texttt /etc/@textttsl R_ Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt R_MAKEVARS_USER[]@textrm , @texttt ~/.R/Makevars.ucrt[]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 1338--1340 @texttt ~/.R/Makevars.win64[]@textrm , [15] [16] [17] [18] Overfull \hbox (73.7993pt too wide) in paragraph at lines 1602--1602 [] @texttt "--no-libs", "--no-help", "--no-demo", "--no-exec" , "--no-test-load")[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 1603--1603 [] @texttt install.packages(pkg, lib, INSTALL_opts = opts, repos = NULL , quiet = TRUE)[] [19] Underfull \hbox (badness 10000) in paragraph at lines 1702--1712 [][]@texttt https:// sourceforge. net/ projects/ tktable/ files/ tktable/ 2. 10/ Tktable2. 10. tar. gz/ [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2692--2692 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2694--2694 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [31] [32] [33] Underfull \hbox (badness 10000) in paragraph at lines 2963--2966 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [34] Underfull \hbox (badness 10000) in paragraph at lines 3045--3051 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][] @smallrm or [35] Overfull \hbox (39.30717pt too wide) in paragraph at lines 3132--3132 [] @texttt CXX="$(CXX17) $(CXX17STD)" CXXFLAGS="$(CXX17FLAGS) $(CXX 17PICFLAGS)")[] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 3276--3280 @textrm ([][]@texttt https:// cmake. org/ cmake/ help/ latest/ manual/ c make-env-variables. 7. html# [38] Overfull \hbox (22.06111pt too wide) in paragraph at lines 3377--3377 []@texttt if test -z "$CMAKE"; then CMAKE=/Applications/CMake.app/Contents/bin /cmake; fi[] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] [51] [52] [53] [54] [55] [56] Overfull \hbox (59.67485pt too wide) in paragraph at lines 5013--5013 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 5032--5032 []@texttt CXXFLAGS = ^^R"${RBIN}" CMD config CXXFLAGS^^R ^^R"${RBIN}" CMD conf ig CXXPICFLAGS^^R[] [57] [58] [59] [60] [61] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5499--5499 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 5501--5501 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 5502--5502 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 5517--5517 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [62] Underfull \hbox (badness 7558) in paragraph at lines 5575--5579 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [63] [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6059--6062 @texttt gcc/ C-Extensions. html[][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [69] [70] Overfull \hbox (32.24495pt too wide) in paragraph at lines 6283--6283 []@texttt register storage class specifier is deprecated and incompatible with C++17[] [71] [72] Overfull \hbox (26.49626pt too wide) in paragraph at lines 6425--6425 []@texttt !DEC$ ATTRIBUTES DLLEXPORT,C,REFERENCE,ALIAS: kdenestmlcvb :: kdenestmlcvb[] Overfull \hbox (72.48576pt too wide) in paragraph at lines 6452--6452 [] @texttt error("Actual: %0.f; Expected %0.f\n", (double) XLENGTH(Robj), ( double) nelem);[] Underfull \hbox (badness 10000) in paragraph at lines 6485--6486 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7150--7160 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[]) and RForge Chapter 2 [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 8216--8223 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [94] [95] Underfull \hbox (badness 10000) in paragraph at lines 8396--8402 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of Underfull \hbox (badness 10000) in paragraph at lines 8428--8433 []@texttt echo=FALSE[] @textrm Whether the R code should be echoed. If @texttt TRUE[] @textit and [96] [97] [98] Chapter 3 [99] [100] [101] [102] [103] [104] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9199--9199 []@texttt 5497 1.9783 R findVarLocInFrame.part.0. lto_priv.0[] [105] Chapter 4 [106] [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9646--9655 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [111] [112] [113] Underfull \hbox (badness 10000) in paragraph at lines 9916--9928 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 9932--9933 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [114] Overfull \hbox (56.55324pt too wide) in paragraph at lines 10071--10071 []@texttt setenv ASAN_OPTIONS alloc_dealloc_mismatch=0:detect_leaks=0:detect_odr_violation=0 [] [115] Underfull \hbox (badness 10000) in paragraph at lines 10104--10107 []@textrm This san-i-tizer may be com-bined with the Ad-dress San-i-tizer by Underfull \hbox (badness 10000) in paragraph at lines 10104--10107 @texttt -fsanitize=undefined,address[] @textrm (where both are sup-ported, and we have seen [116] Overfull \hbox (91.04536pt too wide) in paragraph at lines 10219--10219 []@texttt CC = clang -fsanitize=undefined -fno-sanitize=float-divide-by-zero - fno-omit-frame-pointer[] Overfull \hbox (148.53224pt too wide) in paragraph at lines 10220--10220 []@texttt CXX = clang++ -fsanitize=undefined -fno-sanitize=float-divide-by-zer o -fno-omit-frame-pointer -frtti[] Overfull \hbox (160.02962pt too wide) in paragraph at lines 10223--10223 []@texttt SAN_LIBS = $(UBSAN_DIR)/libclang_rt.ubsan_standalone.a $(UBSAN_DIR)/ libclang_rt.ubsan_standalone_cxx.a[] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10231--10231 []@texttt SAN_LIBS = -L$(UBSAN_DIR) -Wl,-rpath,$(UBSAN_DIR) -lclang_rt.ubsan_s tandalone[] [117] Overfull \hbox (50.80455pt too wide) in paragraph at lines 10286--10286 []@texttt Fortran runtime error: Index 1 of dimension 1 of array x above upper bound of 0[] [118] [119] [120] [121] Underfull \hbox (badness 10000) in paragraph at lines 10656--10658 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][]@smallrm : [122] Overfull \hbox (102.54274pt too wide) in paragraph at lines 10723--10723 []@texttt boot.f:61: warning: type of ddot does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 10742--10742 []@texttt rkpk2.f:77:5: warning: type of dstup does not match original declaration [-Wlto-type-mismatch][] Overfull \hbox (119.7888pt too wide) in paragraph at lines 10753--10753 []@texttt reg.f:78:33: warning: type of dqrdc does not match original declaration [-Wlto-type-mismatch][] [123] Overfull \hbox (22.06111pt too wide) in paragraph at lines 10783--10783 []@texttt Warning: Type mismatch in argument jpvt at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] Overfull \hbox (30.03963pt too wide) in paragraph at lines 11663--11663 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [134] [135] Overfull \hbox (39.30717pt too wide) in paragraph at lines 11827--11827 [] @texttt na_omit_xts_func fun = (na_omit_xts_func) R_GetCCallable("xts", "n a_omit_xts");[] [136] [137] [138] [139] [140] Overfull \hbox (16.31242pt too wide) in paragraph at lines 12264--12264 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Underfull \hbox (badness 10000) in paragraph at lines 13285--13289 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14385--14385 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [164] Overfull \hbox (50.80455pt too wide) in paragraph at lines 14480--14480 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [165] Chapter 6 [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] [181] [182] [183] Warning: unbalanced parentheses in @def... [184] [185] [186] [187] [188] [189] Underfull \hbox (badness 10000) in paragraph at lines 16619--16625 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [190] [191] Chapter 8 [192] [193] [194] Overfull \hbox (22.06111pt too wide) in paragraph at lines 17040--17040 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [195] Overfull \hbox (33.55849pt too wide) in paragraph at lines 17098--17098 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [196] [197] [198] [199] [200] [201] Underfull \hbox (badness 10000) in paragraph at lines 17618--17625 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [202] [203] (Function and variable index) [204] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.vrs [205] [206] [207] [208]) (Concept index) [209] (/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual/R-exts.cps [210]) [211] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmr8.pfb>< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt9.pfb> Output written on R-exts.pdf (218 pages, 1048402 bytes). Transcript written on R-exts.log. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX ............................................ make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' PDF/LaTeX documentation: full reference index ... 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This reads the Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [113] [114] [115] Underfull \vbox (badness 10000) has occurred while \output is active [116] [117] [118] [119] [120] [121] [122] [123] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [124] [125] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [126] [127] [128] [129] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [130] [131] [132] [133] [134] [135] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] Underfull \hbox (badness 2744) in paragraph at lines 12533--12535 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [181] [182] [183] [184] [185] [186] [187] Underfull \vbox (badness 10000) has occurred while \output is active [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \hbox (badness 2253) in paragraph at lines 14737--14739 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see Underfull \hbox (badness 1490) in paragraph at lines 14772--14775 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [211] Underfull \hbox (badness 1565) in paragraph at lines 14854--14858 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [212] Underfull \hbox (badness 4927) in paragraph at lines 14905--14907 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [213] [214] Underfull \hbox (badness 1466) in paragraph at lines 15056--15059 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [215] Underfull \vbox (badness 1418) has occurred while \output is active [216] Underfull \hbox (badness 10000) in paragraph at lines 15187--15191 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15198--15201 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [217] [218] [219] [220] Underfull \hbox (badness 3965) in paragraph at lines 15493--15497 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 5260) in paragraph at lines 15995--15995 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [229] [230] [231] [232] Underfull \hbox (badness 4429) in paragraph at lines 16285--16288 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [233] Underfull \hbox (badness 10000) in paragraph at lines 16392--16394 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [234] Underfull \hbox (badness 2035) in paragraph at lines 16465--16469 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 2452) in paragraph at lines 17088--17092 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17088--17092 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [245] [246] Underfull \hbox (badness 1092) in paragraph at lines 17262--17267 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [247] [248] [249] [250] Underfull \hbox (badness 6741) in paragraph at lines 17515--17519 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [251] [252] [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] Underfull \vbox (badness 10000) has occurred while \output is active [261] Underfull \vbox (badness 10000) has occurred while \output is active [262] [263] [264] [265] [266] [267] [268] [269] [270] [271] Underfull \hbox (badness 1769) in paragraph at lines 18988--18991 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [272] [273] [274] [275] Underfull \hbox (badness 10000) in paragraph at lines 19297--19299 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19303--19312 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [276] [277] [278] [279] [280] [281] [282] [283] [284] Underfull \hbox (badness 1442) in paragraph at lines 19911--19913 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [285] Underfull \hbox (badness 2452) in paragraph at lines 20007--20033 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 20007--20033 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [286] [287] [288] [289] [290] [291] Underfull \hbox (badness 1248) in paragraph at lines 20405--20408 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [292] [293] [294] [295] Underfull \hbox (badness 4739) in paragraph at lines 20672--20674 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 2469) in paragraph at lines 21830--21835 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [313] Underfull \hbox (badness 1675) in paragraph at lines 21917--21926 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , [314] Underfull \hbox (badness 3189) in paragraph at lines 21927--21940 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21975--21978 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21975--21978 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [315] [316] Underfull \hbox (badness 1014) in paragraph at lines 22109--22114 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] Underfull \hbox (badness 1264) in paragraph at lines 22956--22964 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [329] Underfull \hbox (badness 4441) in paragraph at lines 22991--22994 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] Underfull \hbox (badness 5231) in paragraph at lines 23809--23811 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355] [356] [357] Underfull \hbox (badness 6380) in paragraph at lines 24919--24925 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24919--24925 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 2790) in paragraph at lines 25432--25435 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25432--25435 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [366] [367] [368] [369] Underfull \hbox (badness 1194) in paragraph at lines 25760--25763 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [370] [371] [372] Underfull \hbox (badness 2368) in paragraph at lines 25967--25973 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 10000) in paragraph at lines 26357--26360 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [379] [380] [381] [382] [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 26985--26987 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [388] [389] [390] [391] [392] [393] [394] Underfull \hbox (badness 2443) in paragraph at lines 27476--27484 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [395] [396] [397] [398] [399] [400] Underfull \hbox (badness 1881) in paragraph at lines 27906--27909 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [401] Underfull \hbox (badness 6220) in paragraph at lines 27931--27933 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [402] Underfull \hbox (badness 2142) in paragraph at lines 28072--28076 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [403] Underfull \hbox (badness 1968) in paragraph at lines 28129--28134 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [404] [405] [406] Underfull \hbox (badness 10000) in paragraph at lines 28425--28431 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28425--28431 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28425--28431 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28438--28441 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28464--28466 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [407] Underfull \hbox (badness 10000) in paragraph at lines 28510--28515 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28516--28527 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28516--28527 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28528--28531 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [408] [409] [410] [411] [412] Underfull \hbox (badness 10000) in paragraph at lines 28946--28950 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [413] [414] Underfull \hbox (badness 10000) in paragraph at lines 29093--29096 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [415] [416] Underfull \hbox (badness 7925) in paragraph at lines 29174--29178 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29174--29178 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29179--29188 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Underfull \hbox (badness 2726) in paragraph at lines 30193--30196 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] Underfull \vbox (badness 10000) has occurred while \output is active [449] [450] [451] [452] [453] [454] [455] [456] Underfull \hbox (badness 1533) in paragraph at lines 32001--32004 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [457] [458] [459] Underfull \hbox (badness 1163) in paragraph at lines 32172--32183 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [460] [461] [462] [463] [464] [465] [466] [467] Underfull \hbox (badness 6300) in paragraph at lines 32718--32720 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] Underfull \hbox (badness 10000) in paragraph at lines 33841--33845 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33841--33845 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33862--33864 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33865--33869 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [484] [485] [486] [487] [488] [489] [490] [491] [492] Underfull \hbox (badness 1655) in paragraph at lines 34467--34469 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] Underfull \hbox (badness 2261) in paragraph at lines 35670--35675 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] Underfull \hbox (badness 3668) in paragraph at lines 36705--36709 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [525] Underfull \hbox (badness 10000) in paragraph at lines 36796--36807 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] Underfull \hbox (badness 10000) in paragraph at lines 38428--38430 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [550] [551] [552] [553] [554] Underfull \hbox (badness 2913) in paragraph at lines 38846--38850 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [555] [556] [557] [558] Underfull \hbox (badness 1072) in paragraph at lines 39092--39096 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 39097--39101 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39137--39143 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39137--39143 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39137--39143 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39152--39159 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39152--39159 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39152--39159 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39152--39159 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [559] [560] [561] [562] Underfull \hbox (badness 2644) in paragraph at lines 39387--39391 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] Underfull \hbox (badness 1158) in paragraph at lines 40915--40917 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [585] [586] [587] [588] [589] [590] [591] [592] [593] Underfull \hbox (badness 1137) in paragraph at lines 41515--41521 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41533--41538 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [594] [595] Underfull \hbox (badness 1616) in paragraph at lines 41653--41658 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1472) in paragraph at lines 42199--42202 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [604] [605] [606] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42411. [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] Underfull \vbox (badness 10000) has occurred while \output is active [617] Underfull \hbox (badness 10000) in paragraph at lines 43150--43154 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [618] [619] [620] [621] [622] Underfull \hbox (badness 10000) in paragraph at lines 43509--43512 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [623] [624] [625] Underfull \hbox (badness 10000) in paragraph at lines 43693--43697 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [626] [627] [628] [629] [630] [631] [632] [633] [634] Underfull \hbox (badness 10000) in paragraph at lines 44341--44344 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] [647] Underfull \hbox (badness 1990) in paragraph at lines 45257--45265 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45257--45265 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1014) in paragraph at lines 46694--46697 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [669] Underfull \hbox (badness 2401) in paragraph at lines 46827--46831 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [670] [671] Underfull \hbox (badness 3492) in paragraph at lines 46953--46955 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [672] Underfull \hbox (badness 2111) in paragraph at lines 47039--47044 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [673] [674] [675] [676] Underfull \hbox (badness 4001) in paragraph at lines 47287--47289 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 5417) in paragraph at lines 47688--47692 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [683] Underfull \hbox (badness 10000) in paragraph at lines 47749--47753 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [684]) (./compiler-pkg.tex Chapter 2. [685] [686] [687] [688]) (./datasets-pkg.tex Chapter 3. [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764]) (./grDevices-pkg.tex Chapter 4. [765] [766] [767] [768] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [769] [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [778] [779] [780] [781] [782] [783] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [784] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [785] [786] [787] [788] [789] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [796] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [797] [798] [799] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823] [824] [825] Underfull \vbox (badness 10000) has occurred while \output is active [826] [827] [828] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [829] [830] [831] [832] [833] [834] [835] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [842] [843] [844] [845] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [846] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [847] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [848] [849] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [850] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [851] [852] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [853] [854] [855] [856] [857] [858] [859] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [860] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [861] [862] [863] [864] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [865] [866] [867] [868] [869] [870] [871] [872] [873] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [874] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [875] [876] [877] [878] [879] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [880] [881] [882] [883] [884]) (./graphics-pkg.tex Chapter 5. [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Underfull \vbox (badness 10000) has occurred while \output is active [901] [902] [903] [904] [905] [906] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [922] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Underfull \vbox (badness 10000) has occurred while \output is active [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] Underfull \hbox (badness 3229) in paragraph at lines 4733--4738 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [957] [958] [959] [960] [961] Underfull \hbox (badness 1107) in paragraph at lines 5233--5239 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [962] Underfull \hbox (badness 10000) in paragraph at lines 5362--5365 [963] Underfull \hbox (badness 10000) in paragraph at lines 5423--5425 [964 ] [965 ] [966] [967] [968] [969] [970] [971] [972] [973] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6097 \aliasA{plot}{plot.default}{plot} [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6997--6998 [][] [988 ] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] Underfull \hbox (badness 4954) in paragraph at lines 9109--9111 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9111--9113 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1020] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9191 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9191 \HeaderA{units}{Graphical Units}{units} [1021] [1022] [1023] [1024]) (./grid-pkg.tex Chapter 6. [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1043] Underfull \vbox (badness 10000) has occurred while \output is active [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \vbox (badness 10000) has occurred while \output is active [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1106] [1107] [1108] [1109] [1110] [1111] [1112] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1113] [1114] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144]) (./methods-pkg.tex Chapter 7. [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] Underfull \vbox (badness 10000) has occurred while \output is active [1153] Underfull \vbox (badness 10000) has occurred while \output is active [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1171] [1172] [1173] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1174] [1175] [1176] [1177] [1178] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1179] [1180] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1181] [1182] [1183] [1184] [1185] [1186] [1187] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1188] [1189] [1190] [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1193] [1194] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1195] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] Underfull \vbox (badness 10000) has occurred while \output is active [1213] Underfull \vbox (badness 10000) has occurred while \output is active [1214] [1215] [1216] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1217] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1218] [1219] [1220] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1229] [1230] [1231] [1232] Underfull \vbox (badness 10000) has occurred while \output is active [1233] [1234] [1235] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1236] [1237] [1238] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1239] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1240] [1241] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1281] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1282] [1283] [1284] [1285]) (./parallel-pkg.tex [1286] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1287] [1288] [1289] [1290] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1307] [1308] [1309]) (./splines-pkg.tex [1310] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324]) (./stats-pkg.tex Chapter 10. [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1377] [1378] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1424] [1425] [1426] [1427] [1428] Underfull \vbox (badness 10000) has occurred while \output is active [1429] [1430] [1431] Underfull \vbox (badness 10000) has occurred while \output is active [1432] [1433] [1434] [1435] [1436] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] Underfull \vbox (badness 10000) has occurred while \output is active [1457] [1458] [1459] [1460] [1461] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1462] [1463] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1483] [1484] [1485] [1486] [1487] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1488] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1502] [1503] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1513] [1514] [1515] [1516] [1517] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1518] [1519] [1520] [1521] [1522] [1523] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1524] [1525] [1526] [1527] [1528] [1529] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1540] [1541] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1558] [1559] [1560] [1561] [1562] [1563] [1564] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1590] [1591] Underfull \vbox (badness 10000) has occurred while \output is active [1592] Underfull \vbox (badness 10000) has occurred while \output is active [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1606] [1607] [1608] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Underfull \vbox (badness 10000) has occurred while \output is active [1609] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1610] [1611] [1612] [1613] [1614] [1615] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1631] [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1685] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1710] [1711] [1712] [1713] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1714] [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] Underfull \vbox (badness 10000) has occurred while \output is active [1737] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1738] [1739] [1740] [1741] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1742] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1744] [1745] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1746] [1747] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1748] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1749] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1750] [1751] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1769] [1770] [1771] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1772] [1773] [1774] [1775] [1776] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1777] [1778] [1779] Underfull \hbox (badness 1127) in paragraph at lines 30293--30296 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate only for [1780] [1781] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1801] [1802] [1803] [1804] [1805] [1806] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1815] [1816] [1817] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1818] [1819] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1820] [1821] [1822] [1823] [1824]) (./stats4-pkg.tex Chapter 11. [1825] [1826] [1827] Underfull \vbox (badness 10000) has occurred while \output is active [1828] [1829] [1830] [1831] [1832] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1833] [1834] [1835]) (./tcltk-pkg.tex [1836] Chapter 12. [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \vbox (badness 10000) has occurred while \output is active [1844] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856]) (./tools-pkg.tex Chapter 13. [1857] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1858] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1859] [1860] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [1861] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [1862] [1863] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1875] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [1876] [1877] [1878] [1879] [1880] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [1881] [1882] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [1883] [1884] [1885] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [1893] [1894] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1919] [1920] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [1927] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1928] [1929] [1930] [1931] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [1932] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1933] [1934] [1935]) (./utils-pkg.tex [1936] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [1948] [1949] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [1950] [1951] [1952] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1953] [1954] [1955] Underfull \vbox (badness 10000) has occurred while \output is active [1956] [1957] [1958] [1959] [1960] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [1971] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [1972] [1973] [1974] [1975] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \hbox (badness 6842) in paragraph at lines 4048--4053 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [1995] Underfull \hbox (badness 1430) in paragraph at lines 4111--4115 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [1996] Underfull \hbox (badness 1184) in paragraph at lines 4182--4198 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4182--4198 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4182--4198 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [1997] [1998] Underfull \hbox (badness 10000) in paragraph at lines 4332--4334 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5111 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5111 ...mat Unordered and Ordered Lists}{format} [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] Underfull \hbox (badness 1622) in paragraph at lines 5634--5638 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2019] [2020] [2021] [2022] [2023] Underfull \hbox (badness 1448) in paragraph at lines 6019--6024 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] Underfull \hbox (badness 1371) in paragraph at lines 6567--6569 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2032] Underfull \hbox (badness 1502) in paragraph at lines 6656--6662 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6656--6662 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2033] [2034] [2035] Underfull \hbox (badness 10000) in paragraph at lines 6833--6842 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6833--6842 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2036] Underfull \hbox (badness 2150) in paragraph at lines 6895--6898 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2037] [2038] Underfull \hbox (badness 3118) in paragraph at lines 7034--7036 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2039] [2040] Underfull \hbox (badness 1325) in paragraph at lines 7213--7217 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2041] Underfull \hbox (badness 1424) in paragraph at lines 7305--7308 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2042] Underfull \hbox (badness 3219) in paragraph at lines 7377--7384 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7377--7384 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7377--7384 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7377--7384 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7385--7388 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2043] Underfull \hbox (badness 1024) in paragraph at lines 7514--7517 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2044] Underfull \hbox (badness 10000) in paragraph at lines 7547--7552 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2045] Underfull \hbox (badness 5133) in paragraph at lines 7606--7610 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 10000) in paragraph at lines 8270--8272 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] Underfull \hbox (badness 2310) in paragraph at lines 9057--9062 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 1248) in paragraph at lines 9628--9632 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2076] Underfull \hbox (badness 1789) in paragraph at lines 9706--9708 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2077] [2078] [2079] [2080] Underfull \hbox (badness 2600) in paragraph at lines 9930--9933 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] Underfull \hbox (badness 1097) in paragraph at lines 10567--10570 []\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2089] [2090] Underfull \hbox (badness 3000) in paragraph at lines 10703--10708 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 read.table[][][][]\T1/ptm/m/n/10 ; [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] Underfull \hbox (badness 2134) in paragraph at lines 11298--11303 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 write.table[][][][]\T1/ptm/m/n/10 ; [2099] Underfull \hbox (badness 10000) in paragraph at lines 11354--11359 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11354--11359 []\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 1824) in paragraph at lines 11852--11856 \T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed [2108] [2109] [2110] [2111] [2112] [2113] Underfull \hbox (badness 4060) in paragraph at lines 12300--12303 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12323--12323 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2114] [2115] [2116] [2117] Underfull \hbox (badness 2150) in paragraph at lines 12578--12580 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2118] [2119] [2120] Underfull \hbox (badness 10000) in paragraph at lines 12798--12802 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able [2121] Underfull \hbox (badness 10000) in paragraph at lines 12831--12837 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2762) in paragraph at lines 12846--12852 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2122] [2123] Underfull \hbox (badness 1009) in paragraph at lines 13021--13033 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2124] Underfull \hbox (badness 4779) in paragraph at lines 13061--13063 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and Underfull \hbox (badness 1077) in paragraph at lines 13091--13098 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2125] [2126] [2127] [2128] [2129] [2130] Underfull \hbox (badness 3780) in paragraph at lines 13516--13522 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13534--13537 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2131] [2132] [2133] [2134] Underfull \hbox (badness 2302) in paragraph at lines 13744--13746 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2135] [2136] [2137] [2138] Underfull \hbox (badness 4441) in paragraph at lines 14043--14048 []\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/ m/sl/10 ) []\T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 14052--14055 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2139] [2140] [2141] [2142] [2143] [2144] [2145] Underfull \hbox (badness 2932) in paragraph at lines 14483--14490 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14483--14490 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. Ob- [2146] [2147] Underfull \hbox (badness 1460) in paragraph at lines 14647--14656 \T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools []\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n /10 which used Underfull \hbox (badness 1019) in paragraph at lines 14665--14677 []\T1/ptm/m/n/10 For GNU []\T1/zi4/m/sl/10 tar[]\T1/ptm/m/n/10 , `[]\T1/zi4/m/s l/10 --format=ustar[]\T1/ptm/m/n/10 ' forces a more portable for-mat. (The de-f ault is set at Underfull \hbox (badness 1527) in paragraph at lines 14665--14677 \T1/ptm/m/n/10 com-pi-la-tion and will be shown at the end of the out-put from []\T1/zi4/m/sl/10 tar --help[]\T1/ptm/m/n/10 : for ver-sion [2148] [2149] Underfull \hbox (badness 6510) in paragraph at lines 14797--14801 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men t vari-able Underfull \hbox (badness 10000) in paragraph at lines 14804--14807 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14804--14807 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] Underfull \hbox (badness 10000) in paragraph at lines 15477--15482 []\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15477--15482 [][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [ ]\T1/ptm/m/n/10 and Underfull \hbox (badness 1052) in paragraph at lines 15483--15485 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2159] Underfull \hbox (badness 10000) in paragraph at lines 15542--15545 [][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download .packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][ ][]\T1/ptm/m/n/10 , [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174]) [2175] [2176] (./KernSmooth-pkg.tex Chapter 15. [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186]) (./MASS-pkg.tex Chapter 16. [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.g lm}) has been already used, duplicate ignored \relax l.1479 ...{confint.glm}{confint-MASS}{confint.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.n ls}) has been already used, duplicate ignored \relax l.1480 ...{confint.nls}{confint-MASS}{confint.nls} [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] Underfull \hbox (badness 10000) in paragraph at lines 2789--2794 []\T1/zi4/m/sl/10 "geometric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "log-normal"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "lognormal"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "negative [2226] [2227] Underfull \hbox (badness 4686) in paragraph at lines 2961--2963 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] Underfull \hbox (badness 1117) in paragraph at lines 4740--4743 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2253] Underfull \hbox (badness 1117) in paragraph at lines 4819--4822 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6086 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk.1}) h as been already used, duplicate ignored \relax l.6086 ...sical N, P, K Factorial Experiment}{npk} [2271] [2272] [2273] [2274] [2275] [2276] [2277] [2278] [2279] [2280] [2281] [2282] Underfull \hbox (badness 1117) in paragraph at lines 6987--6994 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2283] Underfull \hbox (badness 3138) in paragraph at lines 7058--7064 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2284] [2285] [2286] Underfull \hbox (badness 1910) in paragraph at lines 7237--7240 []\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than []\T1/zi4/m/sl/10 min(p, [2287] [2288] [2289] [2290] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm}) has been already used, duplicate ignored \relax l.7514 ... for Profiling glm Objects}{profile.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm.1}) has been already used, duplicate ignored \relax l.7514 ... for Profiling glm Objects}{profile.glm} [2291] [2292] [2293] [2294] Underfull \hbox (badness 4686) in paragraph at lines 7809--7811 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2295] [2296] [2297] [2298] [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] [2331]) (./Matrix-pkg.tex [2332] Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 35--38 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 35--38 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2333] Underfull \hbox (badness 1769) in paragraph at lines 89--92 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal }) has been already used, duplicate ignored \relax l.182 ...{all.equal}{all.equal-methods}{all.equal} [2335] Underfull \hbox (badness 3098) in paragraph at lines 264--266 []\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic func-tion [2336] [2337] [2338] Underfull \hbox (badness 5119) in paragraph at lines 492--496 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2339] [2340] Underfull \hbox (badness 2035) in paragraph at lines 590--593 []\T1/ptm/m/n/10 The value of []\T1/zi4/m/sl/10 bdiag() []\T1/ptm/m/n/10 in-her -its from class [][][]\T1/zi4/m/sl/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , whe reas []\T1/zi4/m/sl/10 .bdiag() []\T1/ptm/m/n/10 re-turns a [2341] [2342] [2343] Underfull \hbox (badness 5817) in paragraph at lines 913--916 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 BunchKaufmanFactorization[][][][]\ T1/ptm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][ ][]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 6758) in paragraph at lines 919--924 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("BunchKaufman", ...) Underfull \hbox (badness 2961) in paragraph at lines 919--924 []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more typ-i-cally ob-tained as the value of [2344] [2345] Underfull \hbox (badness 10000) in paragraph at lines 1081--1086 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class [2346] [2347] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2}) has been already used, duplicate ignored \relax l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2}) has been already used, duplicate ignored \relax l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods} [2348] Underfull \hbox (badness 10000) in paragraph at lines 1322--1329 []\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/zi4/m/sl/10 CHMfactor [] \T1/ptm/m/n/10 is based on CHOLMOD's C-level [2349] [2350] [2351] [2352] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha s been already used, duplicate ignored \relax l.1625 \aliasA{chol}{chol-methods}{chol} Underfull \hbox (badness 6220) in paragraph at lines 1656--1658 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2353] Underfull \hbox (badness 2334) in paragraph at lines 1730--1734 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 1730--1734 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2354] Underfull \vbox (badness 10000) has occurred while \output is active [2355] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol2inv} ) has been already used, duplicate ignored \relax l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv} [2356] [2357] Underfull \hbox (badness 10000) in paragraph at lines 2005--2008 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 CholeskyFactorization[][][][]\T1/p tm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\ T1/ptm/m/n/10 , by class Underfull \hbox (badness 7722) in paragraph at lines 2011--2019 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 1990) in paragraph at lines 2051--2060 []\T1/ptm/m/n/10 In \T1/ptm/b/n/10 Ma-trix []\T1/zi4/m/sl/10 < 1.6-0[]\T1/ptm/m /n/10 , class []\T1/zi4/m/sl/10 Cholesky []\T1/ptm/m/n/10 ex-tended [][][]\T1/z i4/m/sl/10 dtrMatrix[][][] []\T1/ptm/m/n/10 and class []\T1/zi4/m/sl/10 pCholes ky []\T1/ptm/m/n/10 ex-tended Underfull \hbox (badness 2334) in paragraph at lines 2066--2070 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2066--2070 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2358] [2359] Underfull \hbox (badness 6220) in paragraph at lines 2185--2187 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2360] [2361] Underfull \hbox (badness 2334) in paragraph at lines 2315--2319 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2315--2319 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2362] Underfull \vbox (badness 10000) has occurred while \output is active [2363] Underfull \vbox (badness 10000) has occurred while \output is active [2364] [2365] [2366] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colMeans} ) has been already used, duplicate ignored \relax l.2696 ...asA{colMeans}{colSums-methods}{colMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colSums}) has been already used, duplicate ignored \relax l.2704 \aliasA{colSums}{colSums-methods}{colSums} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowMeans} ) has been already used, duplicate ignored \relax l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowSums}) has been already used, duplicate ignored \relax l.2719 \aliasA{rowSums}{colSums-methods}{rowSums} [2367] [2368] [2369] Underfull \hbox (badness 3547) in paragraph at lines 2888--2891 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2370] [2371] [2372] [2373] [2374] [2375] Underfull \hbox (badness 1983) in paragraph at lines 3390--3398 []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unpackedMatrix[][][][]\T1/ptm/m/n/10 . Al-ter-na-tively into the (cur-rently) three sub-classes [][][]\T1/zi4/m/sl/ 10 ddenseMatrix[][][][]\T1/ptm/m/n/10 , [2376] [2377] [2378] [2379] Underfull \hbox (badness 2717) in paragraph at lines 3712--3716 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2380] Underfull \hbox (badness 3417) in paragraph at lines 3828--3830 []\T1/zi4/m/sl/10 .sparseDiagonal() []\T1/ptm/m/n/10 ex-ists pri-mar-ily to lev er-age ef-fi-cient C-level meth-ods avail-able for [2381] [2382] Underfull \hbox (badness 8019) in paragraph at lines 3933--3935 []\T1/zi4/m/sl/10 signature(x = "nMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cally eq uiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [][][]\T1/zi4/m/sl/1 0 which[][][](x, Underfull \hbox (badness 10000) in paragraph at lines 3936--3940 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these g roup meth-ods re-turn a [2383] [2384] [2385] [2386] Underfull \hbox (badness 1902) in paragraph at lines 4263--4265 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) []\T1/ptm/m/n/10 is some-times prefer-able to (and more ef-fi-cient than) []\T1/zi4/m/sl/10 zapsmall(x, Underfull \hbox (badness 2020) in paragraph at lines 4300--4303 []\T1/ptm/m/n/10 a typ-i-cally sparse ma-trix; in-ter-nally co-erced to ei-ther []\T1/zi4/m/sl/10 "[][]dgCMatrix[][][]" []\T1/ptm/m/n/10 or [2387] [2388] [2389] Underfull \hbox (badness 4378) in paragraph at lines 4503--4512 []\T1/ptm/m/n/10 or [][][]\T1/zi4/m/sl/10 chol[][][]() []\T1/ptm/m/n/10 is typ- i-cally used, e.g., see []\T1/zi4/m/sl/10 selectMethod("coerce", c(from="dsyMat rix", [2390] [2391] [2392] [2393] Underfull \hbox (badness 10000) in paragraph at lines 4834--4837 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , by class [ ]\T1/zi4/m/sl/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/zi4/m/sl/10 "spa rseMatrix"[]\T1/ptm/m/n/10 , by classes [2394] Underfull \hbox (badness 4518) in paragraph at lines 4929--4932 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = Underfull \hbox (badness 3690) in paragraph at lines 4932--4935 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = [2395] [2396] Underfull \hbox (badness 2318) in paragraph at lines 5035--5039 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dgCMatrix"[]\T1/ptm/m/n/10 , di-rectl y. Class []\T1/zi4/m/sl/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Clas s []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , [2397] Underfull \hbox (badness 3240) in paragraph at lines 5151--5155 []\T1/zi4/m/sl/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/ n/10 : the [][][]\T1/zi4/m/sl/10 determinant[][][](x) [2398] [2399] [2400] [2401] Underfull \hbox (badness 10000) in paragraph at lines 5399--5401 []\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir -tual class [2402] Underfull \hbox (badness 10000) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/s l/10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L)[]\T 1/ptm/m/n/10 . Underfull \hbox (badness 1776) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1"]] []\T1/ptm/m/n/10 rep-re-sent the same per-mu-ta-tion ma-trix Underfull \hbox (badness 10000) in paragraph at lines 5529--5544 []\T1/zi4/m/sl/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl /10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L, U, Q )[]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl/ 10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(L, U, P)[]\ T1/ptm/m/n/10 . Underfull \hbox (badness 1142) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1."]] []\T1/ptm/m/n/10 are iden-ti-cal mod-ulo []\T1/zi4/m/sl/10 Dimna mes[]\T1/ptm/m/n/10 . The [2403] [2404] [2405] [2406] [2407] [2408] Underfull \hbox (badness 1087) in paragraph at lines 5987--5993 []\T1/ptm/m/n/10 a string whose first three char-ac-ters spec-ify the class of the re-sult. It Underfull \hbox (badness 10000) in paragraph at lines 6000--6002 []\T1/ptm/m/n/10 a string in []\T1/zi4/m/sl/10 c("trace", "sumLog", "prod", "mi n", "max", "range", [2409] [2410] [2411] [2412] Underfull \hbox (badness 1931) in paragraph at lines 6262--6264 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the []\T1/zi4/m/sl/10 zero.print [] \T1/ptm/m/n/10 codes should be aligned, see [2413] [2414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.image}) h as been already used, duplicate ignored \relax l.6399 \aliasA{image}{image-methods}{image} [2415] Underfull \hbox (badness 1005) in paragraph at lines 6476--6481 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. []\T1/zi4/m/sl/10 N A []\T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1189) in paragraph at lines 6476--6481 \T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 as by de-fault, []\ T1/zi4/m/sl/10 border.col <- if(lwd < .01) NA else NULL []\T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 6495--6498 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ][]\T1/zi4/m/sl/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use [2416] Overfull \hbox (42.75635pt too wide) in paragraph at lines 6545--6545 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2417] [2418] [2419] [2420] Underfull \hbox (badness 1509) in paragraph at lines 6810--6812 []\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be a per-mu-ta-tion of [2421] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h as been already used, duplicate ignored \relax l.6888 \aliasA{anyNA}{is.na-methods}{anyNA} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.finite }) has been already used, duplicate ignored \relax l.6895 ...asA{is.finite}{is.na-methods}{is.finite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.infini te}) has been already used, duplicate ignored \relax l.6903 ...is.infinite}{is.na-methods}{is.infinite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.na}) h as been already used, duplicate ignored \relax l.6911 \aliasA{is.na}{is.na-methods}{is.na} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.nan}) has been already used, duplicate ignored \relax l.6918 \aliasA{is.nan}{is.na-methods}{is.nan} [2422] [2423] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.isSymmetr ic}) has been already used, duplicate ignored \relax l.7077 ...etric}{isSymmetric-methods}{isSymmetric} [2424] Overfull \hbox (26.39984pt too wide) in paragraph at lines 7124--7124 []\T1/zi4/m/sl/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$dou ble.eps, tol1 = 8 * tol, ...)[] [2425] [2426] [2427] Underfull \vbox (badness 10000) has occurred while \output is active [2428] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kronecker }) has been already used, duplicate ignored \relax l.7453 ...kronecker}{kronecker-methods}{kronecker} [2429] [2430] [2431 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,ndiMatr ix,Matrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.7725 \item[\code{Dim},\code{Dimnames}:] The dimension (a length-2] Underfull \hbox (badness 2478) in paragraph at lines 7736--7741 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7744--7747 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 7968--7971 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2435] Underfull \hbox (badness 10000) in paragraph at lines 8029--8032 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2436] [2437] [2438] [2439] pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rpcent.* .Rpcent.}) has been already used, duplicate ignored \relax l.8310 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod }) has been already used, duplicate ignored \relax l.8384 ...A{crossprod}{matmult-methods}{crossprod} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrosspro d}) has been already used, duplicate ignored \relax l.8460 ...tcrossprod}{matmult-methods}{tcrossprod} [2440] Underfull \hbox (badness 10000) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na-tures (use Underfull \hbox (badness 5359) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-t rix mul-ti-pli-ca-tion. Mul-ti-pli-ca-tion Underfull \hbox (badness 10000) in paragraph at lines 8627--8629 []\T1/zi4/m/sl/10 signature(x = "CsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 8629--8631 []\T1/zi4/m/sl/10 signature(x = "TsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an [2441] [2442] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has been already used, duplicate ignored \relax l.8856 \aliasA{det}{Matrix-class}{det} [2443] Underfull \hbox (badness 1527) in paragraph at lines 8933--8935 []\T1/zi4/m/sl/10 signature(x = "Matrix")[]\T1/ptm/m/n/10 : sim-ply de-fined as []\T1/zi4/m/sl/10 prod(dim(x)) []\T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 8941--8944 []\T1/zi4/m/sl/10 signature(object = "Matrix")[]\T1/ptm/m/n/10 : draws an [][][ ]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 8946--8949 [2444] [2445] [2446] Underfull \hbox (badness 10000) in paragraph at lines 9148--9150 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", logarithm = "missing")[] \T1/ptm/m/n/10 : sets Underfull \hbox (badness 10000) in paragraph at lines 9154--9156 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "NULL")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with Underfull \hbox (badness 10000) in paragraph at lines 9156--9158 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "list")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with [2447] Underfull \hbox (badness 10000) in paragraph at lines 9193--9196 []\T1/ptm/m/n/10 Generic func-tions [][][]\T1/zi4/m/sl/10 expand1[][][] []\T1/p tm/m/n/10 and [][][]\T1/zi4/m/sl/10 expand2[][][] []\T1/ptm/m/n/10 for con-stru ct-ing ma-trix fac-tors from [2448] Underfull \hbox (badness 10000) in paragraph at lines 9311--9313 []\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/zi4/m/sl/10 X <- (X + t(X))/2 [ ]\T1/ptm/m/n/10 should be done, af-ter []\T1/zi4/m/sl/10 X <- [2449] [2450] Underfull \vbox (badness 10000) has occurred while \output is active [2451] Underfull \hbox (badness 2478) in paragraph at lines 9507--9512 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 9515--9518 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2452] [2453] Underfull \hbox (badness 5924) in paragraph at lines 9696--9698 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2454] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) ha s been already used, duplicate ignored \relax l.9738 \aliasA{norm}{norm-methods}{norm} [2455] [2456] [2457] Underfull \hbox (badness 10000) in paragraph at lines 10031--10034 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2458] Underfull \hbox (badness 10000) in paragraph at lines 10095--10098 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2459] [2460] [2461] Underfull \hbox (badness 4242) in paragraph at lines 10295--10298 [][][]\T1/zi4/m/sl/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unp ack[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/zi4/m/sl/10 "[][] unpackedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes [2462] Underfull \hbox (badness 3547) in paragraph at lines 10383--10386 []\T1/zi4/m/sl/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and o th-ers listed by []\T1/zi4/m/sl/10 showMethods("%*%", [2463] [2464] [2465] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.10601 \aliasA{qr}{qr-methods}{qr} [2466] [2467] [2468] [2469] Underfull \hbox (badness 7186) in paragraph at lines 10845--10851 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/zi4/m/sl/10 qr[][][](x, tol, [2470] [2471] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h as been already used, duplicate ignored \relax l.11002 \aliasA{rcond}{rcond-methods}{rcond} [2472] [2473] [2474] [2475] Underfull \hbox (badness 2351) in paragraph at lines 11284--11292 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1509) in paragraph at lines 11284--11292 \T1/ptm/m/n/10 in-dices, if not []\T1/zi4/m/sl/10 symmetric [][]sample.int[][][ ](nrow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/zi4/m/sl/10 rand.x []\T1/pt m/m/n/10 is not []\T1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 --- [2476] [2477] Underfull \hbox (badness 10000) in paragraph at lines 11441--11444 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 SchurFactorization[][][][]\T1/ptm/ m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\T1/ ptm/m/n/10 , by class [2478] [2479] [2480] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h as been already used, duplicate ignored \relax l.11630 \aliasA{solve}{solve-methods}{solve} [2481] Underfull \hbox (badness 5316) in paragraph at lines 11816--11821 []\T1/ptm/m/n/10 Methods for dense []\T1/zi4/m/sl/10 a []\T1/ptm/m/n/10 are bui lt on 14 LA-PACK rou-tines: class []\T1/zi4/m/sl/10 d..Matrix[]\T1/ptm/m/n/10 , where [2482] Underfull \hbox (badness 10000) in paragraph at lines 11916--11919 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2483] Underfull \hbox (badness 10000) in paragraph at lines 11952--11955 []\T1/ptm/m/n/10 character string or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or (co-er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 11963--11967 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] Underfull \hbox (badness 10000) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 (object = "sparseMatrix", uniqT=FALSE)[]\T1/ptm/m/n/10 : Re-t urns an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 "sparseSummary" []\T1/ptm/m/n/10 which is ba-si-cally a [][][ ]\T1/zi4/m/sl/10 data.frame[][][] []\T1/ptm/m/n/10 with columns []\T1/zi4/m/sl/ 10 (i,j,x) []\T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 signature(from = "factor", to = "sparseMatrix")[]\T1/ptm/m/n/ 10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 "sparseMatrix" []\T1/ptm/m/n/10 pro-duces the ma-trix of in-d i-ca-tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2492] [2493] [2494] [2495] [2496] Underfull \hbox (badness 5036) in paragraph at lines 12918--12920 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2497] Underfull \hbox (badness 2828) in paragraph at lines 13084--13087 []\T1/zi4/m/sl/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m /n/10 co-erces sparse vec-tors to Underfull \hbox (badness 2486) in paragraph at lines 13106--13109 []\T1/zi4/m/sl/10 signature(x = "sparseVector") []\T1/ptm/m/n/10 re-peat []\T1/ zi4/m/sl/10 x[]\T1/ptm/m/n/10 , with the same ar-gu-ment list []\T1/zi4/m/sl/10 (x, times, [2498] [2499] [2500] [2501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<.Rdash. }) has been already used, duplicate ignored \relax l.13311 ...\Rdash{}}{subassign-methods}{[<.Rdash.} Underfull \hbox (badness 6910) in paragraph at lines 13398--13400 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2502] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has b een already used, duplicate ignored \relax l.13445 \aliasA{[}{subscript-methods}{[} [2503] [2504] Underfull \hbox (badness 2057) in paragraph at lines 13656--13658 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., Underfull \hbox (badness 10000) in paragraph at lines 13670--13675 []\T1/zi4/m/sl/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-tri x, in-her-it-ing from [][][]\T1/zi4/m/sl/10 generalMatrix[][][][]\T1/ptm/m/n/10 , [2505] [2506] Underfull \hbox (badness 10000) in paragraph at lines 13826--13831 []\T1/ptm/m/n/10 Note that all []\T1/zi4/m/sl/10 new(.)[]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 spMatrix[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 spar seMatrix[][][](*, repr="T") []\T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 13832--13838 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as []\ T1/zi4/m/sl/10 %*% []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 crossprod []\T1/ptm/m /n/10 are de-fined [2507] [2508] [2509] Overfull \hbox (21.75807pt too wide) in paragraph at lines 14021--14027 []\T1/ptm/m/n/10 GAL lat-tice file `\T1/zi4/m/sl/10 usc_q.GAL\T1/ptm/m/n/10 ' ( re-trieved in 2008 from `\T1/zi4/m/sl/10 http://sal.uiuc.edu/weights/zips/usc.z ip\T1/ptm/m/n/10 ' [2510] [2511] [2512]) (./boot-pkg.tex Chapter 18. [2513] [2514] [2515] [2516] [2517] [2518] [2519] [2520] [2521] [2522] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2523] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2524] Underfull \vbox (badness 10000) has occurred while \output is active [2525] [2526] [2527] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2528] [2529] [2530] [2531] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2532] [2533] [2534] [2535] [2536] [2537] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are []\T1/zi4/m/sl/10 "ordinary" []\T1/ptm/m/n/10 (case re-sam-pling), [2538] [2539] Underfull \vbox (badness 10000) has occurred while \output is active [2540] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2541] [2542] [2543] [2544] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2545] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2546] [2547] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/zi4/m /sl/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 n []\T1/ptm/m/n /10 is the sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if []\T1/zi4/m/sl/10 unbiased []\T1/ptm/m/n/10 is []\T1/zi 4/m/sl/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/zi4/m/sl/10 1/n [ ]\T1/ptm/m/n/10 is used. This is mul-ti-plied by [2548] [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] [2558] [2559] [2560] [2561] [2562] [2563] [2564] [2565] [2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2582] [2583] [2584] [2585] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2586] [2587] [2588] [2589] [2590] [2591] [2592] [2593] [2594] [2595] [2596] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/zi4/m/sl/10 " saddle.distn"[]\T1/ptm/m/n/10 . See the help file for [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2606] [2607] [2608] [2609] [2610] [2611] [2612] [2613] [2614] [2615]) (./class-pkg.tex [2616] Chapter 19. [2617] [2618] [2619] [2620] [2621] [2622] [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] [2632]) (./cluster-pkg.tex Chapter 20. [2633] [2634] [2635] [2636] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] Underfull \hbox (badness 1412) in paragraph at lines 782--787 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][][]\T1/zi4/m/sl/10 agnes[][][][] \T1/ptm/m/n/10 ), orig-i-nally. Met-ric []\T1/zi4/m/sl/10 "jaccard"[]\T1/ptm/m/ n/10 : Kamil Ko-zlowski [2645] Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2646] [2647] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2648] [2649] [2650] [2651] [2652] [2653] Underfull \hbox (badness 10000) in paragraph at lines 1474--1477 [2654] [2655] Underfull \hbox (badness 2503) in paragraph at lines 1583--1586 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/1 0 or []\T1/zi4/m/sl/10 "twins"[]\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2656] Underfull \hbox (badness 4954) in paragraph at lines 1680--1682 []\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/zi4/m/s l/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2657] Underfull \hbox (badness 7667) in paragraph at lines 1694--1698 []\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault \T1/ptm/m/n/10 for all nu-meric Underfull \hbox (badness 10000) in paragraph at lines 1694--1698 \T1/ptm/m/n/10 (incl []\T1/zi4/m/sl/10 integer[]\T1/ptm/m/n/10 ) columns of []\ T1/zi4/m/sl/10 x[]\T1/ptm/m/n/10 , aka []\T1/zi4/m/sl/10 "I" []\T1/ptm/m/n/10 i n re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2658] [2659] Overfull \hbox (5.24408pt too wide) in paragraph at lines 1866--1866 []\T1/zi4/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated * A*symmetric binary (w/ warning)[] Overfull \hbox (11.23795pt too wide) in paragraph at lines 1877--1877 []\T1/zi4/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id entical to treating them as "N" :[] [2660] [2661] [2662] [2663] [2664] Underfull \hbox (badness 10000) in paragraph at lines 2212--2215 Underfull \hbox (badness 10000) in paragraph at lines 2223--2229 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also th e [][][]\T1/zi4/m/sl/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/zi4/m/s l/10 ellipsoid []\T1/ptm/m/n/10 ob-jects. [2665] [2666] [2667] [2668] Underfull \hbox (badness 6675) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676] Underfull \hbox (badness 2980) in paragraph at lines 3059--3063 [][][]\T1/zi4/m/sl/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-e nces; [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 daisy[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [2677] [2678] [2679] [2680] [2681] [2682] Underfull \hbox (badness 1142) in paragraph at lines 3398--3401 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2683] Underfull \hbox (badness 1142) in paragraph at lines 3517--3520 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2684] [2685] [2686] [2687] Underfull \hbox (badness 2582) in paragraph at lines 3740--3745 [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 clusplot .default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pam[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 clara[][][][]\T1/ptm/m/n/10 , [2688] Underfull \hbox (badness 2698) in paragraph at lines 3802--3807 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls []\T1/ zi4/m/sl/10 plot([][]as.hclust[][][](x), ...)[]\T1/ptm/m/n/10 , which Underfull \hbox (badness 4792) in paragraph at lines 3802--3807 \T1/ptm/m/n/10 dis-patches to [][][]\T1/zi4/m/sl/10 plot.hclust[][][](..)[]\T1/ ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/zi4/m/sl/10 x x <- [2689] Underfull \hbox (badness 10000) in paragraph at lines 3875--3877 []\T1/ptm/m/n/10 Available as `\T1/zi4/m/sl/10 pluton.dat\T1/ptm/m/n/10 ' from the archive of the Uni-ver-sity of Antwer-pen, [2690] [2691] [2692] Underfull \hbox (badness 10000) in paragraph at lines 4089--4091 []\T1/ptm/m/n/10 a []\T1/zi4/m/sl/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a []\T1/zi4/m/sl/10 summary.dissimilarity []\T1/ptm/m/n/10 one for [2693] [2694] [2695] [2696] Underfull \hbox (badness 2626) in paragraph at lines 4318--4323 []\T1/ptm/m/n/10 arguments passed [][][]\T1/zi4/m/sl/10 barplot[][][]()[]\T1/pt m/m/n/10 ; note that the de-fault used to be []\T1/zi4/m/sl/10 col = [2697] Underfull \hbox (badness 1383) in paragraph at lines 4395--4400 []\T1/ptm/m/n/10 While []\T1/zi4/m/sl/10 silhouette() []\T1/ptm/m/n/10 is \T1/p tm/m/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][][]\T1/zi4/m/sl/10 partition[][ ][] []\T1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2698] [2699] [2700] [2701] [2702] [2703] [2704] [2705] Underfull \hbox (badness 10000) in paragraph at lines 4836--4838 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2706] [2707]) (./codetools-pkg.tex [2708] Chapter 21. [2709] [2710] [2711] [2712] [2713]) (./foreign-pkg.tex [2714] Chapter 22. Underfull \hbox (badness 10000) in paragraph at lines 33--37 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2715] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2716] [2717] [2718] [2719] [2720] [2721] [2722] Underfull \hbox (badness 2846) in paragraph at lines 502--511 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer-ent lev- Underfull \hbox (badness 5417) in paragraph at lines 502--511 \T1/ptm/m/n/10 els. For []\T1/zi4/m/sl/10 "append" []\T1/ptm/m/n/10 (the de-fau lt), the first orig-i-nal value la-bel is Underfull \hbox (badness 6001) in paragraph at lines 502--511 \T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/z i4/m/sl/10 paste0(label, [2723] Overfull \hbox (6.73795pt too wide) in paragraph at lines 620--620 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2724] [2725] [2726] Underfull \hbox (badness 10000) in paragraph at lines 808--809 [2727] Underfull \hbox (badness 10000) in paragraph at lines 865--869 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2728] [2729] Underfull \hbox (badness 10000) in paragraph at lines 986--988 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2730] [2731] [2732] [2733] Underfull \hbox (badness 10000) in paragraph at lines 1265--1271 []\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/zi4/m/sl/10 forei gn:::writeForeignStata[]\T1/ptm/m/n/10 , [2734] [2735]) (./lattice-pkg.tex [2736] Chapter 23. [2737] Underfull \hbox (badness 1484) in paragraph at lines 114--118 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/zi4/m/sl/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2738] [2739] [2740] Underfull \vbox (badness 10000) has occurred while \output is active [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] [2749] [2750] [2751] [2752] [2753] Underfull \hbox (badness 1062) in paragraph at lines 1395--1399 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2754] Underfull \vbox (badness 4805) has occurred while \output is active [2755] Underfull \hbox (badness 1803) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 Lattice[][][] []\T1/ptm/m/n/10 for an overview of the pac k-age, as well as [][][]\T1/zi4/m/sl/10 barchart.table[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.trellis[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 panel.superpose[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.loess[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.average[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/zi4/m/sl/10 strip.default[][][][]\T1/ptm/m/n/10 , [2756] [2757] Underfull \hbox (badness 3009) in paragraph at lines 1705--1707 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/zi4/m/sl/10 xyplot[ ][][][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2758] [2759] [2760] [2761] [2762] [2763] Underfull \hbox (badness 10000) in paragraph at lines 2137--2140 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fi ed, the value of [2764] [2765] [2766] [2767] [2768] [2769] [2770] [2771] Underfull \vbox (badness 10000) has occurred while \output is active [2772] [2773] Underfull \hbox (badness 2781) in paragraph at lines 2871--2873 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the []\T1/zi4/m/sl/10 co l.regions []\T1/ptm/m/n/10 ar-gu-ment in [2774] Underfull \hbox (badness 2486) in paragraph at lines 3021--3025 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2775] [2776] [2777] [2778] [2779] [2780] [2781] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel} ) has been already used, duplicate ignored \relax l.3506 \aliasA{parallel}{B\_08\_splom}{parallel} [2782] [2783] Underfull \hbox (badness 2368) in paragraph at lines 3644--3644 []\T1/zi4/m/sl/10 auto.key[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 prepanel[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 scales[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 strip[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 groups[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 x lab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/1 0 ylab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[]\T1/ptm/m/n/10 , [2784] [2785] [2786] [2787] [2788] Underfull \hbox (badness 5696) in paragraph at lines 3992--3996 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 by spec-i-fy-ing []\T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")[]\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2789] [2790] [2791] Underfull \hbox (badness 1389) in paragraph at lines 4175--4183 \T1/ptm/m/n/10 based on HCL palettes, but cus-tomiza-tion of the palettes is al -lowed. Ear-lier be-haviour [2792] Underfull \hbox (badness 1173) in paragraph at lines 4251--4255 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4278--4280 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2793] [2794] [2795] Underfull \hbox (badness 3492) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/zi4/m/sl/10 col []\T1/ptm/m/n /10 is used for com-po-nents []\T1/zi4/m/sl/10 "plot.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4503--4506 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 p lot.symbol[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 plot.polygon[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 and [2796] [2797] [2798] [2799] [2800] [2801] [2802] Underfull \vbox (badness 10000) has occurred while \output is active [2803] [2804] [2805] Underfull \hbox (badness 6157) in paragraph at lines 5232--5235 []\T1/zi4/m/sl/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gl es via rect-an-gles. []\T1/zi4/m/sl/10 print.shingle []\T1/ptm/m/n/10 and [2806] [2807] [2808] [2809] [2810] [2811] [2812] Underfull \hbox (badness 10000) in paragraph at lines 5684--5687 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5684--5687 []\T1/zi4/m/sl/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on th e left of pan-els us-ing [2813] [2814] [2815] [2816] [2817] Underfull \hbox (badness 4805) in paragraph at lines 6045--6049 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 For []\T1/zi4/m/sl/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , ex-tra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 6056--6063 []\T1/zi4/m/sl/10 panel.identify[]\T1/ptm/m/n/10 . For []\T1/zi4/m/sl/10 panel. identify[]\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 6056--6063 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For []\T1 /zi4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 trellis.switchFocus[]\T1/ptm/m/n/10 , th ese are used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 6056--6063 [][][]\T1/zi4/m/sl/10 lattice.options[][][][]\T1/ptm/m/n/10 ) for high-light-in g the cho-sen view-port if so re-quested. [2818] [2819] [2820] [2821] Underfull \hbox (badness 4242) in paragraph at lines 6356--6361 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6356--6361 \T1/ptm/m/n/10 ter []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 is used if t here is no group-ing vari-able, oth-er-wise [2822] [2823] Underfull \hbox (badness 2310) in paragraph at lines 6472--6477 []\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/zi4/m/sl/10 x []\T1/ptm/ m/n/10 for ev-ery level of []\T1/zi4/m/sl/10 y []\T1/ptm/m/n/10 (or the other w ay round if [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] Underfull \hbox (badness 3168) in paragraph at lines 7330--7334 []\T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. Use [2836] [2837] [2838] [2839] Underfull \hbox (badness 2012) in paragraph at lines 7601--7604 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2840] [2841] [2842] Underfull \hbox (badness 3333) in paragraph at lines 7808--7810 []\T1/ptm/m/n/10 default colours are ob-tained from []\T1/zi4/m/sl/10 plot.symb ol []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 plot.line []\T1/ptm/m/n/10 us-ing Underfull \hbox (badness 2318) in paragraph at lines 7836--7844 []\T1/zi4/m/sl/10 "spline" []\T1/ptm/m/n/10 adds a cu-bic smooth-ing spline fit (same as [][][]\T1/zi4/m/sl/10 panel.spline[][][][]\T1/ptm/m/n/10 ). [2843] [2844] [2845] [2846] [2847] [2848] [2849] Underfull \hbox (badness 1436) in paragraph at lines 8309--8315 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2850] [2851] [2852] [2853] [2854] [2855] [2856] [2857] Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/zi4/m/sl/10 panel.supe rpose []\T1/ptm/m/n/10 from Underfull \hbox (badness 1092) in paragraph at lines 8924--8926 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 ([]\T1/zi4/m/sl/10 panel.superpose.2 []\T1/ptm/m/n/10 orig-i-n ally con- [2858] [2859] [2860] Underfull \hbox (badness 3895) in paragraph at lines 9085--9088 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/zi4/m/sl/10 type []\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in Underfull \hbox (badness 6625) in paragraph at lines 9095--9095 []\T1/zi4/m/sl/10 perspective[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 distance[]\T1 /ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 zlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 scr een[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 R.mat[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/ 10 aspect[]\T1/ptm/m/n/10 , [2861] Underfull \hbox (badness 1515) in paragraph at lines 9160--9164 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2862] Underfull \hbox (badness 6316) in paragraph at lines 9266--9271 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2863] Underfull \hbox (badness 5908) in paragraph at lines 9283--9286 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by []\T1/zi4/m/sl/10 xscale .components.default []\T1/ptm/m/n/10 and [2864] [2865] [2866] [2867] Underfull \hbox (badness 2418) in paragraph at lines 9574--9578 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing []\T1/z i4/m/sl/10 left, right, left.name, right.name, [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 2310) in paragraph at lines 10018--10022 []\T1/ptm/m/n/10 Factor with lev-els []\T1/zi4/m/sl/10 "Svansota"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Manchuria "[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "No. 475"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "Velvet"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 10023--10026 []\T1/ptm/m/n/10 Factor with 6 lev-els: []\T1/zi4/m/sl/10 "Grand Rapids"[]\T1/p tm/m/n/10 , []\T1/zi4/m/sl/10 "Duluth"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Uni versity Farm"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Morris"[]\T1/ptm/m/n/10 , [2875] [2876] [2877] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma} ) has been already used, duplicate ignored \relax l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma} [2878] [2879] [2880] Underfull \hbox (badness 4144) in paragraph at lines 10473--10476 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10473--10476 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2881] [2882]) (./mgcv-pkg.tex Chapter 24. [2883] [2884] [2885] Underfull \hbox (badness 1142) in paragraph at lines 185--189 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 210--215 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2886] [2887] [2888] [2889] Underfull \hbox (badness 10000) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gamObject[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][] [][]predi ct.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.gam[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/ m/sl/10 gam.side[][][][]\T1/ptm/m/n/10 , [2890] [2891] [2892] [2893] [2894] [2895] Underfull \hbox (badness 1406) in paragraph at lines 704--705 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2896] [2897] Underfull \hbox (badness 1158) in paragraph at lines 814--816 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2898] Underfull \hbox (badness 1259) in paragraph at lines 877--878 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2899] Underfull \vbox (badness 10000) has occurred while \output is active [2900] [2901] [2902] [2903] [2904] [2905] Underfull \hbox (badness 1281) in paragraph at lines 1272--1273 []\T1/zi4/m/sl/10 deviance[]\T1/ptm/m/n/10 ,[]\T1/zi4/m/sl/10 martingale[]\T1/p tm/m/n/10 ,[]\T1/zi4/m/sl/10 score[]\T1/ptm/m/n/10 , or []\T1/zi4/m/sl/10 schoe nfeld []\T1/ptm/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2906] [2907] Underfull \vbox (badness 10000) has occurred while \output is active [2908] Underfull \vbox (badness 10000) has occurred while \output is active [2909] [2910] Underfull \vbox (badness 10000) has occurred while \output is active [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] Underfull \hbox (badness 1142) in paragraph at lines 2604--2608 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2929] Underfull \hbox (badness 1043) in paragraph at lines 2630--2636 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2930] [2931] [2932] [2933] [2934] [2935] Underfull \vbox (badness 10000) has occurred while \output is active [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] [2938] [2939] [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 []\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/zi4/m/sl/10 gam []\T1/pt m/m/n/10 mod-els us-ing []\T1/zi4/m/sl/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (see [2954] [2955] Underfull \vbox (badness 10000) has occurred while \output is active [2956] [2957] [2958] Underfull \hbox (badness 1184) in paragraph at lines 4358--4362 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] Underfull \hbox (badness 1142) in paragraph at lines 5081--5085 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2971] Underfull \hbox (badness 1231) in paragraph at lines 5185--5187 []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 per-forms poorly with bi-nary data, sin ce it uses PQL. It is bet-ter to use []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 wit h [2972] [2973] [2974] Underfull \vbox (badness 10000) has occurred while \output is active [2975] [2976] [2977] [2978] Underfull \hbox (badness 2181) in paragraph at lines 5626--5627 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] Underfull \hbox (badness 10000) in paragraph at lines 6130--6131 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/zi4/m/sl/10 gam(. ..,fit=FALSE) []\T1/ptm/m/n/10 or [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] Underfull \hbox (badness 1142) in paragraph at lines 6715--6719 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2999] [3000] [3001] Underfull \vbox (badness 10000) has occurred while \output is active [3002] [3003] [3004] [3005] Underfull \hbox (badness 1087) in paragraph at lines 7087--7088 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 rho []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/1 0 theta []\T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this case, and if [3006] [3007] [3008] Underfull \vbox (badness 10000) has occurred while \output is active [3009] Underfull \vbox (badness 10000) has occurred while \output is active [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] Underfull \hbox (badness 1242) in paragraph at lines 8046--8047 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [3022] Underfull \hbox (badness 1122) in paragraph at lines 8072--8073 []\T1/ptm/m/n/10 When us-ing [][][]\T1/zi4/m/sl/10 NCV[][][] []\T1/ptm/m/n/10 w ith [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 worth-while per-for-mance im-prove-ments are avail-able by set-ting [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] Underfull \hbox (badness 6001) in paragraph at lines 8785--8787 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] Underfull \vbox (badness 10000) has occurred while \output is active [3046] [3047] Underfull \hbox (badness 1038) in paragraph at lines 9533--9536 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/zi4/m/sl/10 Di m.pdIndot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 coef.pdIdnot[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9533--9536 []\T1/zi4/m/sl/10 logDet.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdConstruc t.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdIdnot[]\T1/ptm/m/n/10 , [3048] Underfull \hbox (badness 10000) in paragraph at lines 9589--9592 []\T1/ptm/m/n/10 These func-tions ([]\T1/zi4/m/sl/10 pdTens[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/sl/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFacto r.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] Underfull \hbox (badness 1852) in paragraph at lines 10261--10264 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3060] [3061] [3062] Underfull \hbox (badness 1852) in paragraph at lines 10430--10433 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3063] [3064] Underfull \vbox (badness 10000) has occurred while \output is active [3065] [3066] Underfull \hbox (badness 1205) in paragraph at lines 10670--10671 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10670--10671 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10676--10681 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3067] Underfull \hbox (badness 1205) in paragraph at lines 10760--10761 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10760--10761 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [3068] [3069] [3070] Underfull \hbox (badness 1253) in paragraph at lines 10959--10961 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [3071] [3072] [3073] [3074] [3075] [3076] Underfull \hbox (badness 4792) in paragraph at lines 11220--11223 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/zi4/m/s l/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/zi4/m/sl/10 gam[][][] []\ T1/ptm/m/n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 11220--11223 \T1/ptm/m/n/10 see [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 . If smooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [3077] Underfull \hbox (badness 10000) in paragraph at lines 11327--11330 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/zi4/m/sl /10 "deviance"[]\T1/ptm/m/n/10 , [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] Underfull \hbox (badness 3861) in paragraph at lines 12118--12121 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [3092] [3093] Underfull \hbox (badness 1320) in paragraph at lines 12233--12238 \T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 b.orig = D*b.repara []\T1/ptm/m/n/10 (wher e []\T1/zi4/m/sl/10 b.orig []\T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec- tor). If ma- [3094] Underfull \hbox (badness 1975) in paragraph at lines 12339--12344 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3095] [3096] Underfull \hbox (badness 1762) in paragraph at lines 12428--12440 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][][]\T1/zi4/m/sl/10 tprs[][][] []\T1/ptm/m/n/10 ); []\T1/zi4/m/sl/10 ts.smooth.spec []\T1/ptm/m/n/10 (thin pla te re-gres-sion splines with [3097] [3098] [3099] Underfull \hbox (badness 7667) in paragraph at lines 12640--12646 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of o ne or two vari-ables, spec-i-fied via terms like [3100] Underfull \hbox (badness 10000) in paragraph at lines 12681--12682 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3101] [3102] [3103] [3104] Underfull \vbox (badness 10000) has occurred while \output is active [3105] Underfull \hbox (badness 10000) in paragraph at lines 12958--12960 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3106] [3107] Underfull \hbox (badness 10000) in paragraph at lines 13088--13089 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3108] [3109] [3110] Underfull \hbox (badness 1436) in paragraph at lines 13224--13231 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 only al-lows one [3111] [3112] Underfull \hbox (badness 10000) in paragraph at lines 13323--13324 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] Underfull \hbox (badness 10000) in paragraph at lines 13924--13930 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13924--13930 []\T1/zi4/m/sl/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 for-mula. Note [3123] [3124] [3125] Underfull \vbox (badness 10000) has occurred while \output is active [3126] Underfull \vbox (badness 10000) has occurred while \output is active [3127] [3128] Underfull \hbox (badness 10000) in paragraph at lines 14268--14269 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3129] [3130] [3131] [3132] Overfull \hbox (35.26862pt too wide) in paragraph at lines 14480--14480 []\T1/zi4/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs ="sz",id=1),data=dat,method="REML")[] [3133] [3134] Underfull \hbox (badness 3895) in paragraph at lines 14626--14629 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of a ny num-ber of vari-ables, spec-i-fied via terms like [3135] Underfull \hbox (badness 10000) in paragraph at lines 14671--14673 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3136] [3137] [3138] [3139] [3140] Underfull \hbox (badness 1371) in paragraph at lines 14951--14957 []\T1/zi4/m/sl/10 bs="ad" []\T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-ti ve smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14962--14964 []\T1/zi4/m/sl/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see Underfull \hbox (badness 1132) in paragraph at lines 14962--14964 [][][]\T1/zi4/m/sl/10 smooth.construct.fs.smooth.spec[][][][]\T1/ptm/m/n/10 ) i s avail-able for the case in which a smooth is [3141] Underfull \hbox (badness 6461) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Duchon.spline[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cubic.regression.spline[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/sl/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4 /m/sl/10 d.spline[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 mrf[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 soap[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Spherical.Spline[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 adaptive.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][][]\T1/ptm/m/n/10 , [3142] [3143] [3144] [3145] Underfull \hbox (badness 2326) in paragraph at lines 15200--15207 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][][]\T1/zi4/m/sl/10 smooth.construct[][][] []\T1/ptm/m/n/10 and [3146] Underfull \hbox (badness 2158) in paragraph at lines 15285--15285 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3147] [3148] [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157] Underfull \vbox (badness 10000) has occurred while \output is active [3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] Overfull \hbox (21.42029pt too wide) in paragraph at lines 16847--16847 []\T1/zi4/m/sl/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL ,unconditional=FALSE, ...)[] [3172] [3173] [3174] Underfull \hbox (badness 1796) in paragraph at lines 16960--16963 []\T1/ptm/m/n/10 other op-tions to pass on to [][][]\T1/zi4/m/sl/10 persp[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 or [][][] \T1/zi4/m/sl/10 contour[][][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183]) (./nlme-pkg.tex [3184] Chapter 25. [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] Underfull \hbox (badness 10000) in paragraph at lines 2252--2258 [][][]\T1/zi4/m/sl/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cor ARMA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [3219] [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.corMatrix .corCompSymm}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.3186 ] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] Underfull \hbox (badness 1067) in paragraph at lines 4411--4416 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] Underfull \hbox (badness 10000) in paragraph at lines 5157--5161 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/sl/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 getCovariate.varFunc[][][][]\T1/ptm/m/n/10 , [3264] [3265] [3266] [3267] [3268] [3269] [3270] Underfull \hbox (badness 10000) in paragraph at lines 5591--5594 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGro ups.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroups.lmList[][][][]\ T1/ptm/m/n/10 , [3271] [3272] [3273] [3274] [3275] [3276] [3277] Underfull \hbox (badness 10000) in paragraph at lines 5972--5977 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 getGroupsFormula.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroupsFormula.lme[][][][]\T1/ptm/m/n/10 , [3278] [3279] [3280] [3281] Underfull \hbox (badness 1490) in paragraph at lines 6247--6258 [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsObject[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.gls[] [][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 qqnorm.gls[][][][]\T1/ptm/m/n/10 , [3282] Underfull \hbox (badness 10000) in paragraph at lines 6311--6313 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3283] [3284] [3285] [3286] [3287] [3288] Underfull \hbox (badness 10000) in paragraph at lines 6720--6722 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3289] [3290] [3291] [3292] Underfull \hbox (badness 10000) in paragraph at lines 6989--6996 [][][]\T1/zi4/m/sl/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gap ply[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gsummary[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plo t.nffGroupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.nfnGroupedD ata[][][][]\T1/ptm/m/n/10 , [3293] [3294] [3295] [3296] Underfull \hbox (badness 10000) in paragraph at lines 7249--7254 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Initialize.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 In itialize.glsStruct[][][][]\T1/ptm/m/n/10 , [3297] [3298] [3299] [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] Underfull \hbox (badness 10000) in paragraph at lines 8531--8533 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3316] [3317] [3318] [3319] [3320] Underfull \hbox (badness 10000) in paragraph at lines 8816--8823 [][][]\T1/zi4/m/sl/10 lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lme.lmLi st[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.lmList[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 pooledSD[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 predict.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 residuals.lmLi st[][][][]\T1/ptm/m/n/10 , [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] Underfull \hbox (badness 10000) in paragraph at lines 9337--9344 [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/zi4/m/sl/10 gls[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik.corStruct[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik .lmList[][][][]\T1/ptm/m/n/10 , [3329] [3330] [3331] [3332] [3333] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9699 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix.1} ) has been already used, duplicate ignored \relax l.9699 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] [3342] [3343] [3344] [3345] Underfull \hbox (badness 1596) in paragraph at lines 10476--10502 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3346] [3347] Underfull \hbox (badness 1490) in paragraph at lines 10592--10598 [][][]\T1/zi4/m/sl/10 nlmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlme.nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlmeObject[][][][]\ T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 nlmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pdClasses [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 reStruct[][][][]\T1/ptm/m/n/10 , [3348] [3349] [3350] Underfull \hbox (badness 10000) in paragraph at lines 10833--10835 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3351] [3352] [3353] [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] Underfull \hbox (badness 1286) in paragraph at lines 13736--13743 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/zi4/m/ sl/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/zi4/m/sl/10 inner []\T1/ptm/m/n/1 0 or [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412] [3413] [3414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects}) has been already used, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects.1}) has been already used, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} [3415] [3416] [3417] [3418] [3419] [3420] [3421] [3422] [3423] [3424] [3425] [3426] Underfull \hbox (badness 1067) in paragraph at lines 15932--15937 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3427] [3428] [3429] [3430] Underfull \hbox (badness 1448) in paragraph at lines 16175--16184 \T1/ptm/m/n/10 Op-tions in-clude []\T1/zi4/m/sl/10 "response" []\T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] Underfull \hbox (badness 1728) in paragraph at lines 16878--16881 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3441] [3442] [3443] [3444] Underfull \hbox (badness 8056) in paragraph at lines 17212--17221 \T1/zi4/m/sl/10 Symmetry" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdCompSymm[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Diagonal" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl /10 pdDiag[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17212--17221 \T1/zi4/m/sl/10 an Identity" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdIdent[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite, Natural Underfull \hbox (badness 5756) in paragraph at lines 17212--17221 \T1/zi4/m/sl/10 Parametrization" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdNatur al[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite" []\T1/ptm/m/ n/10 for [3445] [3446] [3447] [3448] [3449] Underfull \hbox (badness 10000) in paragraph at lines 17534--17542 [][][]\T1/zi4/m/sl/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 var ConstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varConstProp[][][][]\T 1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varIdent[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varPower[][][][]\T1/ptm/m/n/10 , [3450] [3451] [3452] [3453] [3454] [3455] [3456] [3457] [3458] [3459] [3460] Underfull \hbox (badness 10000) in paragraph at lines 18244--18254 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram .corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corRatio[][][][ ]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18244--18254 [][][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Variogram.corSpher[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Vari ogram.default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.gls[][][] []\T1/ptm/m/n/10 , [3461] [3462] [3463] [3464] [3465] Underfull \hbox (badness 5036) in paragraph at lines 18568--18577 [][][]\T1/zi4/m/sl/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.default[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476] [3477] [3478]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom. 1}) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3479] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [3480] [3481] [3482] [3483] [3484] [3485] [3486]) (./rpart-pkg.tex Chapter 27. [3487] [3488] [3489] [3490] [3491] [3492] [3493] [3494] [3495] [3496] Underfull \hbox (badness 10000) in paragraph at lines 771--775 []\T1/ptm/m/n/10 Logical. If []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , adds to the la-bel Underfull \hbox (badness 1348) in paragraph at lines 771--775 \T1/zi4/m/sl/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method []\T1/zi4/m/sl/10 class[]\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 for [3497] [3498] [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515]) (./spatial-pkg.tex [3516] Chapter 28. [3517] [3518] [3519] [3520] [3521] [3522] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535]) (./survival-pkg.tex [3536] Chapter 29. [3537] [3538] [3539] [3540] Underfull \hbox (badness 6412) in paragraph at lines 284--286 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3541] [3542] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml.1}) h as been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} [3543] [3544] [3545] [3546] [3547] [3548] [3549] [3550] [3551] [3552] [3553] [3554] Underfull \hbox (badness 1097) in paragraph at lines 1205--1207 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3555] [3556] [3557] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h as been already used, duplicate ignored \relax l.1407 ...erapy for Stage B/C colon cancer}{colon} [3558] Underfull \hbox (badness 3679) in paragraph at lines 1455--1459 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by []\T1/zi4/m/sl/10 table(colon$nodes, [3559] [3560] [3561] [3562] [3563] [3564] [3565] [3566] [3567] [3568] Underfull \hbox (badness 3250) in paragraph at lines 2143--2158 \T1/ptm/m/n/10 ing guides and prepend []\T1/zi4/m/sl/10 survival:: []\T1/ptm/m/ n/10 onto ev-er-thing, in-clud-ing the spe-cial terms, e.g., Underfull \hbox (badness 10000) in paragraph at lines 2143--2158 []\T1/zi4/m/sl/10 survival::coxph(survival:Surv(time, status) ~ age + survival: :cluster(inst), [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576] [3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587] [3588] [3589] [3590] Underfull \hbox (badness 1389) in paragraph at lines 3663--3665 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3591] [3592] [3593] [3594] Overfull \hbox (467.89665pt too wide) in alignment at lines 3949--3949 [] [] [3595] [3596] [3597] [3598] [3599] [3600] [3601] [3602] [3603] [3604] [3605] [3606] [3607] [3608] [3609] [3610] [3611] [3612] [3613] [3614] [3615] [3616] [3617] [3618] [3619] [3620] Underfull \hbox (badness 5274) in paragraph at lines 5718--5720 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "summary.survfit"[]\T1/p tm/m/n/10 , which is the re-sult of the [3621] [3622] [3623] [3624] [3625] [3626] [3627] [3628] [3629] [3630] [3631] [3632] [3633] [3634] [3635] [3636] [3637] [3638] Underfull \hbox (badness 1281) in paragraph at lines 6986--6989 []\T1/ptm/m/n/10 type of resid-u-als, with choices of []\T1/zi4/m/sl/10 "respon se"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "deviance"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "dfbeta"[]\T1/ptm/m/n/10 , [3639] [3640] [3641] [3642] [3643] [3644] [3645] [3646] [3647] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.7569 ...ata from a soldering experiment}{solder} [3648] [3649] [3650] [3651] [3652] [3653] [3654] [3655] [3656] [3657] [3658] [3659] [3660] [3661] [3662] [3663] [3664] [3665] [3666] [3667] [3668] [3669] [3670] Underfull \hbox (badness 1038) in paragraph at lines 9202--9208 []\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre -dicted sur-vival [3671] [3672] [3673] [3674] [3675] Underfull \hbox (badness 10000) in paragraph at lines 9560--9565 [][][]\T1/zi4/m/sl/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 survfit.object [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][][]\T1/ptm/m/n/10 , [3676] [3677] [3678] [3679] [3680] Underfull \hbox (badness 4441) in paragraph at lines 9950--9960 []\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio n at the [3681] [3682] Underfull \hbox (badness 1490) in paragraph at lines 10125--10134 [][][]\T1/zi4/m/sl/10 survfit.coxph[][][] []\T1/ptm/m/n/10 for sur-vival curves from Cox mod-els, [][][]\T1/zi4/m/sl/10 survfit.object[][][] []\T1/ptm/m/n/10 for a de-scrip-tion Underfull \hbox (badness 2213) in paragraph at lines 10125--10134 \T1/ptm/m/n/10 of the com-po-nents of a surv-fit ob-ject, [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lines.survfit[][][][]\T1/ptm/m/n/10 , [3683] [3684] [3685] [3686] [3687] [3688] [3689] Underfull \hbox (badness 1354) in paragraph at lines 10623--10627 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3690] [3691] [3692] [3693] [3694] [3695] [3696] [3697] [3698] [3699] [3700] [3701] [3702] [3703] [3704] [3705] [3706] [3707] [3708] [3709] [3710] [3711] [3712] [3713]) [3714] No file fullrefman.ind. (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) pdfTeX warning (dest): name{Rfn.tree} has been referenced but does not exist, r eplaced by a fixed one pdfTeX warning (dest): name{Rfn.memory.limit} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.viewports} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.xyplot.zoo} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipsePoints} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipse} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cluster.stats} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chorizon} has been referenced but does not exis t, replaced by a 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This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-02-20> (/usr/share/texmf-dist/tex/latex/base/book.cls Document Class: book 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texmf-dist/tex/latex/url/url.sty) (/usr/share/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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[3] [4] Underfull \hbox (badness 6252) in paragraph at lines 149--157 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber []\T1/zi4/m/n/10 x [ ]\T1/ptm/m/n/10 such that []\T1/zi4/m/n/10 1 - x != 1[]\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/ptm/m/n/10 equals []\T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits []\T 1/ptm/m/n/10 if []\T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 []\T1/ptm/m/n/10 is 2 or []\T1/zi4/m/n/10 double.rounding []\T1/ptm/m/n/10 is 0 ; oth-er-wise, it is []\T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 149--157 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2[]\T1/ptm/m/n/10 . Nor-mally []\T1/z i4/m/n/10 1.110223e-16[]\T1/ptm/m/n/10 . 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Val-ues [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 572--578 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/n/10 insertions[]\T1/ptm/m/n/10 ', [11] [12] [13] (/usr/share/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [14{/usr /share/texmf-dist/fonts/enc/dvips/inconsolata/i4-ts1.enc}] [15] [16] [17] [18] [19] [20] [21] [22] [23] (/usr/share/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texmf-dist/tex/latex/base/ts1cmtt.fd) [24{/usr/share/texmf-dist/fon ts/enc/dvips/cm-super/cm-super-ts1.enc}] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2261--2261 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [36] [37] [38] [39] [40] [41] [42] [43] [44] Underfull \hbox (badness 1721) in paragraph at lines 2926--2930 [][][]\T1/zi4/m/n/10 assign[][][] []\T1/ptm/m/n/10 (and its in-verse [][][]\T1/ zi4/m/n/10 get[][][][]\T1/ptm/m/n/10 ), for ``sub-assign-ment'' such as []\T1/z i4/m/n/10 x[i] <- v[]\T1/ptm/m/n/10 , see [][][]\T1/zi4/m/n/10 [<-[][][][]\T1/p tm/m/n/10 ; fur-ther, [45] [46] [47] [48] [49] [50] [51] Underfull \hbox (badness 2538) in paragraph at lines 3404--3407 []\T1/zi4/m/n/10 unCfillPOSIXlt(x) []\T1/ptm/m/n/10 is a fast [][]prim-i-tive[] [][] ver-sion of []\T1/zi4/m/n/10 balancePOSIXlt(x, fill.only=TRUE, [52] [53] [54] [55] [56] Underfull \vbox (badness 10000) has occurred while \output is active [57] [58] [59] [60] [61] [62] [63] Underfull \hbox (badness 10000) in paragraph at lines 4200--4202 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] [81] [82] Underfull \hbox (badness 2521) in paragraph at lines 5551--5553 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] [93] [94] [95] [96] [97] [98] [99] [100] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6834--6834 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [101] [102] [103] [104] [105] [106] [107] [108] [109] [110] [111] [112] Underfull \hbox (badness 1303) in paragraph at lines 7730--7737 []\T1/zi4/m/n/10 file []\T1/ptm/m/n/10 can be used with []\T1/zi4/m/n/10 descri ption = "clipboard" []\T1/ptm/m/n/10 in mode []\T1/zi4/m/n/10 "r" []\T1/ptm/m/n /10 only. This reads the Underfull \hbox (badness 2261) in paragraph at lines 7741--7746 \T1/zi4/m/n/10 / / github . com / astrand / xclip$[][]\T1/ptm/m/n/10 ) or []\T1 /zi4/m/n/10 xsel []\T1/ptm/m/n/10 ([][]$\T1/zi4/m/n/10 https : / / www . vergen et . net / ~conrad / software / [113] [114] [115] Underfull \vbox (badness 10000) has occurred while \output is active [116] [117] [118] [119] [120] [121] [122] [123] Underfull \hbox (badness 2096) in paragraph at lines 8474--8478 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [124] [125] Underfull \hbox (badness 2351) in paragraph at lines 8589--8592 [][][]\T1/zi4/m/n/10 split[][][] []\T1/ptm/m/n/10 for split-ting a vari-able ac -cord-ing to a group fac-tor; [][][]\T1/zi4/m/n/10 factor[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 tabulate[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 t able[][][][]\T1/ptm/m/n/10 , [126] [127] [128] [129] Underfull \hbox (badness 4479) in paragraph at lines 8906--8917 [][][]\T1/zi4/m/n/10 I[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 plot.data.f rame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 print.data.frame[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/n/10 row.names[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 names[][][] []\T1/ptm/m/n/10 (for the col-umn names), [130] [131] [132] [133] [134] [135] Underfull \hbox (badness 1629) in paragraph at lines 9327--9339 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] Underfull \hbox (badness 2744) in paragraph at lines 12533--12535 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [181] [182] [183] [184] [185] [186] [187] Underfull \vbox (badness 10000) has occurred while \output is active [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \hbox (badness 2253) in paragraph at lines 14737--14739 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see Underfull \hbox (badness 1490) in paragraph at lines 14772--14775 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [211] Underfull \hbox (badness 1565) in paragraph at lines 14854--14858 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [212] Underfull \hbox (badness 4927) in paragraph at lines 14905--14907 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [213] [214] Underfull \hbox (badness 1466) in paragraph at lines 15056--15059 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [215] Underfull \vbox (badness 1418) has occurred while \output is active [216] Underfull \hbox (badness 10000) in paragraph at lines 15187--15191 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15198--15201 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [217] [218] [219] [220] Underfull \hbox (badness 3965) in paragraph at lines 15493--15497 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 5260) in paragraph at lines 15995--15995 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [229] [230] [231] [232] Underfull \hbox (badness 4429) in paragraph at lines 16285--16288 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [233] Underfull \hbox (badness 10000) in paragraph at lines 16392--16394 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [234] Underfull \hbox (badness 2035) in paragraph at lines 16465--16469 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 2452) in paragraph at lines 17088--17092 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17088--17092 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [245] [246] Underfull \hbox (badness 1092) in paragraph at lines 17262--17267 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [247] [248] [249] [250] Underfull \hbox (badness 6741) in paragraph at lines 17515--17519 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [251] [252] [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] Underfull \vbox (badness 10000) has occurred while \output is active [261] Underfull \vbox (badness 10000) has occurred while \output is active [262] [263] [264] [265] [266] [267] [268] [269] [270] [271] Underfull \hbox (badness 1769) in paragraph at lines 18988--18991 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [272] [273] [274] [275] Underfull \hbox (badness 10000) in paragraph at lines 19297--19299 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19303--19312 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [276] [277] [278] [279] [280] [281] [282] [283] [284] Underfull \hbox (badness 1442) in paragraph at lines 19911--19913 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [285] Underfull \hbox (badness 2452) in paragraph at lines 20007--20033 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 20007--20033 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [286] [287] [288] [289] [290] [291] Underfull \hbox (badness 1248) in paragraph at lines 20405--20408 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [292] [293] [294] [295] Underfull \hbox (badness 4739) in paragraph at lines 20672--20674 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 2469) in paragraph at lines 21830--21835 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [313] Underfull \hbox (badness 1675) in paragraph at lines 21917--21926 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , [314] Underfull \hbox (badness 3189) in paragraph at lines 21927--21940 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21975--21978 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21975--21978 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [315] [316] Underfull \hbox (badness 1014) in paragraph at lines 22109--22114 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] Underfull \hbox (badness 1264) in paragraph at lines 22956--22964 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [329] Underfull \hbox (badness 4441) in paragraph at lines 22991--22994 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] Underfull \hbox (badness 5231) in paragraph at lines 23809--23811 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355] [356] [357] Underfull \hbox (badness 6380) in paragraph at lines 24919--24925 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24919--24925 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 2790) in paragraph at lines 25432--25435 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25432--25435 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [366] [367] [368] [369] Underfull \hbox (badness 1194) in paragraph at lines 25760--25763 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [370] [371] [372] Underfull \hbox (badness 2368) in paragraph at lines 25967--25973 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 10000) in paragraph at lines 26357--26360 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [379] [380] [381] [382] [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 26985--26987 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [388] [389] [390] [391] [392] [393] [394] Underfull \hbox (badness 2443) in paragraph at lines 27476--27484 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [395] [396] [397] [398] [399] [400] Underfull \hbox (badness 1881) in paragraph at lines 27906--27909 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [401] Underfull \hbox (badness 6220) in paragraph at lines 27931--27933 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [402] Underfull \hbox (badness 2142) in paragraph at lines 28072--28076 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [403] Underfull \hbox (badness 1968) in paragraph at lines 28129--28134 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [404] [405] [406] Underfull \hbox (badness 10000) in paragraph at lines 28425--28431 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28425--28431 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28425--28431 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28438--28441 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28464--28466 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [407] Underfull \hbox (badness 10000) in paragraph at lines 28510--28515 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28516--28527 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28516--28527 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28528--28531 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [408] [409] [410] [411] [412] Underfull \hbox (badness 10000) in paragraph at lines 28946--28950 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [413] [414] Underfull \hbox (badness 10000) in paragraph at lines 29093--29096 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [415] [416] Underfull \hbox (badness 7925) in paragraph at lines 29174--29178 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29174--29178 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29179--29188 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Underfull \hbox (badness 2726) in paragraph at lines 30193--30196 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] Underfull \vbox (badness 10000) has occurred while \output is active [449] [450] [451] [452] [453] [454] [455] [456] Underfull \hbox (badness 1533) in paragraph at lines 32001--32004 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [457] [458] [459] Underfull \hbox (badness 1163) in paragraph at lines 32172--32183 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [460] [461] [462] [463] [464] [465] [466] [467] Underfull \hbox (badness 6300) in paragraph at lines 32718--32720 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] Underfull \hbox (badness 10000) in paragraph at lines 33841--33845 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33841--33845 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33862--33864 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33865--33869 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [484] [485] [486] [487] [488] [489] [490] [491] [492] Underfull \hbox (badness 1655) in paragraph at lines 34467--34469 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] Underfull \hbox (badness 2261) in paragraph at lines 35670--35675 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] Underfull \hbox (badness 3668) in paragraph at lines 36705--36709 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [525] Underfull \hbox (badness 10000) in paragraph at lines 36796--36807 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] Underfull \hbox (badness 10000) in paragraph at lines 38428--38430 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [550] [551] [552] [553] [554] Underfull \hbox (badness 2913) in paragraph at lines 38846--38850 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [555] [556] [557] [558] Underfull \hbox (badness 1072) in paragraph at lines 39092--39096 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 39097--39101 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39137--39143 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39137--39143 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39137--39143 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39152--39159 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39152--39159 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39152--39159 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39152--39159 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [559] [560] [561] [562] Underfull \hbox (badness 2644) in paragraph at lines 39387--39391 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] Underfull \hbox (badness 1158) in paragraph at lines 40915--40917 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [585] [586] [587] [588] [589] [590] [591] [592] [593] Underfull \hbox (badness 1137) in paragraph at lines 41515--41521 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41533--41538 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [594] [595] Underfull \hbox (badness 1616) in paragraph at lines 41653--41658 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1472) in paragraph at lines 42199--42202 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [604] [605] [606] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42411. [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] Underfull \vbox (badness 10000) has occurred while \output is active [617] Underfull \hbox (badness 10000) in paragraph at lines 43150--43154 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [618] [619] [620] [621] [622] Underfull \hbox (badness 10000) in paragraph at lines 43509--43512 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [623] [624] [625] Underfull \hbox (badness 10000) in paragraph at lines 43693--43697 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [626] [627] [628] [629] [630] [631] [632] [633] [634] Underfull \hbox (badness 10000) in paragraph at lines 44341--44344 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] [647] Underfull \hbox (badness 1990) in paragraph at lines 45257--45265 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45257--45265 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1014) in paragraph at lines 46694--46697 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [669] Underfull \hbox (badness 2401) in paragraph at lines 46827--46831 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [670] [671] Underfull \hbox (badness 3492) in paragraph at lines 46953--46955 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [672] Underfull \hbox (badness 2111) in paragraph at lines 47039--47044 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [673] [674] [675] [676] Underfull \hbox (badness 4001) in paragraph at lines 47287--47289 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 5417) in paragraph at lines 47688--47692 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [683] Underfull \hbox (badness 10000) in paragraph at lines 47749--47753 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [684]) (./compiler-pkg.tex Chapter 2. [685] [686] [687] [688]) (./datasets-pkg.tex Chapter 3. [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764]) (./grDevices-pkg.tex Chapter 4. [765] [766] [767] [768] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [769] [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [778] [779] [780] [781] [782] [783] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [784] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [785] [786] [787] [788] [789] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [796] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [797] [798] [799] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823] [824] [825] Underfull \vbox (badness 10000) has occurred while \output is active [826] [827] [828] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [829] [830] [831] [832] [833] [834] [835] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [842] [843] [844] [845] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [846] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [847] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [848] [849] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [850] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [851] [852] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [853] [854] [855] [856] [857] [858] [859] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [860] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [861] [862] [863] [864] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [865] [866] [867] [868] [869] [870] [871] [872] [873] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [874] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [875] [876] [877] [878] [879] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [880] [881] [882] [883] [884]) (./graphics-pkg.tex Chapter 5. [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Underfull \vbox (badness 10000) has occurred while \output is active [901] [902] [903] [904] [905] [906] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [922] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Underfull \vbox (badness 10000) has occurred while \output is active [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] Underfull \hbox (badness 3229) in paragraph at lines 4733--4738 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [957] [958] [959] [960] [961] Underfull \hbox (badness 1107) in paragraph at lines 5233--5239 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [962] Underfull \hbox (badness 10000) in paragraph at lines 5362--5365 [963] Underfull \hbox (badness 10000) in paragraph at lines 5423--5425 [964 ] [965 ] [966] [967] [968] [969] [970] [971] [972] [973] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6097 \aliasA{plot}{plot.default}{plot} [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6997--6998 [][] [988 ] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] Underfull \hbox (badness 4954) in paragraph at lines 9109--9111 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9111--9113 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1020] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9191 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9191 \HeaderA{units}{Graphical Units}{units} [1021] [1022] [1023] [1024]) (./grid-pkg.tex Chapter 6. [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1043] Underfull \vbox (badness 10000) has occurred while \output is active [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \vbox (badness 10000) has occurred while \output is active [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1106] [1107] [1108] [1109] [1110] [1111] [1112] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1113] [1114] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144]) (./methods-pkg.tex Chapter 7. [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] Underfull \vbox (badness 10000) has occurred while \output is active [1153] Underfull \vbox (badness 10000) has occurred while \output is active [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1171] [1172] [1173] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1174] [1175] [1176] [1177] [1178] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1179] [1180] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1181] [1182] [1183] [1184] [1185] [1186] [1187] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1188] [1189] [1190] [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1193] [1194] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1195] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] Underfull \vbox (badness 10000) has occurred while \output is active [1213] Underfull \vbox (badness 10000) has occurred while \output is active [1214] [1215] [1216] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1217] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1218] [1219] [1220] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1229] [1230] [1231] [1232] Underfull \vbox (badness 10000) has occurred while \output is active [1233] [1234] [1235] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1236] [1237] [1238] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1239] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1240] [1241] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1281] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1282] [1283] [1284] [1285]) (./parallel-pkg.tex [1286] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1287] [1288] [1289] [1290] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1307] [1308] [1309]) (./splines-pkg.tex [1310] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324]) (./stats-pkg.tex Chapter 10. [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1377] [1378] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1424] [1425] [1426] [1427] [1428] Underfull \vbox (badness 10000) has occurred while \output is active [1429] [1430] [1431] Underfull \vbox (badness 10000) has occurred while \output is active [1432] [1433] [1434] [1435] [1436] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] Underfull \vbox (badness 10000) has occurred while \output is active [1457] [1458] [1459] [1460] [1461] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1462] [1463] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1483] [1484] [1485] [1486] [1487] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1488] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1502] [1503] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1513] [1514] [1515] [1516] [1517] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1518] [1519] [1520] [1521] [1522] [1523] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1524] [1525] [1526] [1527] [1528] [1529] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1540] [1541] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1558] [1559] [1560] [1561] [1562] [1563] [1564] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1590] [1591] Underfull \vbox (badness 10000) has occurred while \output is active [1592] Underfull \vbox (badness 10000) has occurred while \output is active [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1606] [1607] [1608] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Underfull \vbox (badness 10000) has occurred while \output is active [1609] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1610] [1611] [1612] [1613] [1614] [1615] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1631] [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1685] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1710] [1711] [1712] [1713] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1714] [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] Underfull \vbox (badness 10000) has occurred while \output is active [1737] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1738] [1739] [1740] [1741] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1742] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1744] [1745] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1746] [1747] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1748] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1749] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1750] [1751] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1769] [1770] [1771] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1772] [1773] [1774] [1775] [1776] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1777] [1778] [1779] Underfull \hbox (badness 1127) in paragraph at lines 30293--30296 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate only for [1780] [1781] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1801] [1802] [1803] [1804] [1805] [1806] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1815] [1816] [1817] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1818] [1819] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1820] [1821] [1822] [1823] [1824]) (./stats4-pkg.tex Chapter 11. [1825] [1826] [1827] Underfull \vbox (badness 10000) has occurred while \output is active [1828] [1829] [1830] [1831] [1832] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1833] [1834] [1835]) (./tcltk-pkg.tex [1836] Chapter 12. [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \vbox (badness 10000) has occurred while \output is active [1844] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856]) (./tools-pkg.tex Chapter 13. [1857] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1858] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1859] [1860] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [1861] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [1862] [1863] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1875] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [1876] [1877] [1878] [1879] [1880] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [1881] [1882] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [1883] [1884] [1885] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [1893] [1894] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1919] [1920] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [1927] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1928] [1929] [1930] [1931] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [1932] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1933] [1934] [1935]) (./utils-pkg.tex [1936] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [1948] [1949] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [1950] [1951] [1952] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1953] [1954] [1955] Underfull \vbox (badness 10000) has occurred while \output is active [1956] [1957] [1958] [1959] [1960] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [1971] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [1972] [1973] [1974] [1975] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \hbox (badness 6842) in paragraph at lines 4048--4053 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [1995] Underfull \hbox (badness 1430) in paragraph at lines 4111--4115 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [1996] Underfull \hbox (badness 1184) in paragraph at lines 4182--4198 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4182--4198 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4182--4198 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [1997] [1998] Underfull \hbox (badness 10000) in paragraph at lines 4332--4334 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5111 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5111 ...mat Unordered and Ordered Lists}{format} [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] Underfull \hbox (badness 1622) in paragraph at lines 5634--5638 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2019] [2020] [2021] [2022] [2023] Underfull \hbox (badness 1448) in paragraph at lines 6019--6024 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] Underfull \hbox (badness 1371) in paragraph at lines 6567--6569 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2032] Underfull \hbox (badness 1502) in paragraph at lines 6656--6662 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6656--6662 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2033] [2034] [2035] Underfull \hbox (badness 10000) in paragraph at lines 6833--6842 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6833--6842 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2036] Underfull \hbox (badness 2150) in paragraph at lines 6895--6898 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2037] [2038] Underfull \hbox (badness 3118) in paragraph at lines 7034--7036 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2039] [2040] Underfull \hbox (badness 1325) in paragraph at lines 7213--7217 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2041] Underfull \hbox (badness 1424) in paragraph at lines 7305--7308 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2042] Underfull \hbox (badness 3219) in paragraph at lines 7377--7384 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7377--7384 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7377--7384 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7377--7384 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7385--7388 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2043] Underfull \hbox (badness 1024) in paragraph at lines 7514--7517 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2044] Underfull \hbox (badness 10000) in paragraph at lines 7547--7552 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2045] Underfull \hbox (badness 5133) in paragraph at lines 7606--7610 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 10000) in paragraph at lines 8270--8272 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] Underfull \hbox (badness 2310) in paragraph at lines 9057--9062 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 1248) in paragraph at lines 9628--9632 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2076] Underfull \hbox (badness 1789) in paragraph at lines 9706--9708 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2077] [2078] [2079] [2080] Underfull \hbox (badness 2600) in paragraph at lines 9930--9933 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] Underfull \hbox (badness 1097) in paragraph at lines 10567--10570 []\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2089] [2090] Underfull \hbox (badness 3000) in paragraph at lines 10703--10708 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 read.table[][][][]\T1/ptm/m/n/10 ; [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] Underfull \hbox (badness 2134) in paragraph at lines 11298--11303 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 write.table[][][][]\T1/ptm/m/n/10 ; [2099] Underfull \hbox (badness 10000) in paragraph at lines 11354--11359 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11354--11359 []\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 1824) in paragraph at lines 11852--11856 \T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed [2108] [2109] [2110] [2111] [2112] [2113] Underfull \hbox (badness 4060) in paragraph at lines 12300--12303 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12323--12323 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2114] [2115] [2116] [2117] Underfull \hbox (badness 2150) in paragraph at lines 12578--12580 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2118] [2119] [2120] Underfull \hbox (badness 10000) in paragraph at lines 12798--12802 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able [2121] Underfull \hbox (badness 10000) in paragraph at lines 12831--12837 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2762) in paragraph at lines 12846--12852 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2122] [2123] Underfull \hbox (badness 1009) in paragraph at lines 13021--13033 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2124] Underfull \hbox (badness 4779) in paragraph at lines 13061--13063 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and Underfull \hbox (badness 1077) in paragraph at lines 13091--13098 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2125] [2126] [2127] [2128] [2129] [2130] Underfull \hbox (badness 3780) in paragraph at lines 13516--13522 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13534--13537 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2131] [2132] [2133] [2134] Underfull \hbox (badness 2302) in paragraph at lines 13744--13746 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2135] [2136] [2137] [2138] Underfull \hbox (badness 4441) in paragraph at lines 14043--14048 []\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/ m/sl/10 ) []\T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 14052--14055 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2139] [2140] [2141] [2142] [2143] [2144] [2145] Underfull \hbox (badness 2932) in paragraph at lines 14483--14490 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14483--14490 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. Ob- [2146] [2147] Underfull \hbox (badness 1460) in paragraph at lines 14647--14656 \T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools []\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n /10 which used Underfull \hbox (badness 1019) in paragraph at lines 14665--14677 []\T1/ptm/m/n/10 For GNU []\T1/zi4/m/sl/10 tar[]\T1/ptm/m/n/10 , `[]\T1/zi4/m/s l/10 --format=ustar[]\T1/ptm/m/n/10 ' forces a more portable for-mat. (The de-f ault is set at Underfull \hbox (badness 1527) in paragraph at lines 14665--14677 \T1/ptm/m/n/10 com-pi-la-tion and will be shown at the end of the out-put from []\T1/zi4/m/sl/10 tar --help[]\T1/ptm/m/n/10 : for ver-sion [2148] [2149] Underfull \hbox (badness 6510) in paragraph at lines 14797--14801 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men t vari-able Underfull \hbox (badness 10000) in paragraph at lines 14804--14807 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14804--14807 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] Underfull \hbox (badness 10000) in paragraph at lines 15477--15482 []\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15477--15482 [][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [ ]\T1/ptm/m/n/10 and Underfull \hbox (badness 1052) in paragraph at lines 15483--15485 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2159] Underfull \hbox (badness 10000) in paragraph at lines 15542--15545 [][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download .packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][ ][]\T1/ptm/m/n/10 , [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174]) [2175] [2176] (./KernSmooth-pkg.tex Chapter 15. [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186]) (./MASS-pkg.tex Chapter 16. [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.g lm}) has been already used, duplicate ignored \relax l.1479 ...{confint.glm}{confint-MASS}{confint.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.n ls}) has been already used, duplicate ignored \relax l.1480 ...{confint.nls}{confint-MASS}{confint.nls} [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] Underfull \hbox (badness 10000) in paragraph at lines 2789--2794 []\T1/zi4/m/sl/10 "geometric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "log-normal"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "lognormal"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "negative [2226] [2227] Underfull \hbox (badness 4686) in paragraph at lines 2961--2963 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] Underfull \hbox (badness 1117) in paragraph at lines 4740--4743 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2253] Underfull \hbox (badness 1117) in paragraph at lines 4819--4822 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6086 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk.1}) h as been already used, duplicate ignored \relax l.6086 ...sical N, P, K Factorial Experiment}{npk} [2271] [2272] [2273] [2274] [2275] [2276] [2277] [2278] [2279] [2280] [2281] [2282] Underfull \hbox (badness 1117) in paragraph at lines 6987--6994 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2283] Underfull \hbox (badness 3138) in paragraph at lines 7058--7064 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2284] [2285] [2286] Underfull \hbox (badness 1910) in paragraph at lines 7237--7240 []\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than []\T1/zi4/m/sl/10 min(p, [2287] [2288] [2289] [2290] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm}) has been already used, duplicate ignored \relax l.7514 ... for Profiling glm Objects}{profile.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm.1}) has been already used, duplicate ignored \relax l.7514 ... for Profiling glm Objects}{profile.glm} [2291] [2292] [2293] [2294] Underfull \hbox (badness 4686) in paragraph at lines 7809--7811 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2295] [2296] [2297] [2298] [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] [2331]) (./Matrix-pkg.tex [2332] Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 35--38 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 35--38 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2333] Underfull \hbox (badness 1769) in paragraph at lines 89--92 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal }) has been already used, duplicate ignored \relax l.182 ...{all.equal}{all.equal-methods}{all.equal} [2335] Underfull \hbox (badness 3098) in paragraph at lines 264--266 []\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic func-tion [2336] [2337] [2338] Underfull \hbox (badness 5119) in paragraph at lines 492--496 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2339] [2340] Underfull \hbox (badness 2035) in paragraph at lines 590--593 []\T1/ptm/m/n/10 The value of []\T1/zi4/m/sl/10 bdiag() []\T1/ptm/m/n/10 in-her -its from class [][][]\T1/zi4/m/sl/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , whe reas []\T1/zi4/m/sl/10 .bdiag() []\T1/ptm/m/n/10 re-turns a [2341] [2342] [2343] Underfull \hbox (badness 5817) in paragraph at lines 913--916 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 BunchKaufmanFactorization[][][][]\ T1/ptm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][ ][]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 6758) in paragraph at lines 919--924 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("BunchKaufman", ...) Underfull \hbox (badness 2961) in paragraph at lines 919--924 []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more typ-i-cally ob-tained as the value of [2344] [2345] Underfull \hbox (badness 10000) in paragraph at lines 1081--1086 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class [2346] [2347] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2}) has been already used, duplicate ignored \relax l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2}) has been already used, duplicate ignored \relax l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods} [2348] Underfull \hbox (badness 10000) in paragraph at lines 1322--1329 []\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/zi4/m/sl/10 CHMfactor [] \T1/ptm/m/n/10 is based on CHOLMOD's C-level [2349] [2350] [2351] [2352] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha s been already used, duplicate ignored \relax l.1625 \aliasA{chol}{chol-methods}{chol} Underfull \hbox (badness 6220) in paragraph at lines 1656--1658 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2353] Underfull \hbox (badness 2334) in paragraph at lines 1730--1734 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 1730--1734 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2354] Underfull \vbox (badness 10000) has occurred while \output is active [2355] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol2inv} ) has been already used, duplicate ignored \relax l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv} [2356] [2357] Underfull \hbox (badness 10000) in paragraph at lines 2005--2008 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 CholeskyFactorization[][][][]\T1/p tm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\ T1/ptm/m/n/10 , by class Underfull \hbox (badness 7722) in paragraph at lines 2011--2019 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 1990) in paragraph at lines 2051--2060 []\T1/ptm/m/n/10 In \T1/ptm/b/n/10 Ma-trix []\T1/zi4/m/sl/10 < 1.6-0[]\T1/ptm/m /n/10 , class []\T1/zi4/m/sl/10 Cholesky []\T1/ptm/m/n/10 ex-tended [][][]\T1/z i4/m/sl/10 dtrMatrix[][][] []\T1/ptm/m/n/10 and class []\T1/zi4/m/sl/10 pCholes ky []\T1/ptm/m/n/10 ex-tended Underfull \hbox (badness 2334) in paragraph at lines 2066--2070 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2066--2070 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2358] [2359] Underfull \hbox (badness 6220) in paragraph at lines 2185--2187 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2360] [2361] Underfull \hbox (badness 2334) in paragraph at lines 2315--2319 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2315--2319 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2362] Underfull \vbox (badness 10000) has occurred while \output is active [2363] Underfull \vbox (badness 10000) has occurred while \output is active [2364] [2365] [2366] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colMeans} ) has been already used, duplicate ignored \relax l.2696 ...asA{colMeans}{colSums-methods}{colMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colSums}) has been already used, duplicate ignored \relax l.2704 \aliasA{colSums}{colSums-methods}{colSums} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowMeans} ) has been already used, duplicate ignored \relax l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowSums}) has been already used, duplicate ignored \relax l.2719 \aliasA{rowSums}{colSums-methods}{rowSums} [2367] [2368] [2369] Underfull \hbox (badness 3547) in paragraph at lines 2888--2891 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2370] [2371] [2372] [2373] [2374] [2375] Underfull \hbox (badness 1983) in paragraph at lines 3390--3398 []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unpackedMatrix[][][][]\T1/ptm/m/n/10 . Al-ter-na-tively into the (cur-rently) three sub-classes [][][]\T1/zi4/m/sl/ 10 ddenseMatrix[][][][]\T1/ptm/m/n/10 , [2376] [2377] [2378] [2379] Underfull \hbox (badness 2717) in paragraph at lines 3712--3716 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2380] Underfull \hbox (badness 3417) in paragraph at lines 3828--3830 []\T1/zi4/m/sl/10 .sparseDiagonal() []\T1/ptm/m/n/10 ex-ists pri-mar-ily to lev er-age ef-fi-cient C-level meth-ods avail-able for [2381] [2382] Underfull \hbox (badness 8019) in paragraph at lines 3933--3935 []\T1/zi4/m/sl/10 signature(x = "nMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cally eq uiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [][][]\T1/zi4/m/sl/1 0 which[][][](x, Underfull \hbox (badness 10000) in paragraph at lines 3936--3940 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these g roup meth-ods re-turn a [2383] [2384] [2385] [2386] Underfull \hbox (badness 1902) in paragraph at lines 4263--4265 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) []\T1/ptm/m/n/10 is some-times prefer-able to (and more ef-fi-cient than) []\T1/zi4/m/sl/10 zapsmall(x, Underfull \hbox (badness 2020) in paragraph at lines 4300--4303 []\T1/ptm/m/n/10 a typ-i-cally sparse ma-trix; in-ter-nally co-erced to ei-ther []\T1/zi4/m/sl/10 "[][]dgCMatrix[][][]" []\T1/ptm/m/n/10 or [2387] [2388] [2389] Underfull \hbox (badness 4378) in paragraph at lines 4503--4512 []\T1/ptm/m/n/10 or [][][]\T1/zi4/m/sl/10 chol[][][]() []\T1/ptm/m/n/10 is typ- i-cally used, e.g., see []\T1/zi4/m/sl/10 selectMethod("coerce", c(from="dsyMat rix", [2390] [2391] [2392] [2393] Underfull \hbox (badness 10000) in paragraph at lines 4834--4837 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , by class [ ]\T1/zi4/m/sl/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/zi4/m/sl/10 "spa rseMatrix"[]\T1/ptm/m/n/10 , by classes [2394] Underfull \hbox (badness 4518) in paragraph at lines 4929--4932 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = Underfull \hbox (badness 3690) in paragraph at lines 4932--4935 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = [2395] [2396] Underfull \hbox (badness 2318) in paragraph at lines 5035--5039 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dgCMatrix"[]\T1/ptm/m/n/10 , di-rectl y. Class []\T1/zi4/m/sl/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Clas s []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , [2397] Underfull \hbox (badness 3240) in paragraph at lines 5151--5155 []\T1/zi4/m/sl/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/ n/10 : the [][][]\T1/zi4/m/sl/10 determinant[][][](x) [2398] [2399] [2400] [2401] Underfull \hbox (badness 10000) in paragraph at lines 5399--5401 []\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir -tual class [2402] Underfull \hbox (badness 10000) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/s l/10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L)[]\T 1/ptm/m/n/10 . Underfull \hbox (badness 1776) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1"]] []\T1/ptm/m/n/10 rep-re-sent the same per-mu-ta-tion ma-trix Underfull \hbox (badness 10000) in paragraph at lines 5529--5544 []\T1/zi4/m/sl/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl /10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L, U, Q )[]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl/ 10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(L, U, P)[]\ T1/ptm/m/n/10 . Underfull \hbox (badness 1142) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1."]] []\T1/ptm/m/n/10 are iden-ti-cal mod-ulo []\T1/zi4/m/sl/10 Dimna mes[]\T1/ptm/m/n/10 . The [2403] [2404] [2405] [2406] [2407] [2408] Underfull \hbox (badness 1087) in paragraph at lines 5987--5993 []\T1/ptm/m/n/10 a string whose first three char-ac-ters spec-ify the class of the re-sult. It Underfull \hbox (badness 10000) in paragraph at lines 6000--6002 []\T1/ptm/m/n/10 a string in []\T1/zi4/m/sl/10 c("trace", "sumLog", "prod", "mi n", "max", "range", [2409] [2410] [2411] [2412] Underfull \hbox (badness 1931) in paragraph at lines 6262--6264 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the []\T1/zi4/m/sl/10 zero.print [] \T1/ptm/m/n/10 codes should be aligned, see [2413] [2414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.image}) h as been already used, duplicate ignored \relax l.6399 \aliasA{image}{image-methods}{image} [2415] Underfull \hbox (badness 1005) in paragraph at lines 6476--6481 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. []\T1/zi4/m/sl/10 N A []\T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1189) in paragraph at lines 6476--6481 \T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 as by de-fault, []\ T1/zi4/m/sl/10 border.col <- if(lwd < .01) NA else NULL []\T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 6495--6498 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ][]\T1/zi4/m/sl/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use [2416] Overfull \hbox (42.75635pt too wide) in paragraph at lines 6545--6545 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2417] [2418] [2419] [2420] Underfull \hbox (badness 1509) in paragraph at lines 6810--6812 []\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be a per-mu-ta-tion of [2421] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h as been already used, duplicate ignored \relax l.6888 \aliasA{anyNA}{is.na-methods}{anyNA} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.finite }) has been already used, duplicate ignored \relax l.6895 ...asA{is.finite}{is.na-methods}{is.finite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.infini te}) has been already used, duplicate ignored \relax l.6903 ...is.infinite}{is.na-methods}{is.infinite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.na}) h as been already used, duplicate ignored \relax l.6911 \aliasA{is.na}{is.na-methods}{is.na} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.nan}) has been already used, duplicate ignored \relax l.6918 \aliasA{is.nan}{is.na-methods}{is.nan} [2422] [2423] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.isSymmetr ic}) has been already used, duplicate ignored \relax l.7077 ...etric}{isSymmetric-methods}{isSymmetric} [2424] Overfull \hbox (26.39984pt too wide) in paragraph at lines 7124--7124 []\T1/zi4/m/sl/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$dou ble.eps, tol1 = 8 * tol, ...)[] [2425] [2426] [2427] Underfull \vbox (badness 10000) has occurred while \output is active [2428] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kronecker }) has been already used, duplicate ignored \relax l.7453 ...kronecker}{kronecker-methods}{kronecker} [2429] [2430] [2431 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,ndiMatr ix,Matrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.7725 \item[\code{Dim},\code{Dimnames}:] The dimension (a length-2] Underfull \hbox (badness 2478) in paragraph at lines 7736--7741 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7744--7747 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 7968--7971 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2435] Underfull \hbox (badness 10000) in paragraph at lines 8029--8032 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2436] [2437] [2438] [2439] pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rpcent.* .Rpcent.}) has been already used, duplicate ignored \relax l.8310 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod }) has been already used, duplicate ignored \relax l.8384 ...A{crossprod}{matmult-methods}{crossprod} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrosspro d}) has been already used, duplicate ignored \relax l.8460 ...tcrossprod}{matmult-methods}{tcrossprod} [2440] Underfull \hbox (badness 10000) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na-tures (use Underfull \hbox (badness 5359) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-t rix mul-ti-pli-ca-tion. Mul-ti-pli-ca-tion Underfull \hbox (badness 10000) in paragraph at lines 8627--8629 []\T1/zi4/m/sl/10 signature(x = "CsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 8629--8631 []\T1/zi4/m/sl/10 signature(x = "TsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an [2441] [2442] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has been already used, duplicate ignored \relax l.8856 \aliasA{det}{Matrix-class}{det} [2443] Underfull \hbox (badness 1527) in paragraph at lines 8933--8935 []\T1/zi4/m/sl/10 signature(x = "Matrix")[]\T1/ptm/m/n/10 : sim-ply de-fined as []\T1/zi4/m/sl/10 prod(dim(x)) []\T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 8941--8944 []\T1/zi4/m/sl/10 signature(object = "Matrix")[]\T1/ptm/m/n/10 : draws an [][][ ]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 8946--8949 [2444] [2445] [2446] Underfull \hbox (badness 10000) in paragraph at lines 9148--9150 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", logarithm = "missing")[] \T1/ptm/m/n/10 : sets Underfull \hbox (badness 10000) in paragraph at lines 9154--9156 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "NULL")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with Underfull \hbox (badness 10000) in paragraph at lines 9156--9158 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "list")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with [2447] Underfull \hbox (badness 10000) in paragraph at lines 9193--9196 []\T1/ptm/m/n/10 Generic func-tions [][][]\T1/zi4/m/sl/10 expand1[][][] []\T1/p tm/m/n/10 and [][][]\T1/zi4/m/sl/10 expand2[][][] []\T1/ptm/m/n/10 for con-stru ct-ing ma-trix fac-tors from [2448] Underfull \hbox (badness 10000) in paragraph at lines 9311--9313 []\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/zi4/m/sl/10 X <- (X + t(X))/2 [ ]\T1/ptm/m/n/10 should be done, af-ter []\T1/zi4/m/sl/10 X <- [2449] [2450] Underfull \vbox (badness 10000) has occurred while \output is active [2451] Underfull \hbox (badness 2478) in paragraph at lines 9507--9512 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 9515--9518 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2452] [2453] Underfull \hbox (badness 5924) in paragraph at lines 9696--9698 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2454] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) ha s been already used, duplicate ignored \relax l.9738 \aliasA{norm}{norm-methods}{norm} [2455] [2456] [2457] Underfull \hbox (badness 10000) in paragraph at lines 10031--10034 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2458] Underfull \hbox (badness 10000) in paragraph at lines 10095--10098 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2459] [2460] [2461] Underfull \hbox (badness 4242) in paragraph at lines 10295--10298 [][][]\T1/zi4/m/sl/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unp ack[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/zi4/m/sl/10 "[][] unpackedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes [2462] Underfull \hbox (badness 3547) in paragraph at lines 10383--10386 []\T1/zi4/m/sl/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and o th-ers listed by []\T1/zi4/m/sl/10 showMethods("%*%", [2463] [2464] [2465] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.10601 \aliasA{qr}{qr-methods}{qr} [2466] [2467] [2468] [2469] Underfull \hbox (badness 7186) in paragraph at lines 10845--10851 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/zi4/m/sl/10 qr[][][](x, tol, [2470] [2471] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h as been already used, duplicate ignored \relax l.11002 \aliasA{rcond}{rcond-methods}{rcond} [2472] [2473] [2474] [2475] Underfull \hbox (badness 2351) in paragraph at lines 11284--11292 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1509) in paragraph at lines 11284--11292 \T1/ptm/m/n/10 in-dices, if not []\T1/zi4/m/sl/10 symmetric [][]sample.int[][][ ](nrow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/zi4/m/sl/10 rand.x []\T1/pt m/m/n/10 is not []\T1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 --- [2476] [2477] Underfull \hbox (badness 10000) in paragraph at lines 11441--11444 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 SchurFactorization[][][][]\T1/ptm/ m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\T1/ ptm/m/n/10 , by class [2478] [2479] [2480] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h as been already used, duplicate ignored \relax l.11630 \aliasA{solve}{solve-methods}{solve} [2481] Underfull \hbox (badness 5316) in paragraph at lines 11816--11821 []\T1/ptm/m/n/10 Methods for dense []\T1/zi4/m/sl/10 a []\T1/ptm/m/n/10 are bui lt on 14 LA-PACK rou-tines: class []\T1/zi4/m/sl/10 d..Matrix[]\T1/ptm/m/n/10 , where [2482] Underfull \hbox (badness 10000) in paragraph at lines 11916--11919 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2483] Underfull \hbox (badness 10000) in paragraph at lines 11952--11955 []\T1/ptm/m/n/10 character string or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or (co-er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 11963--11967 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] Underfull \hbox (badness 10000) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 (object = "sparseMatrix", uniqT=FALSE)[]\T1/ptm/m/n/10 : Re-t urns an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 "sparseSummary" []\T1/ptm/m/n/10 which is ba-si-cally a [][][ ]\T1/zi4/m/sl/10 data.frame[][][] []\T1/ptm/m/n/10 with columns []\T1/zi4/m/sl/ 10 (i,j,x) []\T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 signature(from = "factor", to = "sparseMatrix")[]\T1/ptm/m/n/ 10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 "sparseMatrix" []\T1/ptm/m/n/10 pro-duces the ma-trix of in-d i-ca-tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2492] [2493] [2494] [2495] [2496] Underfull \hbox (badness 5036) in paragraph at lines 12918--12920 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2497] Underfull \hbox (badness 2828) in paragraph at lines 13084--13087 []\T1/zi4/m/sl/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m /n/10 co-erces sparse vec-tors to Underfull \hbox (badness 2486) in paragraph at lines 13106--13109 []\T1/zi4/m/sl/10 signature(x = "sparseVector") []\T1/ptm/m/n/10 re-peat []\T1/ zi4/m/sl/10 x[]\T1/ptm/m/n/10 , with the same ar-gu-ment list []\T1/zi4/m/sl/10 (x, times, [2498] [2499] [2500] [2501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<.Rdash. }) has been already used, duplicate ignored \relax l.13311 ...\Rdash{}}{subassign-methods}{[<.Rdash.} Underfull \hbox (badness 6910) in paragraph at lines 13398--13400 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2502] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has b een already used, duplicate ignored \relax l.13445 \aliasA{[}{subscript-methods}{[} [2503] [2504] Underfull \hbox (badness 2057) in paragraph at lines 13656--13658 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., Underfull \hbox (badness 10000) in paragraph at lines 13670--13675 []\T1/zi4/m/sl/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-tri x, in-her-it-ing from [][][]\T1/zi4/m/sl/10 generalMatrix[][][][]\T1/ptm/m/n/10 , [2505] [2506] Underfull \hbox (badness 10000) in paragraph at lines 13826--13831 []\T1/ptm/m/n/10 Note that all []\T1/zi4/m/sl/10 new(.)[]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 spMatrix[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 spar seMatrix[][][](*, repr="T") []\T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 13832--13838 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as []\ T1/zi4/m/sl/10 %*% []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 crossprod []\T1/ptm/m /n/10 are de-fined [2507] [2508] [2509] Overfull \hbox (21.75807pt too wide) in paragraph at lines 14021--14027 []\T1/ptm/m/n/10 GAL lat-tice file `\T1/zi4/m/sl/10 usc_q.GAL\T1/ptm/m/n/10 ' ( re-trieved in 2008 from `\T1/zi4/m/sl/10 http://sal.uiuc.edu/weights/zips/usc.z ip\T1/ptm/m/n/10 ' [2510] [2511] [2512]) (./boot-pkg.tex Chapter 18. [2513] [2514] [2515] [2516] [2517] [2518] [2519] [2520] [2521] [2522] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2523] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2524] Underfull \vbox (badness 10000) has occurred while \output is active [2525] [2526] [2527] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2528] [2529] [2530] [2531] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2532] [2533] [2534] [2535] [2536] [2537] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are []\T1/zi4/m/sl/10 "ordinary" []\T1/ptm/m/n/10 (case re-sam-pling), [2538] [2539] Underfull \vbox (badness 10000) has occurred while \output is active [2540] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2541] [2542] [2543] [2544] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2545] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2546] [2547] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/zi4/m /sl/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 n []\T1/ptm/m/n /10 is the sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if []\T1/zi4/m/sl/10 unbiased []\T1/ptm/m/n/10 is []\T1/zi 4/m/sl/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/zi4/m/sl/10 1/n [ ]\T1/ptm/m/n/10 is used. This is mul-ti-plied by [2548] [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] [2558] [2559] [2560] [2561] [2562] [2563] [2564] [2565] [2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2582] [2583] [2584] [2585] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2586] [2587] [2588] [2589] [2590] [2591] [2592] [2593] [2594] [2595] [2596] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/zi4/m/sl/10 " saddle.distn"[]\T1/ptm/m/n/10 . See the help file for [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2606] [2607] [2608] [2609] [2610] [2611] [2612] [2613] [2614] [2615]) (./class-pkg.tex [2616] Chapter 19. [2617] [2618] [2619] [2620] [2621] [2622] [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] [2632]) (./cluster-pkg.tex Chapter 20. [2633] [2634] [2635] [2636] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] Underfull \hbox (badness 1412) in paragraph at lines 782--787 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][][]\T1/zi4/m/sl/10 agnes[][][][] \T1/ptm/m/n/10 ), orig-i-nally. Met-ric []\T1/zi4/m/sl/10 "jaccard"[]\T1/ptm/m/ n/10 : Kamil Ko-zlowski [2645] Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2646] [2647] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2648] [2649] [2650] [2651] [2652] [2653] Underfull \hbox (badness 10000) in paragraph at lines 1474--1477 [2654] [2655] Underfull \hbox (badness 2503) in paragraph at lines 1583--1586 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/1 0 or []\T1/zi4/m/sl/10 "twins"[]\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2656] Underfull \hbox (badness 4954) in paragraph at lines 1680--1682 []\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/zi4/m/s l/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2657] Underfull \hbox (badness 7667) in paragraph at lines 1694--1698 []\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault \T1/ptm/m/n/10 for all nu-meric Underfull \hbox (badness 10000) in paragraph at lines 1694--1698 \T1/ptm/m/n/10 (incl []\T1/zi4/m/sl/10 integer[]\T1/ptm/m/n/10 ) columns of []\ T1/zi4/m/sl/10 x[]\T1/ptm/m/n/10 , aka []\T1/zi4/m/sl/10 "I" []\T1/ptm/m/n/10 i n re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2658] [2659] Overfull \hbox (5.24408pt too wide) in paragraph at lines 1866--1866 []\T1/zi4/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated * A*symmetric binary (w/ warning)[] Overfull \hbox (11.23795pt too wide) in paragraph at lines 1877--1877 []\T1/zi4/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id entical to treating them as "N" :[] [2660] [2661] [2662] [2663] [2664] Underfull \hbox (badness 10000) in paragraph at lines 2212--2215 Underfull \hbox (badness 10000) in paragraph at lines 2223--2229 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also th e [][][]\T1/zi4/m/sl/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/zi4/m/s l/10 ellipsoid []\T1/ptm/m/n/10 ob-jects. [2665] [2666] [2667] [2668] Underfull \hbox (badness 6675) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676] Underfull \hbox (badness 2980) in paragraph at lines 3059--3063 [][][]\T1/zi4/m/sl/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-e nces; [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 daisy[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [2677] [2678] [2679] [2680] [2681] [2682] Underfull \hbox (badness 1142) in paragraph at lines 3398--3401 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2683] Underfull \hbox (badness 1142) in paragraph at lines 3517--3520 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2684] [2685] [2686] [2687] Underfull \hbox (badness 2582) in paragraph at lines 3740--3745 [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 clusplot .default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pam[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 clara[][][][]\T1/ptm/m/n/10 , [2688] Underfull \hbox (badness 2698) in paragraph at lines 3802--3807 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls []\T1/ zi4/m/sl/10 plot([][]as.hclust[][][](x), ...)[]\T1/ptm/m/n/10 , which Underfull \hbox (badness 4792) in paragraph at lines 3802--3807 \T1/ptm/m/n/10 dis-patches to [][][]\T1/zi4/m/sl/10 plot.hclust[][][](..)[]\T1/ ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/zi4/m/sl/10 x x <- [2689] Underfull \hbox (badness 10000) in paragraph at lines 3875--3877 []\T1/ptm/m/n/10 Available as `\T1/zi4/m/sl/10 pluton.dat\T1/ptm/m/n/10 ' from the archive of the Uni-ver-sity of Antwer-pen, [2690] [2691] [2692] Underfull \hbox (badness 10000) in paragraph at lines 4089--4091 []\T1/ptm/m/n/10 a []\T1/zi4/m/sl/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a []\T1/zi4/m/sl/10 summary.dissimilarity []\T1/ptm/m/n/10 one for [2693] [2694] [2695] [2696] Underfull \hbox (badness 2626) in paragraph at lines 4318--4323 []\T1/ptm/m/n/10 arguments passed [][][]\T1/zi4/m/sl/10 barplot[][][]()[]\T1/pt m/m/n/10 ; note that the de-fault used to be []\T1/zi4/m/sl/10 col = [2697] Underfull \hbox (badness 1383) in paragraph at lines 4395--4400 []\T1/ptm/m/n/10 While []\T1/zi4/m/sl/10 silhouette() []\T1/ptm/m/n/10 is \T1/p tm/m/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][][]\T1/zi4/m/sl/10 partition[][ ][] []\T1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2698] [2699] [2700] [2701] [2702] [2703] [2704] [2705] Underfull \hbox (badness 10000) in paragraph at lines 4836--4838 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2706] [2707]) (./codetools-pkg.tex [2708] Chapter 21. [2709] [2710] [2711] [2712] [2713]) (./foreign-pkg.tex [2714] Chapter 22. Underfull \hbox (badness 10000) in paragraph at lines 33--37 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2715] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2716] [2717] [2718] [2719] [2720] [2721] [2722] Underfull \hbox (badness 2846) in paragraph at lines 502--511 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer-ent lev- Underfull \hbox (badness 5417) in paragraph at lines 502--511 \T1/ptm/m/n/10 els. For []\T1/zi4/m/sl/10 "append" []\T1/ptm/m/n/10 (the de-fau lt), the first orig-i-nal value la-bel is Underfull \hbox (badness 6001) in paragraph at lines 502--511 \T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/z i4/m/sl/10 paste0(label, [2723] Overfull \hbox (6.73795pt too wide) in paragraph at lines 620--620 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2724] [2725] [2726] Underfull \hbox (badness 10000) in paragraph at lines 808--809 [2727] Underfull \hbox (badness 10000) in paragraph at lines 865--869 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2728] [2729] Underfull \hbox (badness 10000) in paragraph at lines 986--988 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2730] [2731] [2732] [2733] Underfull \hbox (badness 10000) in paragraph at lines 1265--1271 []\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/zi4/m/sl/10 forei gn:::writeForeignStata[]\T1/ptm/m/n/10 , [2734] [2735]) (./lattice-pkg.tex [2736] Chapter 23. [2737] Underfull \hbox (badness 1484) in paragraph at lines 114--118 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/zi4/m/sl/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2738] [2739] [2740] Underfull \vbox (badness 10000) has occurred while \output is active [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] [2749] [2750] [2751] [2752] [2753] Underfull \hbox (badness 1062) in paragraph at lines 1395--1399 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2754] Underfull \vbox (badness 4805) has occurred while \output is active [2755] Underfull \hbox (badness 1803) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 Lattice[][][] []\T1/ptm/m/n/10 for an overview of the pac k-age, as well as [][][]\T1/zi4/m/sl/10 barchart.table[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.trellis[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 panel.superpose[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.loess[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.average[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/zi4/m/sl/10 strip.default[][][][]\T1/ptm/m/n/10 , [2756] [2757] Underfull \hbox (badness 3009) in paragraph at lines 1705--1707 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/zi4/m/sl/10 xyplot[ ][][][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2758] [2759] [2760] [2761] [2762] [2763] Underfull \hbox (badness 10000) in paragraph at lines 2137--2140 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fi ed, the value of [2764] [2765] [2766] [2767] [2768] [2769] [2770] [2771] Underfull \vbox (badness 10000) has occurred while \output is active [2772] [2773] Underfull \hbox (badness 2781) in paragraph at lines 2871--2873 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the []\T1/zi4/m/sl/10 co l.regions []\T1/ptm/m/n/10 ar-gu-ment in [2774] Underfull \hbox (badness 2486) in paragraph at lines 3021--3025 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2775] [2776] [2777] [2778] [2779] [2780] [2781] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel} ) has been already used, duplicate ignored \relax l.3506 \aliasA{parallel}{B\_08\_splom}{parallel} [2782] [2783] Underfull \hbox (badness 2368) in paragraph at lines 3644--3644 []\T1/zi4/m/sl/10 auto.key[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 prepanel[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 scales[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 strip[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 groups[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 x lab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/1 0 ylab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[]\T1/ptm/m/n/10 , [2784] [2785] [2786] [2787] [2788] Underfull \hbox (badness 5696) in paragraph at lines 3992--3996 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 by spec-i-fy-ing []\T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")[]\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2789] [2790] [2791] Underfull \hbox (badness 1389) in paragraph at lines 4175--4183 \T1/ptm/m/n/10 based on HCL palettes, but cus-tomiza-tion of the palettes is al -lowed. Ear-lier be-haviour [2792] Underfull \hbox (badness 1173) in paragraph at lines 4251--4255 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4278--4280 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2793] [2794] [2795] Underfull \hbox (badness 3492) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/zi4/m/sl/10 col []\T1/ptm/m/n /10 is used for com-po-nents []\T1/zi4/m/sl/10 "plot.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4503--4506 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 p lot.symbol[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 plot.polygon[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 and [2796] [2797] [2798] [2799] [2800] [2801] [2802] Underfull \vbox (badness 10000) has occurred while \output is active [2803] [2804] [2805] Underfull \hbox (badness 6157) in paragraph at lines 5232--5235 []\T1/zi4/m/sl/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gl es via rect-an-gles. []\T1/zi4/m/sl/10 print.shingle []\T1/ptm/m/n/10 and [2806] [2807] [2808] [2809] [2810] [2811] [2812] Underfull \hbox (badness 10000) in paragraph at lines 5684--5687 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5684--5687 []\T1/zi4/m/sl/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on th e left of pan-els us-ing [2813] [2814] [2815] [2816] [2817] Underfull \hbox (badness 4805) in paragraph at lines 6045--6049 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 For []\T1/zi4/m/sl/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , ex-tra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 6056--6063 []\T1/zi4/m/sl/10 panel.identify[]\T1/ptm/m/n/10 . For []\T1/zi4/m/sl/10 panel. identify[]\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 6056--6063 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For []\T1 /zi4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 trellis.switchFocus[]\T1/ptm/m/n/10 , th ese are used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 6056--6063 [][][]\T1/zi4/m/sl/10 lattice.options[][][][]\T1/ptm/m/n/10 ) for high-light-in g the cho-sen view-port if so re-quested. [2818] [2819] [2820] [2821] Underfull \hbox (badness 4242) in paragraph at lines 6356--6361 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6356--6361 \T1/ptm/m/n/10 ter []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 is used if t here is no group-ing vari-able, oth-er-wise [2822] [2823] Underfull \hbox (badness 2310) in paragraph at lines 6472--6477 []\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/zi4/m/sl/10 x []\T1/ptm/ m/n/10 for ev-ery level of []\T1/zi4/m/sl/10 y []\T1/ptm/m/n/10 (or the other w ay round if [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] Underfull \hbox (badness 3168) in paragraph at lines 7330--7334 []\T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. Use [2836] [2837] [2838] [2839] Underfull \hbox (badness 2012) in paragraph at lines 7601--7604 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2840] [2841] [2842] Underfull \hbox (badness 3333) in paragraph at lines 7808--7810 []\T1/ptm/m/n/10 default colours are ob-tained from []\T1/zi4/m/sl/10 plot.symb ol []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 plot.line []\T1/ptm/m/n/10 us-ing Underfull \hbox (badness 2318) in paragraph at lines 7836--7844 []\T1/zi4/m/sl/10 "spline" []\T1/ptm/m/n/10 adds a cu-bic smooth-ing spline fit (same as [][][]\T1/zi4/m/sl/10 panel.spline[][][][]\T1/ptm/m/n/10 ). [2843] [2844] [2845] [2846] [2847] [2848] [2849] Underfull \hbox (badness 1436) in paragraph at lines 8309--8315 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2850] [2851] [2852] [2853] [2854] [2855] [2856] [2857] Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/zi4/m/sl/10 panel.supe rpose []\T1/ptm/m/n/10 from Underfull \hbox (badness 1092) in paragraph at lines 8924--8926 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 ([]\T1/zi4/m/sl/10 panel.superpose.2 []\T1/ptm/m/n/10 orig-i-n ally con- [2858] [2859] [2860] Underfull \hbox (badness 3895) in paragraph at lines 9085--9088 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/zi4/m/sl/10 type []\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in Underfull \hbox (badness 6625) in paragraph at lines 9095--9095 []\T1/zi4/m/sl/10 perspective[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 distance[]\T1 /ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 zlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 scr een[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 R.mat[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/ 10 aspect[]\T1/ptm/m/n/10 , [2861] Underfull \hbox (badness 1515) in paragraph at lines 9160--9164 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2862] Underfull \hbox (badness 6316) in paragraph at lines 9266--9271 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2863] Underfull \hbox (badness 5908) in paragraph at lines 9283--9286 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by []\T1/zi4/m/sl/10 xscale .components.default []\T1/ptm/m/n/10 and [2864] [2865] [2866] [2867] Underfull \hbox (badness 2418) in paragraph at lines 9574--9578 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing []\T1/z i4/m/sl/10 left, right, left.name, right.name, [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 2310) in paragraph at lines 10018--10022 []\T1/ptm/m/n/10 Factor with lev-els []\T1/zi4/m/sl/10 "Svansota"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Manchuria "[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "No. 475"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "Velvet"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 10023--10026 []\T1/ptm/m/n/10 Factor with 6 lev-els: []\T1/zi4/m/sl/10 "Grand Rapids"[]\T1/p tm/m/n/10 , []\T1/zi4/m/sl/10 "Duluth"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Uni versity Farm"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Morris"[]\T1/ptm/m/n/10 , [2875] [2876] [2877] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma} ) has been already used, duplicate ignored \relax l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma} [2878] [2879] [2880] Underfull \hbox (badness 4144) in paragraph at lines 10473--10476 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10473--10476 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2881] [2882]) (./mgcv-pkg.tex Chapter 24. [2883] [2884] [2885] Underfull \hbox (badness 1142) in paragraph at lines 185--189 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 210--215 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2886] [2887] [2888] [2889] Underfull \hbox (badness 10000) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gamObject[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][] [][]predi ct.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.gam[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/ m/sl/10 gam.side[][][][]\T1/ptm/m/n/10 , [2890] [2891] [2892] [2893] [2894] [2895] Underfull \hbox (badness 1406) in paragraph at lines 704--705 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2896] [2897] Underfull \hbox (badness 1158) in paragraph at lines 814--816 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2898] Underfull \hbox (badness 1259) in paragraph at lines 877--878 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2899] Underfull \vbox (badness 10000) has occurred while \output is active [2900] [2901] [2902] [2903] [2904] [2905] Underfull \hbox (badness 1281) in paragraph at lines 1272--1273 []\T1/zi4/m/sl/10 deviance[]\T1/ptm/m/n/10 ,[]\T1/zi4/m/sl/10 martingale[]\T1/p tm/m/n/10 ,[]\T1/zi4/m/sl/10 score[]\T1/ptm/m/n/10 , or []\T1/zi4/m/sl/10 schoe nfeld []\T1/ptm/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2906] [2907] Underfull \vbox (badness 10000) has occurred while \output is active [2908] Underfull \vbox (badness 10000) has occurred while \output is active [2909] [2910] Underfull \vbox (badness 10000) has occurred while \output is active [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] Underfull \hbox (badness 1142) in paragraph at lines 2604--2608 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2929] Underfull \hbox (badness 1043) in paragraph at lines 2630--2636 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2930] [2931] [2932] [2933] [2934] [2935] Underfull \vbox (badness 10000) has occurred while \output is active [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] [2938] [2939] [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 []\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/zi4/m/sl/10 gam []\T1/pt m/m/n/10 mod-els us-ing []\T1/zi4/m/sl/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (see [2954] [2955] Underfull \vbox (badness 10000) has occurred while \output is active [2956] [2957] [2958] Underfull \hbox (badness 1184) in paragraph at lines 4358--4362 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] Underfull \hbox (badness 1142) in paragraph at lines 5081--5085 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2971] Underfull \hbox (badness 1231) in paragraph at lines 5185--5187 []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 per-forms poorly with bi-nary data, sin ce it uses PQL. It is bet-ter to use []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 wit h [2972] [2973] [2974] Underfull \vbox (badness 10000) has occurred while \output is active [2975] [2976] [2977] [2978] Underfull \hbox (badness 2181) in paragraph at lines 5626--5627 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] Underfull \hbox (badness 10000) in paragraph at lines 6130--6131 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/zi4/m/sl/10 gam(. ..,fit=FALSE) []\T1/ptm/m/n/10 or [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] Underfull \hbox (badness 1142) in paragraph at lines 6715--6719 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2999] [3000] [3001] Underfull \vbox (badness 10000) has occurred while \output is active [3002] [3003] [3004] [3005] Underfull \hbox (badness 1087) in paragraph at lines 7087--7088 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 rho []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/1 0 theta []\T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this case, and if [3006] [3007] [3008] Underfull \vbox (badness 10000) has occurred while \output is active [3009] Underfull \vbox (badness 10000) has occurred while \output is active [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] Underfull \hbox (badness 1242) in paragraph at lines 8046--8047 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [3022] Underfull \hbox (badness 1122) in paragraph at lines 8072--8073 []\T1/ptm/m/n/10 When us-ing [][][]\T1/zi4/m/sl/10 NCV[][][] []\T1/ptm/m/n/10 w ith [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 worth-while per-for-mance im-prove-ments are avail-able by set-ting [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] Underfull \hbox (badness 6001) in paragraph at lines 8785--8787 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] Underfull \vbox (badness 10000) has occurred while \output is active [3046] [3047] Underfull \hbox (badness 1038) in paragraph at lines 9533--9536 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/zi4/m/sl/10 Di m.pdIndot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 coef.pdIdnot[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9533--9536 []\T1/zi4/m/sl/10 logDet.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdConstruc t.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdIdnot[]\T1/ptm/m/n/10 , [3048] Underfull \hbox (badness 10000) in paragraph at lines 9589--9592 []\T1/ptm/m/n/10 These func-tions ([]\T1/zi4/m/sl/10 pdTens[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/sl/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFacto r.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] Underfull \hbox (badness 1852) in paragraph at lines 10261--10264 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3060] [3061] [3062] Underfull \hbox (badness 1852) in paragraph at lines 10430--10433 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3063] [3064] Underfull \vbox (badness 10000) has occurred while \output is active [3065] [3066] Underfull \hbox (badness 1205) in paragraph at lines 10670--10671 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10670--10671 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10676--10681 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3067] Underfull \hbox (badness 1205) in paragraph at lines 10760--10761 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10760--10761 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [3068] [3069] [3070] Underfull \hbox (badness 1253) in paragraph at lines 10959--10961 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [3071] [3072] [3073] [3074] [3075] [3076] Underfull \hbox (badness 4792) in paragraph at lines 11220--11223 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/zi4/m/s l/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/zi4/m/sl/10 gam[][][] []\ T1/ptm/m/n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 11220--11223 \T1/ptm/m/n/10 see [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 . If smooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [3077] Underfull \hbox (badness 10000) in paragraph at lines 11327--11330 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/zi4/m/sl /10 "deviance"[]\T1/ptm/m/n/10 , [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] Underfull \hbox (badness 3861) in paragraph at lines 12118--12121 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [3092] [3093] Underfull \hbox (badness 1320) in paragraph at lines 12233--12238 \T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 b.orig = D*b.repara []\T1/ptm/m/n/10 (wher e []\T1/zi4/m/sl/10 b.orig []\T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec- tor). If ma- [3094] Underfull \hbox (badness 1975) in paragraph at lines 12339--12344 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3095] [3096] Underfull \hbox (badness 1762) in paragraph at lines 12428--12440 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][][]\T1/zi4/m/sl/10 tprs[][][] []\T1/ptm/m/n/10 ); []\T1/zi4/m/sl/10 ts.smooth.spec []\T1/ptm/m/n/10 (thin pla te re-gres-sion splines with [3097] [3098] [3099] Underfull \hbox (badness 7667) in paragraph at lines 12640--12646 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of o ne or two vari-ables, spec-i-fied via terms like [3100] Underfull \hbox (badness 10000) in paragraph at lines 12681--12682 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3101] [3102] [3103] [3104] Underfull \vbox (badness 10000) has occurred while \output is active [3105] Underfull \hbox (badness 10000) in paragraph at lines 12958--12960 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3106] [3107] Underfull \hbox (badness 10000) in paragraph at lines 13088--13089 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3108] [3109] [3110] Underfull \hbox (badness 1436) in paragraph at lines 13224--13231 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 only al-lows one [3111] [3112] Underfull \hbox (badness 10000) in paragraph at lines 13323--13324 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] Underfull \hbox (badness 10000) in paragraph at lines 13924--13930 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13924--13930 []\T1/zi4/m/sl/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 for-mula. Note [3123] [3124] [3125] Underfull \vbox (badness 10000) has occurred while \output is active [3126] Underfull \vbox (badness 10000) has occurred while \output is active [3127] [3128] Underfull \hbox (badness 10000) in paragraph at lines 14268--14269 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3129] [3130] [3131] [3132] Overfull \hbox (35.26862pt too wide) in paragraph at lines 14480--14480 []\T1/zi4/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs ="sz",id=1),data=dat,method="REML")[] [3133] [3134] Underfull \hbox (badness 3895) in paragraph at lines 14626--14629 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of a ny num-ber of vari-ables, spec-i-fied via terms like [3135] Underfull \hbox (badness 10000) in paragraph at lines 14671--14673 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3136] [3137] [3138] [3139] [3140] Underfull \hbox (badness 1371) in paragraph at lines 14951--14957 []\T1/zi4/m/sl/10 bs="ad" []\T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-ti ve smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14962--14964 []\T1/zi4/m/sl/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see Underfull \hbox (badness 1132) in paragraph at lines 14962--14964 [][][]\T1/zi4/m/sl/10 smooth.construct.fs.smooth.spec[][][][]\T1/ptm/m/n/10 ) i s avail-able for the case in which a smooth is [3141] Underfull \hbox (badness 6461) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Duchon.spline[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cubic.regression.spline[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/sl/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4 /m/sl/10 d.spline[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 mrf[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 soap[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Spherical.Spline[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 adaptive.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][][]\T1/ptm/m/n/10 , [3142] [3143] [3144] [3145] Underfull \hbox (badness 2326) in paragraph at lines 15200--15207 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][][]\T1/zi4/m/sl/10 smooth.construct[][][] []\T1/ptm/m/n/10 and [3146] Underfull \hbox (badness 2158) in paragraph at lines 15285--15285 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3147] [3148] [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157] Underfull \vbox (badness 10000) has occurred while \output is active [3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] Overfull \hbox (21.42029pt too wide) in paragraph at lines 16847--16847 []\T1/zi4/m/sl/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL ,unconditional=FALSE, ...)[] [3172] [3173] [3174] Underfull \hbox (badness 1796) in paragraph at lines 16960--16963 []\T1/ptm/m/n/10 other op-tions to pass on to [][][]\T1/zi4/m/sl/10 persp[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 or [][][] \T1/zi4/m/sl/10 contour[][][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183]) (./nlme-pkg.tex [3184] Chapter 25. [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] Underfull \hbox (badness 10000) in paragraph at lines 2252--2258 [][][]\T1/zi4/m/sl/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cor ARMA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [3219] [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.corMatrix .corCompSymm}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.3186 ] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] Underfull \hbox (badness 1067) in paragraph at lines 4411--4416 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] Underfull \hbox (badness 10000) in paragraph at lines 5157--5161 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/sl/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 getCovariate.varFunc[][][][]\T1/ptm/m/n/10 , [3264] [3265] [3266] [3267] [3268] [3269] [3270] Underfull \hbox (badness 10000) in paragraph at lines 5591--5594 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGro ups.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroups.lmList[][][][]\ T1/ptm/m/n/10 , [3271] [3272] [3273] [3274] [3275] [3276] [3277] Underfull \hbox (badness 10000) in paragraph at lines 5972--5977 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 getGroupsFormula.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroupsFormula.lme[][][][]\T1/ptm/m/n/10 , [3278] [3279] [3280] [3281] Underfull \hbox (badness 1490) in paragraph at lines 6247--6258 [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsObject[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.gls[] [][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 qqnorm.gls[][][][]\T1/ptm/m/n/10 , [3282] Underfull \hbox (badness 10000) in paragraph at lines 6311--6313 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3283] [3284] [3285] [3286] [3287] [3288] Underfull \hbox (badness 10000) in paragraph at lines 6720--6722 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3289] [3290] [3291] [3292] Underfull \hbox (badness 10000) in paragraph at lines 6989--6996 [][][]\T1/zi4/m/sl/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gap ply[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gsummary[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plo t.nffGroupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.nfnGroupedD ata[][][][]\T1/ptm/m/n/10 , [3293] [3294] [3295] [3296] Underfull \hbox (badness 10000) in paragraph at lines 7249--7254 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Initialize.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 In itialize.glsStruct[][][][]\T1/ptm/m/n/10 , [3297] [3298] [3299] [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] Underfull \hbox (badness 10000) in paragraph at lines 8531--8533 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3316] [3317] [3318] [3319] [3320] Underfull \hbox (badness 10000) in paragraph at lines 8816--8823 [][][]\T1/zi4/m/sl/10 lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lme.lmLi st[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.lmList[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 pooledSD[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 predict.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 residuals.lmLi st[][][][]\T1/ptm/m/n/10 , [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] Underfull \hbox (badness 10000) in paragraph at lines 9337--9344 [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/zi4/m/sl/10 gls[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik.corStruct[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik .lmList[][][][]\T1/ptm/m/n/10 , [3329] [3330] [3331] [3332] [3333] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9699 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix.1} ) has been already used, duplicate ignored \relax l.9699 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] [3342] [3343] [3344] [3345] Underfull \hbox (badness 1596) in paragraph at lines 10476--10502 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3346] [3347] Underfull \hbox (badness 1490) in paragraph at lines 10592--10598 [][][]\T1/zi4/m/sl/10 nlmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlme.nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlmeObject[][][][]\ T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 nlmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pdClasses [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 reStruct[][][][]\T1/ptm/m/n/10 , [3348] [3349] [3350] Underfull \hbox (badness 10000) in paragraph at lines 10833--10835 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3351] [3352] [3353] [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] Underfull \hbox (badness 1286) in paragraph at lines 13736--13743 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/zi4/m/ sl/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/zi4/m/sl/10 inner []\T1/ptm/m/n/1 0 or [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412] [3413] [3414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects}) has been already used, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects.1}) has been already used, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} [3415] [3416] [3417] [3418] [3419] [3420] [3421] [3422] [3423] [3424] [3425] [3426] Underfull \hbox (badness 1067) in paragraph at lines 15932--15937 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3427] [3428] [3429] [3430] Underfull \hbox (badness 1448) in paragraph at lines 16175--16184 \T1/ptm/m/n/10 Op-tions in-clude []\T1/zi4/m/sl/10 "response" []\T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] Underfull \hbox (badness 1728) in paragraph at lines 16878--16881 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3441] [3442] [3443] [3444] Underfull \hbox (badness 8056) in paragraph at lines 17212--17221 \T1/zi4/m/sl/10 Symmetry" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdCompSymm[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Diagonal" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl /10 pdDiag[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17212--17221 \T1/zi4/m/sl/10 an Identity" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdIdent[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite, Natural Underfull \hbox (badness 5756) in paragraph at lines 17212--17221 \T1/zi4/m/sl/10 Parametrization" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdNatur al[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite" []\T1/ptm/m/ n/10 for [3445] [3446] [3447] [3448] [3449] Underfull \hbox (badness 10000) in paragraph at lines 17534--17542 [][][]\T1/zi4/m/sl/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 var ConstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varConstProp[][][][]\T 1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varIdent[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varPower[][][][]\T1/ptm/m/n/10 , [3450] [3451] [3452] [3453] [3454] [3455] [3456] [3457] [3458] [3459] [3460] Underfull \hbox (badness 10000) in paragraph at lines 18244--18254 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram .corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corRatio[][][][ ]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18244--18254 [][][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Variogram.corSpher[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Vari ogram.default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.gls[][][] []\T1/ptm/m/n/10 , [3461] [3462] [3463] [3464] [3465] Underfull \hbox (badness 5036) in paragraph at lines 18568--18577 [][][]\T1/zi4/m/sl/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.default[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476] [3477] [3478]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom. 1}) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3479] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [3480] [3481] [3482] [3483] [3484] [3485] [3486]) (./rpart-pkg.tex Chapter 27. [3487] [3488] [3489] [3490] [3491] [3492] [3493] [3494] [3495] [3496] Underfull \hbox (badness 10000) in paragraph at lines 771--775 []\T1/ptm/m/n/10 Logical. If []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , adds to the la-bel Underfull \hbox (badness 1348) in paragraph at lines 771--775 \T1/zi4/m/sl/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method []\T1/zi4/m/sl/10 class[]\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 for [3497] [3498] [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515]) (./spatial-pkg.tex [3516] Chapter 28. [3517] [3518] [3519] [3520] [3521] [3522] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535]) (./survival-pkg.tex [3536] Chapter 29. [3537] [3538] [3539] [3540] Underfull \hbox (badness 6412) in paragraph at lines 284--286 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3541] [3542] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml.1}) h as been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} [3543] [3544] [3545] [3546] [3547] [3548] [3549] [3550] [3551] [3552] [3553] [3554] Underfull \hbox (badness 1097) in paragraph at lines 1205--1207 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3555] [3556] [3557] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h as been already used, duplicate ignored \relax l.1407 ...erapy for Stage B/C colon cancer}{colon} [3558] Underfull \hbox (badness 3679) in paragraph at lines 1455--1459 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by []\T1/zi4/m/sl/10 table(colon$nodes, [3559] [3560] [3561] [3562] [3563] [3564] [3565] [3566] [3567] [3568] Underfull \hbox (badness 3250) in paragraph at lines 2143--2158 \T1/ptm/m/n/10 ing guides and prepend []\T1/zi4/m/sl/10 survival:: []\T1/ptm/m/ n/10 onto ev-er-thing, in-clud-ing the spe-cial terms, e.g., Underfull \hbox (badness 10000) in paragraph at lines 2143--2158 []\T1/zi4/m/sl/10 survival::coxph(survival:Surv(time, status) ~ age + survival: :cluster(inst), [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576] [3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587] [3588] [3589] [3590] Underfull \hbox (badness 1389) in paragraph at lines 3663--3665 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3591] [3592] [3593] [3594] Overfull \hbox (467.89665pt too wide) in alignment at lines 3949--3949 [] [] [3595] [3596] [3597] [3598] [3599] [3600] [3601] [3602] [3603] [3604] [3605] [3606] [3607] [3608] [3609] [3610] [3611] [3612] [3613] [3614] [3615] [3616] [3617] [3618] [3619] [3620] Underfull \hbox (badness 5274) in paragraph at lines 5718--5720 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "summary.survfit"[]\T1/p tm/m/n/10 , which is the re-sult of the [3621] [3622] [3623] [3624] [3625] [3626] [3627] [3628] [3629] [3630] [3631] [3632] [3633] [3634] [3635] [3636] [3637] [3638] Underfull \hbox (badness 1281) in paragraph at lines 6986--6989 []\T1/ptm/m/n/10 type of resid-u-als, with choices of []\T1/zi4/m/sl/10 "respon se"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "deviance"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "dfbeta"[]\T1/ptm/m/n/10 , [3639] [3640] [3641] [3642] [3643] [3644] [3645] [3646] [3647] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.7569 ...ata from a soldering experiment}{solder} [3648] [3649] [3650] [3651] [3652] [3653] [3654] [3655] [3656] [3657] [3658] [3659] [3660] [3661] [3662] [3663] [3664] [3665] [3666] [3667] [3668] [3669] [3670] Underfull \hbox (badness 1038) in paragraph at lines 9202--9208 []\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre -dicted sur-vival [3671] [3672] [3673] [3674] [3675] Underfull \hbox (badness 10000) in paragraph at lines 9560--9565 [][][]\T1/zi4/m/sl/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 survfit.object [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][][]\T1/ptm/m/n/10 , [3676] [3677] [3678] [3679] [3680] Underfull \hbox (badness 4441) in paragraph at lines 9950--9960 []\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio n at the [3681] [3682] Underfull \hbox (badness 1490) in paragraph at lines 10125--10134 [][][]\T1/zi4/m/sl/10 survfit.coxph[][][] []\T1/ptm/m/n/10 for sur-vival curves from Cox mod-els, [][][]\T1/zi4/m/sl/10 survfit.object[][][] []\T1/ptm/m/n/10 for a de-scrip-tion Underfull \hbox (badness 2213) in paragraph at lines 10125--10134 \T1/ptm/m/n/10 of the com-po-nents of a surv-fit ob-ject, [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lines.survfit[][][][]\T1/ptm/m/n/10 , [3683] [3684] [3685] [3686] [3687] [3688] [3689] Underfull \hbox (badness 1354) in paragraph at lines 10623--10627 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3690] [3691] [3692] [3693] [3694] [3695] [3696] [3697] [3698] [3699] [3700] [3701] [3702] [3703] [3704] [3705] [3706] [3707] [3708] [3709] [3710] [3711] [3712] [3713]) [3714] (./fullrefman.ind [3715] [3716] [3717] [3718] [3719] [3720] [3721] [3722] [3723] [3724] [3725] [3726] [3727] [3728] [3729] [3730] [3731] [3732] [3733] [3734] [3735] [3736] [3737] [3738] [3739] [3740] [3741] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2898--2900 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3742] [3743] [3744] [3745] [3746] [3747] [3748] Overfull \hbox (8.3567pt too wide) in paragraph at lines 3550--3552 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3749] [3750] [3751] [3752] [3753] [3754] [3755] [3756] [3757] [3758] [3759] Overfull \hbox (5.8567pt too wide) in paragraph at lines 4955--4957 []\T1/zi4/m/it/10 [,Matrix,lMatrix,missing,missing-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 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wide) in paragraph at lines 5497--5499 []\T1/zi4/m/it/10 %&%,RsparseMatrix,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5499--5501 []\T1/zi4/m/it/10 %&%,RsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5503--5505 []\T1/zi4/m/it/10 %&%,RsparseMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5509--5511 []\T1/zi4/m/it/10 %&%,TsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5511--5513 []\T1/zi4/m/it/10 %&%,TsparseMatrix,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5513--5515 []\T1/zi4/m/it/10 %&%,TsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5517--5519 []\T1/zi4/m/it/10 %&%,TsparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5537--5539 []\T1/zi4/m/it/10 %&%,diagonalMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5539--5541 []\T1/zi4/m/it/10 %&%,diagonalMatrix,RsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5541--5543 []\T1/zi4/m/it/10 %&%,diagonalMatrix,TsparseMatrix-method [3764] Overfull \hbox (10.8567pt too wide) in paragraph at lines 5545--5547 []\T1/zi4/m/it/10 %&%,diagonalMatrix,diagonalMatrix-method [3765] Overfull \hbox (15.01662pt too wide) in paragraph at lines 5815--5817 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3766] Overfull \hbox (20.8567pt too wide) in paragraph at lines 5969--5971 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method [3767] Overfull \hbox (10.8567pt too wide) in paragraph at lines 6222--6224 []\T1/zi4/m/it/10 Arith,CsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 6230--6232 []\T1/zi4/m/it/10 Arith,ddenseMatrix,sparseVector-method [3768] Overfull \hbox (10.8567pt too wide) in paragraph at lines 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(15.01662pt too wide) in paragraph at lines 7031--7033 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3772] [3773] [3774] [3775] [3776] [3777] [3778] [3779] Overfull \hbox (30.8567pt too wide) in paragraph at lines 8535--8537 []\T1/zi4/m/it/10 coerce,diagonalMatrix,symmetricMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 8537--8539 []\T1/zi4/m/it/10 coerce,diagonalMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8557--8559 []\T1/zi4/m/it/10 coerce,generalMatrix,packedMatrix-method [3780] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8703--8705 []\T1/zi4/m/it/10 coerce,matrix.coo,CsparseMatrix-method [3781] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8711--8713 []\T1/zi4/m/it/10 coerce,matrix.coo,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8715--8717 []\T1/zi4/m/it/10 coerce,matrix.coo,TsparseMatrix-method Overfull 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coerce,sparseVector,TsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8787--8789 []\T1/zi4/m/it/10 coerce,sparseVector,unpackedMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8789--8791 []\T1/zi4/m/it/10 coerce,sparseVector,zsparseVector-method [3782] Overfull \hbox (20.8567pt too wide) in paragraph at lines 8963--8965 []\T1/zi4/m/it/10 Compare,CsparseMatrix,CsparseMatrix-method [3783] Overfull \hbox (40.8567pt too wide) in paragraph at lines 8995--8997 []\T1/zi4/m/it/10 Compare,triangularMatrix,diagonalMatrix-method [3784] [3785] Overfull \hbox (30.8567pt too wide) in paragraph at lines 9532--9534 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9534--9536 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,denseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9536--9538 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,diagonalMatrix-method Overfull \hbox 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crossprod,denseMatrix,TsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9564--9566 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,CsparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9566--9568 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,denseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 9568--9570 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9570--9572 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,matrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9572--9574 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,missing-method [3786] Overfull \hbox (35.8567pt too wide) in paragraph at lines 9574--9576 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,RsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9576--9578 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,TsparseMatrix-method Overfull \hbox (0.8567pt too wide) 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crossprod,vector,diagonalMatrix-method [3787] Overfull \hbox (15.01662pt too wide) in paragraph at lines 9711--9713 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9775--9777 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9780--9782 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9789--9791 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3788] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10150--10152 []\T1/zi4/m/it/10 determinant,BunchKaufman,logical-method [3789] Overfull \hbox (15.8567pt too wide) in paragraph at lines 10166--10168 []\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 10188--10190 []\T1/zi4/m/it/10 determinant,MatrixFactorization,missing-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 10190--10192 []\T1/zi4/m/it/10 determinant,pBunchKaufman,logical-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 10202--10204 []\T1/zi4/m/it/10 determinant,triangularMatrix,logical-method [3790] [3791] Overfull \hbox (20.8567pt too wide) in paragraph at lines 10580--10582 []\T1/zi4/m/it/10 dimnames<-,MatrixFactorization,list-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 10582--10584 []\T1/zi4/m/it/10 dimnames<-,MatrixFactorization,NULL-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 10584--10586 []\T1/zi4/m/it/10 dimnames<-,symmetricMatrix,list-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 10586--10588 []\T1/zi4/m/it/10 dimnames<-,symmetricMatrix,NULL-method [3792] Overfull \hbox (15.01662pt too wide) in paragraph at lines 10935--10937 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3793] [3794] [3795] [3796] [3797] Overfull \hbox (35.8567pt too wide) in paragraph at lines 11910--11912 []\T1/zi4/m/it/10 forceSymmetric,CsparseMatrix,character-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 11912--11914 []\T1/zi4/m/it/10 forceSymmetric,CsparseMatrix,missing-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 11914--11916 []\T1/zi4/m/it/10 forceSymmetric,denseMatrix,character-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 11916--11918 []\T1/zi4/m/it/10 forceSymmetric,denseMatrix,missing-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 11918--11920 []\T1/zi4/m/it/10 forceSymmetric,diagonalMatrix,character-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 11920--11922 []\T1/zi4/m/it/10 forceSymmetric,diagonalMatrix,missing-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 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Transcript written on fullrefman.log. This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024/Mageia) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-02-20> (/usr/share/texmf-dist/tex/latex/base/book.cls Document Class: book 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texmf-dist/tex/latex/url/url.sty) (/usr/share/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 2875) in paragraph at lines 9327--9339 []\T1/zi4/m/n/10 NA[]\T1/ptm/m/n/10 , and hence []\T1/zi4/m/n/10 as.POSIXct("19 69-12-31 23:59:59", tz = "UTC") []\T1/ptm/m/n/10 will give []\T1/zi4/m/n/10 "19 69-12-31 [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] Underfull \hbox (badness 1178) in paragraph at lines 10193--10197 []\T1/ptm/m/n/10 If true, [][][]\T1/zi4/m/n/10 list[][][][]\T1/ptm/m/n/10 s and atomic vec-tors with non-[][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 names (see [][][]\T1/zi4/m/n/10 names[][][][]\T1/ptm/m/n/10 ) are de- [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] [176] [177] [178] [179] [180] Underfull \hbox (badness 2744) in paragraph at lines 12533--12535 []\T1/ptm/m/n/10 Changing the cur-rent en-cod-ing from a run-ning R ses-sion ma y lead to con-fu-sion (see [181] [182] [183] [184] [185] [186] [187] Underfull \vbox (badness 10000) has occurred while \output is active [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \hbox (badness 2253) in paragraph at lines 14737--14739 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see Underfull \hbox (badness 1490) in paragraph at lines 14772--14775 []\T1/ptm/m/n/10 Junction points and sym-bolic links are fol-lowed, so in-for-m a-tion is given about the [211] Underfull \hbox (badness 1565) in paragraph at lines 14854--14858 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] []\T1/ptm/m/n/10 to find out about sym- bolic links, [][][]\T1/zi4/m/n/10 files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 file.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 list.files[][][] []\T1/ptm/m/n/10 , and [212] Underfull \hbox (badness 4927) in paragraph at lines 14905--14907 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as []\T1/zi4 /m/n/10 PATH []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 R_LIBS []\T1/ptm/m/n/10 with []\T1/zi4/m/n/10 fsep = [213] [214] Underfull \hbox (badness 1466) in paragraph at lines 15056--15059 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For []\T 1/zi4/m/n/10 file.copy []\T1/ptm/m/n/10 and [215] Underfull \vbox (badness 1418) has occurred while \output is active [216] Underfull \hbox (badness 10000) in paragraph at lines 15187--15191 [][][]\T1/zi4/m/n/10 file.info[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 fil e.access[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 file.path[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/n/10 file.show[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m /n/10 list.files[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 unlink[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/n/10 basename[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 15198--15201 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [217] [218] [219] [220] Underfull \hbox (badness 3965) in paragraph at lines 15493--15497 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [221] [222] [223] [224] [225] [226] [227] [228] Underfull \hbox (badness 5260) in paragraph at lines 15995--15995 []\T1/zi4/m/n/10 big.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 big.interval[]\T1/ ptm/m/n/10 , []\T1/zi4/m/n/10 small.mark[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 sma ll.interval[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 decimal.mark[]\T1/ptm/m/n/10 , [229] [230] [231] [232] Underfull \hbox (badness 4429) in paragraph at lines 16285--16288 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] []\T1/zi4/m/n/10 complex[][][] []\T1/ptm/m/n/10 only for [233] Underfull \hbox (badness 10000) in paragraph at lines 16392--16394 []\T1/ptm/m/n/10 This works via []\T1/zi4/m/n/10 prettyNum()[]\T1/ptm/m/n/10 , which calls []\T1/zi4/m/n/10 .format.zeros(*, [234] Underfull \hbox (badness 2035) in paragraph at lines 16465--16469 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/n/10 decimal.mark []\T1/ptm/m/n/1 0 in []\T1/zi4/m/n/10 formatC() []\T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.2.0: for use within [235] [236] [237] [238] [239] [240] [241] [242] [243] [244] Underfull \hbox (badness 2452) in paragraph at lines 17088--17092 []\T1/zi4/m/n/10 gctorture2 []\T1/ptm/m/n/10 can also be in-voked via en-vi-ron -ment vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 17088--17092 \T1/ptm/m/n/10 sion. []\T1/zi4/m/n/10 R_GCTORTURE []\T1/ptm/m/n/10 cor-re-spond s to the []\T1/zi4/m/n/10 step []\T1/ptm/m/n/10 ar-gu-ment, []\T1/zi4/m/n/10 R_ GCTORTURE_WAIT []\T1/ptm/m/n/10 to []\T1/zi4/m/n/10 wait[]\T1/ptm/m/n/10 , and [245] [246] Underfull \hbox (badness 1092) in paragraph at lines 17262--17267 [][][]\T1/zi4/m/n/10 library.dynam[][][][]\T1/ptm/m/n/10 , or can be found af-t er the DLL has been loaded us-ing [247] [248] [249] [250] Underfull \hbox (badness 6741) in paragraph at lines 17515--17519 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing [ ]\T1/zi4/m/n/10 CRoutine[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 CallRoutine[]\T1/pt m/m/n/10 , [251] [252] [253] Underfull \vbox (badness 10000) has occurred while \output is active [254] [255] [256] [257] [258] [259] [260] Underfull \vbox (badness 10000) has occurred while \output is active [261] Underfull \vbox (badness 10000) has occurred while \output is active [262] [263] [264] [265] [266] [267] [268] [269] [270] [271] Underfull \hbox (badness 1769) in paragraph at lines 18988--18991 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [272] [273] [274] [275] Underfull \hbox (badness 10000) in paragraph at lines 19297--19299 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / Underfull \hbox (badness 2088) in paragraph at lines 19303--19312 []\T1/ptm/m/n/10 For the spec-i-fi-ca-tions of `real' ICU lo-cales, see [][]$\T 1/zi4/m/n/10 https : / / unicode-[]org . github . io / icu / [276] [277] [278] [279] [280] [281] [282] [283] [284] Underfull \hbox (badness 1442) in paragraph at lines 19911--19913 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][][]\T1/zi4/m/n/10 dev.new[][][][]\T1/ptm/m/n/10 : see [285] Underfull \hbox (badness 2452) in paragraph at lines 20007--20033 [][][]\T1/zi4/m/n/10 as.character[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.complex[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.double[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/n/10 as.integer[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/n/10 as.logical[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.raw[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.vector[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 5726) in paragraph at lines 20007--20033 [][][]\T1/zi4/m/n/10 as.call[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 as.en vironment[][][] [][]is.array[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.ma trix[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.na[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 anyNA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.nan [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/n/10 is.finite[][][] [286] [287] [288] [289] [290] [291] Underfull \hbox (badness 1248) in paragraph at lines 20405--20408 []\T1/zi4/m/n/10 is.atomic []\T1/ptm/m/n/10 is true for the [][]atomic[][][] ty pes ([]\T1/zi4/m/n/10 "logical"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "integer"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "numeric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 " complex"[]\T1/ptm/m/n/10 , [292] [293] [294] [295] Underfull \hbox (badness 4739) in paragraph at lines 20672--20674 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [296] [297] [298] [299] [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] [312] Underfull \hbox (badness 2469) in paragraph at lines 21830--21835 []\T1/ptm/m/n/10 In late 2017 a []\T1/zi4/m/n/10 libcurl []\T1/ptm/m/n/10 in-st al-la-tion was seen di-vided into two li-braries, []\T1/zi4/m/n/10 libcurl []\T 1/ptm/m/n/10 and [313] Underfull \hbox (badness 1675) in paragraph at lines 21917--21926 []\T1/ptm/m/n/10 At startup, the li-brary search path is ini-tial-ized from the en-vi-ron-ment vari-ables []\T1/zi4/m/n/10 R_LIBS[]\T1/ptm/m/n/10 , [314] Underfull \hbox (badness 3189) in paragraph at lines 21927--21940 []\T1/ptm/m/n/10 First, []\T1/zi4/m/n/10 .Library.site []\T1/ptm/m/n/10 is ini- tial-ized from []\T1/zi4/m/n/10 R_LIBS_SITE[]\T1/ptm/m/n/10 . If this is un-set or empty, the Underfull \hbox (badness 10000) in paragraph at lines 21975--21978 []\T1/zi4/m/n/10 LOCALAPPDATA []\T1/ptm/m/n/10 (usu-ally []\T1/zi4/m/n/10 C:\Us ers\username\AppData\Local[]\T1/ptm/m/n/10 ) on Win-dows is a hid- Underfull \hbox (badness 4752) in paragraph at lines 21975--21978 \T1/ptm/m/n/10 den di-rec-tory and may not be viewed by some soft-ware. It may be opened by [315] [316] Underfull \hbox (badness 1014) in paragraph at lines 22109--22114 []\T1/ptm/m/n/10 Normally []\T1/zi4/m/n/10 library []\T1/ptm/m/n/10 re-turns (i n-vis-i-bly) the list of at-tached pack-ages, but []\T1/zi4/m/n/10 TRUE []\T1/p tm/m/n/10 or []\T1/zi4/m/n/10 FALSE []\T1/ptm/m/n/10 if [317] [318] [319] [320] [321] [322] [323] [324] [325] [326] [327] [328] Underfull \hbox (badness 1264) in paragraph at lines 22956--22964 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: [329] Underfull \hbox (badness 4441) in paragraph at lines 22991--22994 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory []\T1/zi4/m/n/10 "LC_ALL" []\T1/ ptm/m/n/10 sets only cat-e-gories []\T1/zi4/m/n/10 "LC_COLLATE"[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 "LC_CTYPE"[]\T1/ptm/m/n/10 , [330] [331] [332] [333] [334] [335] [336] [337] [338] [339] [340] Underfull \hbox (badness 5231) in paragraph at lines 23809--23811 []\T1/ptm/m/n/10 The al-go-rithm used by []\T1/zi4/m/n/10 make.unique []\T1/ptm /m/n/10 has the prop-erty that []\T1/zi4/m/n/10 make.unique(c(A, B)) == [341] [342] [343] [344] [345] [346] [347] [348] [349] [350] [351] [352] [353] [354] [355] [356] [357] Underfull \hbox (badness 6380) in paragraph at lines 24919--24925 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Data _ compress ion$[][] \T1/ptm/m/n/10 for back-ground on data com-pres- Underfull \hbox (badness 1472) in paragraph at lines 24919--24925 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / XZ _ Utils$[][] [358] [359] [360] [361] [362] [363] [364] [365] Underfull \hbox (badness 2790) in paragraph at lines 25432--25435 []\T1/zi4/m/n/10 packageStartupMessage []\T1/ptm/m/n/10 is a vari-ant whose mes -sages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 25432--25435 []\T1/zi4/m/n/10 suppressPackageStartupMessages[]\T1/ptm/m/n/10 . (They are sti ll mes-sages, so can be sup-pressed by [366] [367] [368] [369] Underfull \hbox (badness 1194) in paragraph at lines 25760--25763 []\T1/ptm/m/n/10 The de-fault method for []\T1/zi4/m/n/10 anyNA []\T1/ptm/m/n/1 0 han-dles atomic vec-tors with-out a class and []\T1/zi4/m/n/10 NULL[]\T1/ptm/ m/n/10 . It calls [370] [371] [372] Underfull \hbox (badness 2368) in paragraph at lines 25967--25973 []\T1/ptm/m/n/10 For an [][][]\T1/zi4/m/n/10 environment[][][] env[]\T1/ptm/m/n /10 , []\T1/zi4/m/n/10 names(env) []\T1/ptm/m/n/10 gives the names of the cor-r e-spond-ing list, i.e., [373] [374] [375] [376] [377] [378] Underfull \hbox (badness 10000) in paragraph at lines 26357--26360 []\T1/ptm/m/n/10 optional [][][]\T1/zi4/m/n/10 logical[][][] []\T1/ptm/m/n/10 e ven-tu-ally to be passed to []\T1/zi4/m/n/10 print()[]\T1/ptm/m/n/10 , used by [379] [380] [381] [382] [383] [384] [385] [386] [387] Underfull \hbox (badness 10000) in paragraph at lines 26985--26987 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) []\T1/ptm/m/n/10 is equiv-a-lent to but more ef-fi-cient than []\T1/zi4/m/n/10 pkg %in% [388] [389] [390] [391] [392] [393] [394] Underfull \hbox (badness 2443) in paragraph at lines 27476--27484 \T1/ptm/m/n/10 suit-able char-ac-ter vec-tors as above, or nu-meric ver-sion ob -jects. For [395] [396] [397] [398] [399] [400] Underfull \hbox (badness 1881) in paragraph at lines 27906--27909 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are [401] Underfull \hbox (badness 6220) in paragraph at lines 27931--27933 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [402] Underfull \hbox (badness 2142) in paragraph at lines 28072--28076 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][][]\T1/zi4/m/n/10 posts cript[][][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able [403] Underfull \hbox (badness 1968) in paragraph at lines 28129--28134 []\T1/ptm/m/n/10 the com-mand used by [][][]\T1/zi4/m/n/10 postscript[][][] []\ T1/ptm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [404] [405] [406] Underfull \hbox (badness 10000) in paragraph at lines 28425--28431 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][][]\T1/zi4/ m/n/10 setRepositories[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 28425--28431 \T1/ptm/m/n/10 e.g. the de-fault `[]\T1/zi4/m/n/10 "https://bioconductor.org"[] \T1/ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 28425--28431 \T1/ptm/m/n/10 `[]\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de "[]\T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 5878) in paragraph at lines 28438--28441 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][][]\T1/zi4/m/n/10 create.post[ ][][] []\T1/ptm/m/n/10 (and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T1/p tm/m/n/10 and Underfull \hbox (badness 2689) in paragraph at lines 28464--28466 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see [407] Underfull \hbox (badness 10000) in paragraph at lines 28510--28515 []\T1/ptm/m/n/10 Used by [][][]\T1/zi4/m/n/10 install.packages[][][] []\T1/ptm/ m/n/10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 28516--28527 \T1/ptm/m/n/10 in-di-rectly [][][]\T1/zi4/m/n/10 update.packages[][][][]\T1/ptm /m/n/10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 28516--28527 \T1/ptm/m/n/10 ble val-ues are []\T1/zi4/m/n/10 "never"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/n/10 "interactive" []\T1/ptm/m/n/10 (which means ask in in-ter-ac-tive u se and Underfull \hbox (badness 7203) in paragraph at lines 28528--28531 []\T1/ptm/m/n/10 default email-ing method used by [][][]\T1/zi4/m/n/10 create.p ost[][][] []\T1/ptm/m/n/10 and hence [][][]\T1/zi4/m/n/10 bug.report[][][] []\T 1/ptm/m/n/10 and [408] [409] [410] [411] [412] Underfull \hbox (badness 10000) in paragraph at lines 28946--28950 \T1/ptm/m/n/10 el-e-ment []\T1/zi4/m/n/10 A[c(arrayindex.x, arrayindex.y)] = FU N(X[arrayindex.x], Y[arrayindex.y], [413] [414] Underfull \hbox (badness 10000) in paragraph at lines 29093--29096 []\T1/zi4/m/n/10 str2expression(s) []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 str2la ng(s) []\T1/ptm/m/n/10 re-turn spe-cial ver-sions of []\T1/zi4/m/n/10 parse(tex t=s, [415] [416] Underfull \hbox (badness 7925) in paragraph at lines 29174--29178 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 ve c-tor []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2expression(s) [ ]\T1/ptm/m/n/10 cor-re-sponds to Underfull \hbox (badness 1253) in paragraph at lines 29174--29178 [][][]\T1/zi4/m/n/10 parse[][][](text = s, keep.source=FALSE)[]\T1/ptm/m/n/10 , which is al-ways of type ([][][]\T1/zi4/m/n/10 typeof[][][][]\T1/ptm/m/n/10 ) and [][][]\T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 2521) in paragraph at lines 29179--29188 []\T1/ptm/m/n/10 for a [][][]\T1/zi4/m/n/10 character[][][] []\T1/ptm/m/n/10 st ring []\T1/zi4/m/n/10 s[]\T1/ptm/m/n/10 , []\T1/zi4/m/n/10 str2lang(s) []\T1/pt m/m/n/10 cor-re-sponds to [][][]\T1/zi4/m/n/10 parse[][][](text = s, [417] [418] [419] [420] [421] [422] [423] [424] [425] [426] [427] [428] [429] [430] Underfull \hbox (badness 2726) in paragraph at lines 30193--30196 []\T1/ptm/m/n/10 character string (or []\T1/zi4/m/n/10 NULL[]\T1/ptm/m/n/10 ) i n-di-cat-ing [][][]\T1/zi4/m/n/10 NA[][][] []\T1/ptm/m/n/10 val-ues in printed out-put, see [431] [432] [433] [434] [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] Underfull \vbox (badness 10000) has occurred while \output is active [449] [450] [451] [452] [453] [454] [455] [456] Underfull \hbox (badness 1533) in paragraph at lines 32001--32004 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [457] [458] [459] Underfull \hbox (badness 1163) in paragraph at lines 32172--32183 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no []\T1/zi4/m/n/10 N A[]\T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [460] [461] [462] [463] [464] [465] [466] [467] Underfull \hbox (badness 6300) in paragraph at lines 32718--32720 []\T1/ptm/m/n/10 The sec-tion `Pro-cess-ing doc-u-men-ta-tion files' in the `Wr it-ing R Ex-ten-sions' man-ual: [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] [483] Underfull \hbox (badness 10000) in paragraph at lines 33841--33845 []\T1/zi4/m/n/10 regexpr []\T1/ptm/m/n/10 and []\T1/zi4/m/n/10 gregexpr []\T1/p tm/m/n/10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 33841--33845 []\T1/zi4/m/n/10 "(?[A-Z][a-z]+)" []\T1/ptm/m/n/10 then the po-si-tions of the matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 33862--33864 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 33865--33869 []\T1/ptm/m/n/10 The []\T1/zi4/m/n/10 pcre2pattern []\T1/ptm/m/n/10 or []\T1/zi 4/m/n/10 pcrepattern man []\T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m /n/10 https : / / www . pcre . org / [484] [485] [486] [487] [488] [489] [490] [491] [492] Underfull \hbox (badness 1655) in paragraph at lines 34467--34469 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for []\T1/zi4/m/n/10 rle()[]\T1 /ptm/m/n/10 ; an ob-ject of class []\T1/zi4/m/n/10 "rle" []\T1/ptm/m/n/10 for [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] Underfull \hbox (badness 2261) in paragraph at lines 35670--35675 []\T1/ptm/m/n/10 If []\T1/zi4/m/n/10 strip.white []\T1/ptm/m/n/10 is of length 1, it ap-plies to all fields; oth-er-wise, if [511] [512] [513] [514] [515] [516] [517] [518] [519] [520] [521] [522] [523] [524] Underfull \hbox (badness 3668) in paragraph at lines 36705--36709 []\T1/zi4/m/n/10 getAllConnections []\T1/ptm/m/n/10 re-turns a se-quence of in- te-ger con-nec-tion de-scrip-tors for use with [525] Underfull \hbox (badness 10000) in paragraph at lines 36796--36807 \T1/zi4/m/n/10 / / learn . microsoft . com / en-[]us / cpp / c-[]language / par sing-[]c-[]command-[]line-[]arguments ? [526] [527] [528] [529] [530] [531] [532] [533] [534] [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] Underfull \hbox (badness 10000) in paragraph at lines 38428--38430 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [550] [551] [552] [553] [554] Underfull \hbox (badness 2913) in paragraph at lines 38846--38850 \T1/ptm/m/n/10 ber of nested \T1/phv/m/n/10 R \T1/ptm/m/n/10 ex-pres-sions cur- rently un-der eval-u-a-tion, ex-ceeds the limit set by [555] [556] [557] [558] Underfull \hbox (badness 1072) in paragraph at lines 39092--39096 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 39097--39101 []\T1/ptm/m/n/10 The command-line op-tion `[]\T1/zi4/m/n/10 --vanilla[]\T1/ptm/ m/n/10 ' im-plies `[]\T1/zi4/m/n/10 --no-site-file[]\T1/ptm/m/n/10 ', `[]\T1/zi 4/m/n/10 --no-init-file[]\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 39137--39143 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 39137--39143 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 39137--39143 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 39152--39159 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 39152--39159 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 39152--39159 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 39152--39159 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [559] [560] [561] [562] Underfull \hbox (badness 2644) in paragraph at lines 39387--39391 []\T1/ptm/m/n/10 alternative to []\T1/zi4/m/n/10 exprs []\T1/ptm/m/n/10 or []\T 1/zi4/m/n/10 ...[]\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [563] [564] [565] [566] [567] [568] [569] [570] [571] [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] Underfull \hbox (badness 1158) in paragraph at lines 40915--40917 []\T1/ptm/m/n/10 integer code used in []\T1/zi4/m/n/10 quantile(*, type=quantil e.type) []\T1/ptm/m/n/10 for the de-fault [585] [586] [587] [588] [589] [590] [591] [592] [593] Underfull \hbox (badness 1137) in paragraph at lines 41515--41521 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 41533--41538 []\T1/ptm/m/n/10 If a file-name starts with []\T1/zi4/m/n/10 . []\T1/ptm/m/n/10 this may need to be matched ex-plic-itly: for ex-am-ple [594] [595] Underfull \hbox (badness 1616) in paragraph at lines 41653--41658 []\T1/zi4/m/n/10 system("id") []\T1/ptm/m/n/10 is much more portable on Unix-al ikes, pro-vided only the POSIX op-tions [596] [597] [598] [599] [600] [601] [602] [603] Underfull \hbox (badness 1472) in paragraph at lines 42199--42202 []\T1/ptm/m/n/10 logical. If []\T1/zi4/m/n/10 TRUE[]\T1/ptm/m/n/10 , func-tions keep their source in-clud-ing com-ments, see [604] [605] [606] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/n' instead on input line 42411. [607] [608] [609] [610] [611] [612] [613] [614] [615] [616] Underfull \vbox (badness 10000) has occurred while \output is active [617] Underfull \hbox (badness 10000) in paragraph at lines 43150--43154 []\T1/ptm/m/n/10 On 64-bit plat-forms []\T1/zi4/m/sl/10 bin []\T1/ptm/m/n/10 ca n have $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., []\T1/zi4 /m/sl/10 length(bin) > [618] [619] [620] [621] [622] Underfull \hbox (badness 10000) in paragraph at lines 43509--43512 [][][]\T1/zi4/m/sl/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [][]$https : / / developer . r-[]project . org / [623] [624] [625] Underfull \hbox (badness 10000) in paragraph at lines 43693--43697 [][][]\T1/zi4/m/sl/10 addTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 removeTaskCallback[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 taskCallb ackManager[][][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/sl/10 https : / / developer . [626] [627] [628] [629] [630] [631] [632] [633] [634] Underfull \hbox (badness 10000) in paragraph at lines 44341--44344 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Time _ zone$[] [] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/sl/10 https : / / data . iana . org / time -[]zones / [635] [636] [637] [638] [639] [640] [641] [642] [643] [644] [645] [646] [647] Underfull \hbox (badness 1990) in paragraph at lines 45257--45265 []\T1/zi4/m/sl/10 try []\T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps an y er-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 45257--45265 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ][]\T1/zi4/m/sl/10 stderr[][][] []\T1/ptm/m/n/10 con-nec-tion un-less [648] [649] [650] [651] [652] [653] [654] [655] [656] [657] [658] [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1014) in paragraph at lines 46694--46697 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the warn-ing should be out-put im-me -di-ately, even if [669] Underfull \hbox (badness 2401) in paragraph at lines 46827--46831 []\T1/ptm/m/n/10 See the de-scrip-tion of [][][]\T1/zi4/m/sl/10 options[][][](" warn") []\T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [670] [671] Underfull \hbox (badness 3492) in paragraph at lines 46953--46955 []\T1/zi4/m/sl/10 weekdays []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 months []\T1/ ptm/m/n/10 re-turn a char-ac-ter vec-tor of names in the lo-cale in use, i.e., [672] Underfull \hbox (badness 2111) in paragraph at lines 47039--47044 \T1/ptm/m/n/10 If [][][]\T1/zi4/m/sl/10 names[][][](.dimnames) []\T1/ptm/m/n/10 is not empty, these are used as col-umn names. [673] [674] [675] [676] Underfull \hbox (badness 4001) in paragraph at lines 47287--47289 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/sl/10 https : / / developer . [677] [678] [679] [680] [681] [682] Underfull \hbox (badness 5417) in paragraph at lines 47688--47692 []\T1/zi4/m/sl/10 .packages() []\T1/ptm/m/n/10 re-turns the names of the cur-re ntly at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [683] Underfull \hbox (badness 10000) in paragraph at lines 47749--47753 []\T1/zi4/m/sl/10 .standard_regexps []\T1/ptm/m/n/10 re-turns a list of `stan-d ard' reg-exps, in-clud-ing el-e-ments named [684]) (./compiler-pkg.tex Chapter 2. [685] [686] [687] [688]) (./datasets-pkg.tex Chapter 3. [689] [690] [691] [692] [693] [694] [695] [696] [697] [698] [699] [700] [701] [702] [703] Underfull \hbox (badness 1097) in paragraph at lines 1034--1038 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [704] [705] [706] [707] [708] [709] [710] [711] [712] [713] [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728] [729] [730] [731] [732] [733] [734] [735] [736] [737] [738] [739] [740] [741] [742] [743] Overfull \hbox (2.27475pt too wide) in paragraph at lines 3524--3524 []\T1/zi4/m/n/9 ## From https://pubs.usgs.gov/gip/Elevations-Distances/elvadis t.html#Geographic%20Centers[] [744] [745] [746] [747] [748] [749] [750] [751] [752] [753] [754] [755] [756] [757] [758] [759] [760] [761] [762] [763] [764]) (./grDevices-pkg.tex Chapter 4. [765] [766] [767] [768] Underfull \hbox (badness 2221) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, []\T1/zi4/m/sl/10 c(mi, ma, n.)[] \T1/ptm/m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 297--302 []\T1/ptm/m/n/10 Apart from that, [][][]\T1/zi4/m/sl/10 axisTicks[][][]() []\T1 /ptm/m/n/10 just calls the C func-tion []\T1/zi4/m/sl/10 CreateAtVector() []\T1 /ptm/m/n/10 in [769] [770] [771] [772] [773] [774] [775] [776] [777] Underfull \hbox (badness 1424) in paragraph at lines 899--901 [][][]\T1/zi4/m/sl/10 NA[][][] []\T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) a nd []\T1/zi4/m/sl/10 "NA" []\T1/ptm/m/n/10 mean trans-par-ent, which can also b e spec-i-fied as [778] [779] [780] [781] [782] [783] Underfull \hbox (badness 5175) in paragraph at lines 1227--1229 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [784] Underfull \hbox (badness 2512) in paragraph at lines 1346--1348 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/sl/10 https : / / web . ar chive . org / web / 20190613001950 / http : / / efg2 . com / [785] [786] [787] [788] [789] Underfull \hbox (badness 1490) in paragraph at lines 1646--1651 \T1/ptm/m/n/10 by [][][]\T1/zi4/m/sl/10 rasterImage[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 grid.raster[][][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues [] \T1/zi4/m/sl/10 "no"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "yes" []\T1/ptm/m/n/10 and Underfull \hbox (badness 3302) in paragraph at lines 1659--1663 []\T1/ptm/m/n/10 character: Does the de-vice sup-port pat-tern fills? One or mo re of [790] [791] [792] [793] [794] [795] Underfull \hbox (badness 1325) in paragraph at lines 2074--2084 []\T1/zi4/m/sl/10 "png48"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "pngmono"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "pnggray"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "png alpha"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp16"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "bmp16m" "bmp256"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "bmp32b"[]\T1/ptm /m/n/10 , [796] Underfull \hbox (badness 10000) in paragraph at lines 2186--2188 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [797] [798] [799] Underfull \hbox (badness 6758) in paragraph at lines 2374--2377 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [800] [801] [802] [803] [804] [805] [806] [807] [808] [809] [810] Underfull \hbox (badness 10000) in paragraph at lines 3130--3131 [811] [812] [813] [814] [815] [816] [817] [818] [819] [820] [821] [822] [823] [824] [825] Underfull \vbox (badness 10000) has occurred while \output is active [826] [827] [828] Underfull \hbox (badness 1418) in paragraph at lines 4407--4414 \T1/ptm/m/n/10 it is one of []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "H elvetica-Narrow"[]\T1/ptm/m/n/10 , [829] [830] [831] [832] [833] [834] [835] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.symbol}) has been already used, duplicate ignored \relax l.4872 \aliasA{symbol}{plotmath}{symbol} [836] [837] [838] [839] [840] [841] Underfull \hbox (badness 1584) in paragraph at lines 5265--5267 []\T1/ptm/m/n/10 For type []\T1/zi4/m/sl/10 "cairo"[]\T1/ptm/m/n/10 , the []\T1 /zi4/m/sl/10 symbolfamily []\T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 5269--5276 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [842] [843] [844] [845] Underfull \hbox (badness 1377) in paragraph at lines 5571--5576 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [846] Underfull \hbox (badness 1377) in paragraph at lines 5675--5680 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are [ ]\T1/zi4/m/sl/10 "rgb" []\T1/ptm/m/n/10 (which is RGB+gray) and [847] Underfull \hbox (badness 7344) in paragraph at lines 5744--5746 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [848] [849] Underfull \hbox (badness 2035) in paragraph at lines 5883--5892 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 \T1/ptm/m/n/10 vided: []\T1/zi4/m/sl/10 "AvantGarde"[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 "Bookman"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Courier"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "Helvetica"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Helveti ca-Narrow"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 5883--5892 []\T1/zi4/m/sl/10 "NewCenturySchoolbook"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "P alatino" []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 "Times"[]\T1/ptm/m/n/10 ; []\T1 /zi4/m/sl/10 "URWGothic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "URWBookman"[]\T1/ ptm/m/n/10 , [850] Underfull \hbox (badness 10000) in paragraph at lines 5950--5955 []\T1/zi4/m/sl/10 BousungEG-Light-GB []\T1/ptm/m/n/10 can be found at [][]$\T1/ zi4/m/sl/10 https : / / ftp . gnu . org / pub / non-[]gnu / [851] [852] Underfull \hbox (badness 1546) in paragraph at lines 6090--6098 []\T1/ptm/m/n/10 arguments []\T1/zi4/m/sl/10 onefile[]\T1/ptm/m/n/10 , []\T1/zi 4/m/sl/10 family[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 title[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 fonts[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 encoding[]\T1/ptm/m/n /10 , []\T1/zi4/m/sl/10 bg[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 fg[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 width[]\T1/ptm/m/n/10 , [853] [854] [855] [856] [857] [858] [859] Underfull \hbox (badness 6625) in paragraph at lines 6534--6537 []\T1/ptm/m/n/10 Murrell, P., Ooms, J., Al-laire, J.J. (2015), "Record-ing and Re-play-ing the Graph- [860] Underfull \hbox (badness 10000) in paragraph at lines 6638--6641 []\T1/zi4/m/sl/10 rgb2hsv []\T1/ptm/m/n/10 trans-forms col-ors from RGB space ( red/green/blue) into HSV space [861] [862] [863] [864] Overfull \hbox (9.73488pt too wide) in paragraph at lines 6875--6875 []\T1/zi4/m/n/9 ## but now, x in [-0.5, 20] -- "too far" ==> "wrap around" pro blem (without \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 continuous=TRUE\TS1/zi4/m/n/9 '\T1/ zi4/m/n/9 ):[] [865] [866] [867] [868] [869] [870] [871] [872] [873] Underfull \hbox (badness 1189) in paragraph at lines 7503--7505 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [874] Underfull \hbox (badness 10000) in paragraph at lines 7608--7610 []\T1/zi4/m/sl/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" []\T1/ptm/m/n/10 for C JK lan-guages and [875] [876] [877] [878] [879] Underfull \hbox (badness 3780) in paragraph at lines 7923--7929 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of []\T1/zi4/m/s l/10 "AvantGarde"[]\T1/ptm/m/n/10 , [880] [881] [882] [883] [884]) (./graphics-pkg.tex Chapter 5. [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] Overfull \hbox (12.71341pt too wide) in paragraph at lines 1037--1037 [] \T1/zi4/m/n/9 main = "barplot(Freq ~ Class + Survived, *)", ylab = " # {passengers}", legend.text = TRUE)[] Underfull \vbox (badness 10000) has occurred while \output is active [901] [902] [903] [904] [905] [906] Underfull \hbox (badness 4634) in paragraph at lines 1410--1413 [][][]\T1/zi4/m/sl/10 boxplot.default[][][] []\T1/ptm/m/n/10 which al-ready wor ks nowa-days with data.frames; [][][]\T1/zi4/m/sl/10 boxplot.formula[][][][]\T1 /ptm/m/n/10 , [907] [908] [909] [910] [911] [912] [913] [914] [915] [916] [917] [918] [919] [920] [921] Underfull \hbox (badness 1728) in paragraph at lines 2388--2390 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use []\T1/zi4/m/sl/10 "n" []\T1/ptm/m/n/10 to sup-press and see also [922] Underfull \hbox (badness 1009) in paragraph at lines 2481--2488 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [923] [924] [925] [926] [927] [928] [929] [930] [931] [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Underfull \vbox (badness 10000) has occurred while \output is active [945] [946] [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] Underfull \hbox (badness 3229) in paragraph at lines 4733--4738 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [957] [958] [959] [960] [961] Underfull \hbox (badness 1107) in paragraph at lines 5233--5239 []\T1/ptm/m/n/10 is []\T1/zi4/m/sl/10 par("cin")/par("pin") []\T1/ptm/m/n/10 sc aled to user co-or-di-nates. Note that []\T1/zi4/m/sl/10 c([][]strwidth[][][](c h), [962] Underfull \hbox (badness 10000) in paragraph at lines 5362--5365 [963] Underfull \hbox (badness 10000) in paragraph at lines 5423--5425 [964 ] [965 ] [966] [967] [968] [969] [970] [971] [972] [973] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.plot}) ha s been already used, duplicate ignored \relax l.6097 \aliasA{plot}{plot.default}{plot} [974] [975] [976] [977] [978] [979] [980] [981] [982] [983] [984] [985] [986] [987] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6997--6998 [][] [988 ] [989] [990] [991] [992] [993] [994] [995] [996] [997] [998] [999] [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] Underfull \hbox (badness 4954) in paragraph at lines 9109--9111 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color []\T1/zi4/m /sl/10 par(c("font.sub", Underfull \hbox (badness 1019) in paragraph at lines 9111--9113 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color []\T1/zi4/m/sl/10 pa r(c("font.lab", "cex.lab", [1020] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units}) h as been already used, duplicate ignored \relax l.9191 \HeaderA{units}{Graphical Units}{units} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.units.1}) has been already used, duplicate ignored \relax l.9191 \HeaderA{units}{Graphical Units}{units} [1021] [1022] [1023] [1024]) (./grid-pkg.tex Chapter 6. [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] Underfull \hbox (badness 2680) in paragraph at lines 551--554 []\T1/ptm/m/n/10 Note that []\T1/zi4/m/sl/10 preDrawDetails []\T1/ptm/m/n/10 an d []\T1/zi4/m/sl/10 postDrawDetails []\T1/ptm/m/n/10 are also called in the cal -cu-la-tion of [1034] [1035] [1036] [1037] [1038] [1039] [1040] [1041] [1042] Underfull \hbox (badness 4279) in paragraph at lines 1188--1197 [][][]\T1/ptm/m/n/10 Grid[][][], [][][]\T1/zi4/m/sl/10 pushViewport[][][][]\T1/ ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 popViewport[][][][]\T1/ptm/m/n/10 , [][][]\T 1/zi4/m/sl/10 downViewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 seekVi ewport[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 upViewport[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 unit[][][][]\T1/ptm/m/n/10 , [1043] Underfull \vbox (badness 10000) has occurred while \output is active [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] [1053] [1054] [1055] [1056] [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] Underfull \hbox (badness 10000) in paragraph at lines 3103--3105 []\T1/ptm/m/n/10 A func-tion that re-turns an affine trans-for-ma-tion ma-trix; see [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] [1086] [1087] Underfull \vbox (badness 10000) has occurred while \output is active [1088] [1089] [1090] [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] [1099] [1100] Underfull \hbox (badness 1067) in paragraph at lines 4842--4845 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1101] [1102] [1103] [1104] [1105] Underfull \hbox (badness 7256) in paragraph at lines 5193--5195 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1106] [1107] [1108] [1109] [1110] [1111] [1112] Underfull \hbox (badness 2142) in paragraph at lines 5647--5651 []\T1/ptm/m/n/10 ob-jects. For []\T1/zi4/m/sl/10 gridGTreeCoords []\T1/ptm/m/n/ 10 a list of ei-ther []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 or [1113] [1114] Underfull \hbox (badness 4699) in paragraph at lines 5729--5734 []\T1/ptm/m/n/10 Either a []\T1/zi4/m/sl/10 "GridGrobCoords" []\T1/ptm/m/n/10 o b-ject (a list of lists with com-po-nents []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 y[]\T1/ptm/m/n/10 ) or a [1115] [1116] [1117] [1118] [1119] [1120] [1121] [1122] [1123] [1124] [1125] [1126] [1127] [1128] [1129] [1130] [1131] [1132] [1133] [1134] [1135] [1136] [1137] [1138] [1139] [1140] [1141] [1142] [1143] [1144]) (./methods-pkg.tex Chapter 7. [1145] [1146] [1147] [1148] [1149] [1150] [1151] [1152] Underfull \vbox (badness 10000) has occurred while \output is active [1153] Underfull \vbox (badness 10000) has occurred while \output is active [1154] [1155] [1156] [1157] [1158] [1159] [1160] [1161] [1162] Underfull \hbox (badness 2237) in paragraph at lines 1384--1386 []\T1/ptm/m/n/10 The class []\T1/zi4/m/sl/10 "className" []\T1/ptm/m/n/10 ex-te nds []\T1/zi4/m/sl/10 "character" []\T1/ptm/m/n/10 and has a slot []\T1/zi4/m/s l/10 "package"[]\T1/ptm/m/n/10 , also of class [1163] [1164] [1165] [1166] [1167] [1168] [1169] [1170] Underfull \hbox (badness 10000) in paragraph at lines 1980--1985 []\T1/ptm/m/n/10 The ar-gu-ment to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/m/n /10 can be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1980--1985 \T1/ptm/m/n/10 file name is passed to []\T1/zi4/m/sl/10 insertSource []\T1/ptm/ m/n/10 it calls []\T1/zi4/m/sl/10 evalSource []\T1/ptm/m/n/10 to ob-tain the [1171] [1172] [1173] Underfull \hbox (badness 2213) in paragraph at lines 2212--2217 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use []\T1/zi4/m/sl/10 where = [1174] [1175] [1176] [1177] [1178] Underfull \hbox (badness 10000) in paragraph at lines 2572--2575 []\T1/ptm/m/n/10 As you might ex-pect [][][]\T1/zi4/m/sl/10 setGeneric[][][] [] \T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 setGroupGeneric[][][] []\T1/ptm/m/n/10 cre-ate ob-jects of class [1179] [1180] Underfull \hbox (badness 1132) in paragraph at lines 2712--2716 []\T1/ptm/m/n/10 In []\T1/zi4/m/sl/10 getGenerics[]\T1/ptm/m/n/10 , if []\T1/zi 4/m/sl/10 TRUE[]\T1/ptm/m/n/10 , the []\T1/zi4/m/sl/10 package []\T1/ptm/m/n/10 slot of the re-turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2744--2749 \T1/ptm/m/n/10 In ad-di-tion, []\T1/zi4/m/sl/10 removeGeneric []\T1/ptm/m/n/10 re-moves the func-tion it-self; []\T1/zi4/m/sl/10 removeMethods []\T1/ptm/m/n/1 0 re-stores the [1181] [1182] [1183] [1184] [1185] [1186] [1187] Underfull \hbox (badness 1102) in paragraph at lines 3301--3303 []\T1/zi4/m/sl/10 getPackageName []\T1/ptm/m/n/10 re-turns the character-string name of the pack-age (with-out the ex-tra-ne-ous [1188] [1189] [1190] [1191] [1192] Underfull \hbox (badness 10000) in paragraph at lines 3638--3647 []\T1/ptm/m/n/10 The [1193] [1194] Underfull \hbox (badness 10000) in paragraph at lines 3758--3759 [] \T1/zi4/m/sl/10 Pos <- setClass("Pos", slots = c(latitude = "numeric", longi tude = "numeric", [1195] Underfull \hbox (badness 10000) in paragraph at lines 3842--3843 []\T1/zi4/m/sl/10 Currency <- setClass("Currency", slots = c(unit = "character" ), contains = [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] Underfull \hbox (badness 1769) in paragraph at lines 4473--4479 []\T1/ptm/m/n/10 class [][][]\T1/zi4/m/sl/10 MethodsList[][][] []\T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4473--4479 []\T1/zi4/m/sl/10 MethodDefinition[]\T1/ptm/m/n/10 , or an ex-ten-sion. Class [ ][][]\T1/zi4/m/sl/10 MethodWithNext[][][] []\T1/ptm/m/n/10 for an ex-ten-sion u sed by [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] Underfull \vbox (badness 10000) has occurred while \output is active [1213] Underfull \vbox (badness 10000) has occurred while \output is active [1214] [1215] [1216] Underfull \hbox (badness 4036) in paragraph at lines 5438--5441 []\T1/ptm/m/n/10 Object of class []\T1/zi4/m/sl/10 "PossibleMethod" []\T1/ptm/m /n/10 the method to use in re-sponse to a [1217] Underfull \hbox (badness 3803) in paragraph at lines 5513--5515 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1218] [1219] [1220] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1221] [1222] [1223] [1224] [1225] [1226] [1227] [1228] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 []\T1/ptm/m/n/10 can be con-verted ex-plic-itly as []\T1/zi4/m/sl/10 externalRe fMethod(f)[]\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1229] [1230] [1231] [1232] Underfull \vbox (badness 10000) has occurred while \output is active [1233] [1234] [1235] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.S4}) has been already used, duplicate ignored \relax l.6972 \aliasA{S4}{S3Part}{S4} [1236] [1237] [1238] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Complex}) has been already used, duplicate ignored \relax l.7228 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Logic}) h as been already used, duplicate ignored \relax l.7230 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) ha s been already used, duplicate ignored \relax l.7231 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7233 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignored \relax l.7234 \aliasA{Summary}{S4groupGeneric}{Summary} [1239] Underfull \hbox (badness 2050) in paragraph at lines 7295--7299 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1240] [1241] Underfull \hbox (badness 1286) in paragraph at lines 7483--7485 []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 .selectSuperClasses() []\T1/ptm/m/n/10 o nly, a [][][]\T1/zi4/m/sl/10 list[][][] []\T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cally [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] [1251] [1252] [1253] [1254] [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268] [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] Underfull \hbox (badness 1158) in paragraph at lines 10490--10493 []\T1/ptm/m/n/10 Chambers, John M. (2009) \T1/ptm/m/it/10 Class In-her-i-tance in R [][]$\T1/zi4/m/sl/10 https : / / johnmchambers . su . domains / [1281] Underfull \hbox (badness 1852) in paragraph at lines 10568--10572 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1282] [1283] [1284] [1285]) (./parallel-pkg.tex [1286] Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `[]\T1/z i4/m/sl/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 Ecuyer-CMRG"[]\T1/ptm/m/n/10 ' [] []RNG[][][]: see [1287] [1288] [1289] [1290] Underfull \hbox (badness 1320) in paragraph at lines 300--303 []\T1/ptm/m/n/10 It has meth-ods to do so for Linux, ma-cOS, FreeBSD, OpenBSD, So-laris and Win-dows. [1291] [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] Underfull \hbox (badness 3386) in paragraph at lines 1400--1403 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by []\T1/zi4/m/sl/10 .Random.seed []\T1/ptm/m/n/10 when the [1307] [1308] [1309]) (./splines-pkg.tex [1310] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/sl/10 \T1/ptm /m/n/10 and William N. Ven-ables [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] [1320] [1321] [1322] [1323] [1324]) (./stats-pkg.tex Chapter 10. [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] [1334] [1335] [1336] [1337] Underfull \hbox (badness 1412) in paragraph at lines 901--903 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from []\T1/zi4/m/sl/10 lm []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 aov[]\T1/ptm/m/n/10 , or a for-mula fo r [1338] [1339] [1340] [1341] [1342] [1343] [1344] [1345] Underfull \hbox (badness 2503) in paragraph at lines 1389--1392 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1346] [1347] [1348] [1349] [1350] [1351] [1352] [1353] [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] Underfull \hbox (badness 2503) in paragraph at lines 3557--3560 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1377] [1378] Package amsmath Warning: Foreign command \atopwithdelims; (amsmath) \frac or \genfrac should be used instead (amsmath) on input line 3670. [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] Underfull \hbox (badness 3989) in paragraph at lines 4816--4823 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1396] [1397] [1398] [1399] [1400] [1401] [1402] [1403] [1404] Underfull \hbox (badness 2556) in paragraph at lines 5470--5473 []\T1/ptm/m/n/10 character; par-tially matched to []\T1/zi4/m/sl/10 "circular"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "open"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "filter"[]\T1/ptm/m/n/10 . For [1405] [1406] [1407] [1408] [1409] [1410] Underfull \hbox (badness 2503) in paragraph at lines 5882--5886 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] Underfull \hbox (badness 7081) in paragraph at lines 6674--6677 []\T1/ptm/m/n/10 Objects of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/10 c an be con-verted to class []\T1/zi4/m/sl/10 "dendrogram" []\T1/ptm/m/n/10 us-in g method Underfull \hbox (badness 10000) in paragraph at lines 6678--6680 []\T1/zi4/m/sl/10 rev.dendrogram []\T1/ptm/m/n/10 sim-ply re-turns the den-dro- gram []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with re-versed nodes, see also [1424] [1425] [1426] [1427] [1428] Underfull \vbox (badness 10000) has occurred while \output is active [1429] [1430] [1431] Underfull \vbox (badness 10000) has occurred while \output is active [1432] [1433] [1434] [1435] [1436] Underfull \hbox (badness 10000) in paragraph at lines 7574--7577 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][][] \T1/zi4/m/sl/10 dist[][][]()[]\T1/ptm/m/n/10 , the [1437] [1438] [1439] [1440] [1441] [1442] [1443] [1444] [1445] [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] [1455] [1456] Underfull \vbox (badness 10000) has occurred while \output is active [1457] [1458] [1459] [1460] [1461] Underfull \hbox (badness 2626) in paragraph at lines 9271--9274 []\T1/ptm/m/n/10 Either []\T1/zi4/m/sl/10 "convolution" []\T1/ptm/m/n/10 or []\ T1/zi4/m/sl/10 "recursive" []\T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1462] [1463] Underfull \hbox (badness 2503) in paragraph at lines 9378--9382 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] [1481] [1482] Underfull \hbox (badness 4518) in paragraph at lines 10733--10738 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1483] [1484] [1485] [1486] [1487] Underfull \hbox (badness 2142) in paragraph at lines 11095--11098 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 11114--11117 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 trace []\T1/ptm/m/n/10 is true, calls t o [][][]\T1/zi4/m/sl/10 cat[][][] []\T1/ptm/m/n/10 pro-duce the out-put for eac h IWLS it-er-a-tion. Hence, [1488] Underfull \hbox (badness 1708) in paragraph at lines 11176--11180 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1489] [1490] [1491] [1492] [1493] Underfull \hbox (badness 1694) in paragraph at lines 11572--11575 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1494] [1495] [1496] [1497] [1498] [1499] [1500] [1501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.hat}) has been already used, duplicate ignored \relax l.12053 \aliasA{hat}{influence.measures}{hat} [1502] [1503] Underfull \hbox (badness 1484) in paragraph at lines 12198--12200 []\T1/ptm/m/n/10 The func-tion []\T1/zi4/m/sl/10 hat() []\T1/ptm/m/n/10 ex-ists mainly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1504] [1505] [1506] [1507] [1508] [1509] [1510] [1511] [1512] Underfull \hbox (badness 10000) in paragraph at lines 12785--12787 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][][]\T1/zi4/m/sl/10 solve.d efault[][][] []\T1/ptm/m/n/10 when []\T1/zi4/m/sl/10 SSinit = [1513] [1514] [1515] [1516] [1517] Underfull \hbox (badness 2894) in paragraph at lines 13127--13131 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1518] [1519] [1520] [1521] [1522] [1523] Underfull \hbox (badness 1496) in paragraph at lines 13555--13561 []\T1/ptm/m/n/10 Gunar Schröer and Di-et-rich Tren-kler (1995). Ex-act and Ran- dom-iza-tion Dis-tri-bu-tions of [1524] [1525] [1526] [1527] [1528] [1529] Underfull \hbox (badness 4518) in paragraph at lines 13958--13963 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1530] [1531] [1532] [1533] [1534] [1535] [1536] [1537] [1538] [1539] Underfull \hbox (badness 4518) in paragraph at lines 14620--14625 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1540] [1541] Underfull \hbox (badness 6412) in paragraph at lines 14760--14764 []\T1/ptm/m/n/10 Only for the (de-fault) case []\T1/zi4/m/sl/10 (surface = "int erpolate", statistics = Underfull \hbox (badness 1199) in paragraph at lines 14767--14769 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if []\T1/zi4/m/sl/10 family []\T1/ptm/m/n/10 is [1542] [1543] [1544] [1545] [1546] [1547] [1548] [1549] [1550] [1551] [1552] [1553] [1554] [1555] [1556] [1557] Underfull \hbox (badness 2503) in paragraph at lines 15843--15847 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , [1558] [1559] [1560] [1561] [1562] [1563] [1564] Underfull \hbox (badness 10000) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.extract(m, "offset") []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 model.extract(m, "response") []\T1/ptm/m/n/10 are equiv-a-lent to Underfull \hbox (badness 1867) in paragraph at lines 16356--16362 []\T1/zi4/m/sl/10 model.offset(m) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 model. response(m) []\T1/ptm/m/n/10 re-spec-tively. []\T1/zi4/m/sl/10 model.offset []\ T1/ptm/m/n/10 sums any terms [1565] [1566] [1567] [1568] [1569] [1570] [1571] [1572] [1573] [1574] [1575] [1576] [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] Underfull \hbox (badness 1158) in paragraph at lines 18014--18017 []\T1/ptm/m/n/10 the ex-pres-sion that was passed to []\T1/zi4/m/sl/10 nls []\T 1/ptm/m/n/10 as the data ar-gu-ment. The ac- [1590] [1591] Underfull \vbox (badness 10000) has occurred while \output is active [1592] Underfull \vbox (badness 10000) has occurred while \output is active [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] Underfull \hbox (badness 1377) in paragraph at lines 19057--19062 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 19062--19065 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 19075--19079 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 19075--19079 \T1/ptm/m/n/10 the value by a fac-tor of []\T1/zi4/m/sl/10 reltol * (abs(val) + reltol) []\T1/ptm/m/n/10 at a step. De-faults to Underfull \hbox (badness 2662) in paragraph at lines 19083--19087 []\T1/ptm/m/n/10 The fre-quency of re-ports for the []\T1/zi4/m/sl/10 "BFGS"[]\ T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "L-BFGS-B" []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 "SANN" []\T1/ptm/m/n/10 meth-ods if [1606] [1607] [1608] Overfull \hbox (15.73795pt too wide) in paragraph at lines 19308--19308 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Underfull \vbox (badness 10000) has occurred while \output is active [1609] Overfull \hbox (3.75941pt too wide) in paragraph at lines 19311--19311 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1610] [1611] [1612] [1613] [1614] [1615] Underfull \hbox (badness 1337) in paragraph at lines 19773--19776 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1616] [1617] [1618] [1619] [1620] [1621] [1622] [1623] Underfull \hbox (badness 10000) in paragraph at lines 20242--20248 \T1/zi4/m/sl/10 legend = "Cook\TS1/zi4/m/n/10 '\T1/zi4/m/sl/10 s distance", lty = cook.lty, col = cook.col, text.col [1624] [1625] [1626] [1627] [1628] [1629] [1630] Underfull \hbox (badness 1194) in paragraph at lines 20669--20672 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1631] [1632] [1633] [1634] [1635] [1636] Underfull \hbox (badness 2503) in paragraph at lines 21047--21050 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of []\T1/zi4/m/sl/10 "two.sided"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 21074--21076 []\T1/ptm/m/n/10 the char-ac-ter string []\T1/zi4/m/sl/10 "Exact Poisson test" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 "Comparison of Poisson [1637] [1638] [1639] [1640] [1641] [1642] [1643] [1644] [1645] [1646] [1647] [1648] [1649] [1650] [1651] [1652] [1653] Underfull \hbox (badness 10000) in paragraph at lines 22152--22158 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][][]\T1/zi4/m/sl/10 predict.ar [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.Arima[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 predict.arima0[][][][]\T1/ptm/m/n/10 , [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] [1670] [1671] [1672] [1673] [1674] [1675] [1676] Underfull \hbox (badness 1337) in paragraph at lines 23628--23634 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1677] [1678] [1679] [1680] [1681] [1682] [1683] [1684] Underfull \hbox (badness 1436) in paragraph at lines 24118--24121 \T1/ptm/m/n/10 per-cent-ages. In \T1/phv/m/n/10 R \T1/ptm/m/n/10 ver-sions up t o 4.0.x, this had been set to []\T1/zi4/m/sl/10 max(2, [1685] Underfull \hbox (badness 10000) in paragraph at lines 24256--24257 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . o rg / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1686] [1687] [1688] [1689] [1690] [1691] [1692] [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] Underfull \hbox (badness 1824) in paragraph at lines 25226--25232 []\T1/ptm/m/n/10 Here, all the NAs in []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 25226--25232 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where Underfull \hbox (badness 10000) in paragraph at lines 25247--25250 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult []\T1/zi4/m/sl/10 y = runmed(x, k) []\T1/ptm/m/n/10 sim-ply has []\T1/zi4/m/sl/10 y[j] = [1701] [1702] [1703] [1704] [1705] [1706] [1707] [1708] [1709] Underfull \hbox (badness 2165) in paragraph at lines 25822--25827 []\T1/ptm/m/n/10 Each of the fol-low-ing are []\T1/zi4/m/sl/10 "selfStart" []\T 1/ptm/m/n/10 mod-els (with ex-am-ples) [][][]\T1/zi4/m/sl/10 SSasymp[][][][]\T1 /ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 SSasympOff[][][][]\T1/ptm/m/n/10 , [1710] [1711] [1712] [1713] Underfull \hbox (badness 1867) in paragraph at lines 26032--26034 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 26048--26052 []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 NN <- [][]nobs[][][](object, use.fallb ack = use.fallback) []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 PP <- [1714] [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] [1733] [1734] [1735] [1736] Underfull \vbox (badness 10000) has occurred while \output is active [1737] Underfull \hbox (badness 3514) in paragraph at lines 27700--27705 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1738] [1739] [1740] [1741] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27934--27934 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1742] Underfull \hbox (badness 3514) in paragraph at lines 27970--27976 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1743] Overfull \hbox (14.22568pt too wide) in paragraph at lines 28030--28030 [] \T1/zi4/m/n/9 control = list(scaleOffset=1, printEval=TRUE, tol= 1e-11, nDcentral=TRUE), trace=TRUE)[] [1744] [1745] Underfull \hbox (badness 3514) in paragraph at lines 28203--28208 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1746] [1747] Underfull \hbox (badness 3514) in paragraph at lines 28290--28295 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1748] Underfull \hbox (badness 3514) in paragraph at lines 28355--28360 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1749] Underfull \hbox (badness 3514) in paragraph at lines 28449--28454 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 inp ut[]\T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1750] [1751] Underfull \hbox (badness 6691) in paragraph at lines 28541--28546 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as []\T1/zi4/m/sl/10 x[] \T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1752] [1753] [1754] [1755] [1756] [1757] [1758] [1759] Underfull \hbox (badness 4024) in paragraph at lines 29028--29031 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1760] [1761] [1762] [1763] [1764] [1765] [1766] [1767] [1768] Underfull \hbox (badness 5431) in paragraph at lines 29631--29633 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1769] [1770] [1771] Underfull \hbox (badness 5431) in paragraph at lines 29841--29844 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above []\T1 /zi4/m/sl/10 cov.unscaled[]\T1/ptm/m/n/10 , if [1772] [1773] [1774] [1775] [1776] Underfull \hbox (badness 1337) in paragraph at lines 30156--30160 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1777] [1778] [1779] Underfull \hbox (badness 1127) in paragraph at lines 30293--30296 []\T1/ptm/m/n/10 non-centrality pa-ram-e-ter $\OML/cmm/m/it/10 ^^N$\T1/ptm/m/n/ 10 ; cur-rently ex-cept for []\T1/zi4/m/sl/10 rt()[]\T1/ptm/m/n/10 , ac-cu-rate only for [1780] [1781] Underfull \hbox (badness 1616) in paragraph at lines 30499--30502 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1782] [1783] [1784] [1785] [1786] [1787] [1788] [1789] [1790] [1791] [1792] [1793] [1794] [1795] [1796] [1797] [1798] [1799] [1800] Underfull \hbox (badness 3557) in paragraph at lines 31726--31730 []\T1/ptm/m/n/10 Setting []\T1/zi4/m/sl/10 extendInt []\T1/ptm/m/n/10 to a non- []\T1/zi4/m/sl/10 "no" []\T1/ptm/m/n/10 string, means search-ing for the cor-re ct []\T1/zi4/m/sl/10 interval = [1801] [1802] [1803] [1804] [1805] [1806] Underfull \hbox (badness 1337) in paragraph at lines 32093--32097 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1807] [1808] [1809] [1810] [1811] [1812] [1813] [1814] Underfull \hbox (badness 1337) in paragraph at lines 32621--32625 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1815] [1816] [1817] Overfull \hbox (0.71648pt too wide) in paragraph at lines 32829--32829 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1818] [1819] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32990--32990 [] \T1/zi4/m/sl/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.ep s = getOption("ts.eps"), ...)[] [1820] [1821] [1822] [1823] [1824]) (./stats4-pkg.tex Chapter 11. [1825] [1826] [1827] Underfull \vbox (badness 10000) has occurred while \output is active [1828] [1829] [1830] [1831] [1832] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.show.Rdas h.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1833] [1834] [1835]) (./tcltk-pkg.tex [1836] Chapter 12. [1837] [1838] [1839] [1840] [1841] [1842] [1843] Underfull \vbox (badness 10000) has occurred while \output is active [1844] Underfull \hbox (badness 1546) in paragraph at lines 672--679 []\T1/zi4/m/sl/10 tcl []\T1/ptm/m/n/10 pro-vides a generic in-ter-face to call- ing any Tk or Tcl com-mand by sim-ply run-ning [1845] [1846] [1847] [1848] [1849] [1850] [1851] [1852] [1853] [1854] [1855] [1856]) (./tools-pkg.tex Chapter 13. [1857] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1858] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/sl/10 assertWarning() []\T1/ptm/m/n/10 as-serts that a warn-ing wil l be sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1859] [1860] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][][]\T1/zi4/m/sl/10 b ibentry[][][] []\T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatIncollection[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 format InProceedings[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatManual[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatMastersthesis[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 []\T1/zi4/m/sl/10 formatMisc[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatPhdthesi s[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 formatProceedings[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 formatTechreport []\T1/ptm/m/n/10 and [1861] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gi ne to use. Over-rides any [1862] [1863] Underfull \hbox (badness 1142) in paragraph at lines 464--468 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1864] [1865] [1866] [1867] [1868] [1869] [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 1014) in paragraph at lines 1220--1222 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1226--1228 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous [1875] Underfull \hbox (badness 10000) in paragraph at lines 1263--1266 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1263--1266 []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_results []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 summarize_check_packages_in_dir_timings[]\T1/ptm/m/n/10 , [1876] [1877] [1878] [1879] [1880] Underfull \hbox (badness 10000) in paragraph at lines 1637--1640 []\T1/ptm/m/n/10 Internal func-tions []\T1/zi4/m/sl/10 CRAN_aliases_db[]\T1/ptm /m/n/10 , []\T1/zi4/m/sl/10 CRAN_archive_db[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 CRAN_current_db []\T1/ptm/m/n/10 and [1881] [1882] Underfull \hbox (badness 4096) in paragraph at lines 1756--1764 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string Underfull \hbox (badness 1082) in paragraph at lines 1766--1768 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 for all known trees (see [1883] [1884] [1885] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.GSC}) has been already used, duplicate ignored \relax l.1967 \aliasA{GSC}{find\_gs\_cmd}{GSC} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSC MD}) has been already used, duplicate ignored \relax l.1968 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1886] [1887] [1888] [1889] [1890] [1891] [1892] Underfull \hbox (badness 3386) in paragraph at lines 2442--2445 []\T1/ptm/m/n/10 The de-fault method of []\T1/zi4/m/sl/10 as.Rconcordance []\T1 /ptm/m/n/10 searches for strings match-ing the pat-tern of [1893] [1894] Underfull \hbox (badness 4096) in paragraph at lines 2582--2590 \T1/zi4/m/sl/10 "Imports", "LinkingTo", "Suggests", "Enhances")[]\T1/ptm/m/n/10 . Char-ac-ter string [1895] [1896] [1897] [1898] [1899] [1900] [1901] [1902] [1903] [1904] [1905] [1906] [1907] Underfull \hbox (badness 1424) in paragraph at lines 3516--3518 []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec -tor of links, as re-turned by [1908] [1909] [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] Underfull \hbox (badness 10000) in paragraph at lines 4232--4234 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1919] [1920] Underfull \hbox (badness 10000) in paragraph at lines 4388--4391 []\T1/ptm/m/n/10 Where sup-ported ([]\T1/zi4/m/sl/10 texi2dvi []\T1/ptm/m/n/10 5.0 and later; []\T1/zi4/m/sl/10 texify.exe []\T1/ptm/m/n/10 from MiK-TeX), op- tion [1921] [1922] [1923] [1924] [1925] [1926] Underfull \hbox (badness 1796) in paragraph at lines 4745--4750 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over [] \T1/zi4/m/sl/10 write_PACKAGES []\T1/ptm/m/n/10 in the []\T1/zi4/m/sl/10 type = = [1927] Underfull \hbox (badness 1838) in paragraph at lines 4831--4837 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/sl/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4831--4837 \T1/ptm/m/n/10 `\T1/zi4/m/sl/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1928] [1929] [1930] [1931] Underfull \hbox (badness 2197) in paragraph at lines 5112--5122 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][][]\T1/z i4/m/sl/10 available.packages[][][][]\T1/ptm/m/n/10 : [1932] Underfull \hbox (badness 1571) in paragraph at lines 5178--5182 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1933] [1934] [1935]) (./utils-pkg.tex [1936] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `[] \T1/zi4/m/sl/10 insertions[]\T1/ptm/m/n/10 ', [1937] [1938] [1939] [1940] [1941] [1942] [1943] [1944] [1945] [1946] [1947] Underfull \hbox (badness 10000) in paragraph at lines 728--734 []\T1/ptm/m/n/10 Functions []\T1/zi4/m/sl/10 aspell_package_Rd_files[]\T1/ptm/m /n/10 , []\T1/zi4/m/sl/10 aspell_package_vignettes[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 728--734 []\T1/zi4/m/sl/10 aspell_package_R_files []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 aspell_package_C_files []\T1/ptm/m/n/10 per-form spell check-ing on the [1948] [1949] Underfull \hbox (badness 3861) in paragraph at lines 934--939 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields []\T1/zi4/m/sl/10 "OS_type"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "License"[]\T1/ptm/m/n/10 , []\T1 /zi4/m/sl/10 "License_is_FOSS"[]\T1/ptm/m/n/10 , [1950] [1951] [1952] Underfull \hbox (badness 10000) in paragraph at lines 1139--1141 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1953] [1954] [1955] Underfull \vbox (badness 10000) has occurred while \output is active [1956] [1957] [1958] [1959] [1960] Underfull \hbox (badness 1371) in paragraph at lines 1666--1668 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [1961] [1962] [1963] [1964] [1965] [1966] [1967] [1968] [1969] [1970] Underfull \hbox (badness 2057) in paragraph at lines 2386--2388 []\T1/ptm/m/n/10 None for []\T1/zi4/m/sl/10 chooseCRANmirror()[]\T1/ptm/m/n/10 , this func-tion is in-voked for its side ef-fect of up-dat-ing [1971] Underfull \hbox (badness 2150) in paragraph at lines 2461--2468 []\T1/ptm/m/n/10 If the ob-ject re-turned by []\T1/zi4/m/sl/10 citation() []\T1 /ptm/m/n/10 con-tains only one ref-er-ence, the as-so-ci-ated print Underfull \hbox (badness 1400) in paragraph at lines 2461--2468 \T1/ptm/m/n/10 method shows both a text ver-sion and a Bib-TeX en-try for it. I f a pack-age has more [1972] [1973] [1974] [1975] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.clipboard }) has been already used, duplicate ignored \relax l.2738 ... the Clipboard in MS Windows}{clipboard} [1976] [1977] [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] [1986] [1987] [1988] [1989] [1990] [1991] [1992] [1993] [1994] Underfull \hbox (badness 6842) in paragraph at lines 4048--4053 []\T1/ptm/m/n/10 Support for method []\T1/zi4/m/sl/10 "libcurl" []\T1/ptm/m/n/1 0 was op-tional on Win-dows prior to \T1/phv/m/n/10 R \T1/ptm/m/n/10 4.2.0: use [1995] Underfull \hbox (badness 1430) in paragraph at lines 4111--4115 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the []\T1/zi4/m/sl/10 quiet []\T1/ptm/m/n/10 ar-gu-ment and the [1996] Underfull \hbox (badness 1184) in paragraph at lines 4182--4198 []\T1/ptm/m/n/10 On Win-dows with []\T1/zi4/m/sl/10 method = "libcurl"[]\T1/ptm /m/n/10 , the CA root cer-tifi-cates are pro-vided by the OS Underfull \hbox (badness 1019) in paragraph at lines 4182--4198 \T1/ptm/m/n/10 con-tain-ing `[]\T1/zi4/m/sl/10 "Schannel"[]\T1/ptm/m/n/10 '. If it does not, for ver-i-fi-ca-tion to be on the en-vi-ron-ment vari- Underfull \hbox (badness 1668) in paragraph at lines 4182--4198 \T1/ptm/m/n/10 able []\T1/zi4/m/sl/10 CURL_CA_BUNDLE []\T1/ptm/m/n/10 must be s et to a path to a cer-tifi-cate bun-dle file, usu-ally named [1997] [1998] Underfull \hbox (badness 10000) in paragraph at lines 4332--4334 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][][]\T1/zi4/m/sl/10 d ownload.file[][][] []\T1/ptm/m/n/10 and [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] [2007] [2008] [2009] [2010] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.5111 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.format.1} ) has been already used, duplicate ignored \relax l.5111 ...mat Unordered and Ordered Lists}{format} [2011] [2012] [2013] [2014] [2015] [2016] [2017] [2018] Underfull \hbox (badness 1622) in paragraph at lines 5634--5638 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [2019] [2020] [2021] [2022] [2023] Underfull \hbox (badness 1448) in paragraph at lines 6019--6024 []\T1/ptm/m/n/10 External pointer ob-jects are com-pared as ref-er-ence ob-ject s, cor-re-spond-ing to call-ing [2024] [2025] [2026] [2027] [2028] [2029] [2030] [2031] Underfull \hbox (badness 1371) in paragraph at lines 6567--6569 []\T1/ptm/m/n/10 additional named ar-gu-ments such as []\T1/zi4/m/sl/10 method []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 ccaddress []\T1/ptm/m/n/10 to pass to [2032] Underfull \hbox (badness 1502) in paragraph at lines 6656--6662 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6656--6662 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [2033] [2034] [2035] Underfull \hbox (badness 10000) in paragraph at lines 6833--6842 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, Underfull \hbox (badness 3354) in paragraph at lines 6833--6842 \T1/ptm/m/n/10 `\T1/ptm/m/sl/10 R_DOC_DIR\T1/zi4/m/sl/10 /html/packages.html\T1 /ptm/m/n/10 ', which can be re-made by [][][]\T1/zi4/m/sl/10 make.packages.html [][][]()[]\T1/ptm/m/n/10 . [2036] Underfull \hbox (badness 2150) in paragraph at lines 6895--6898 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [2037] [2038] Underfull \hbox (badness 3118) in paragraph at lines 7034--7036 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [2039] [2040] Underfull \hbox (badness 1325) in paragraph at lines 7213--7217 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][][]\T1/zi4/m/sl/10 available.pack ages[][][] []\T1/ptm/m/n/10 list-ing pack-ages avail-able [2041] Underfull \hbox (badness 1424) in paragraph at lines 7305--7308 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [2042] Underfull \hbox (badness 3219) in paragraph at lines 7377--7384 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is []\T1/zi4/m/s l/10 "both" []\T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 7377--7384 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 7377--7384 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 7377--7384 [][][]\T1/zi4/m/sl/10 getOption[][][]("install.packages.compile.from.source")[] \T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 type = "both" []\T1/ptm/m/n/10 will be silen tly Underfull \hbox (badness 2932) in paragraph at lines 7385--7388 []\T1/ptm/m/n/10 Using pack-ages with []\T1/zi4/m/sl/10 type = "source" []\T1/p tm/m/n/10 al-ways works pro-vided the pack-age con-tains no [2043] Underfull \hbox (badness 1024) in paragraph at lines 7514--7517 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing []\T1/zi4/m/sl/10 available. packages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/sl/10 , ] []\T1/ ptm/m/n/10 will [2044] Underfull \hbox (badness 10000) in paragraph at lines 7547--7552 [][][]\T1/zi4/m/sl/10 update.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download. packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][] []\T1/ptm/m/n/10 , [2045] Underfull \hbox (badness 5133) in paragraph at lines 7606--7610 []\T1/ptm/m/n/10 a char-ac-ter vec-tor giv-ing the fields to ex-tract from each pack-age's [2046] [2047] [2048] [2049] [2050] [2051] [2052] [2053] [2054] [2055] Underfull \hbox (badness 10000) in paragraph at lines 8270--8272 []\T1/ptm/m/n/10 typically the re-sult of []\T1/zi4/m/sl/10 methods(..)[]\T1/pt m/m/n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [2056] [2057] [2058] [2059] [2060] [2061] [2062] [2063] [2064] [2065] [2066] [2067] Underfull \hbox (badness 2310) in paragraph at lines 9057--9062 []\T1/ptm/m/n/10 If a `\T1/zi4/m/sl/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [2068] [2069] [2070] [2071] [2072] [2073] [2074] [2075] Underfull \hbox (badness 1248) in paragraph at lines 9628--9632 []\T1/zi4/m/sl/10 R CMD build []\T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/ m/n/10 source tar-balls. The name(s) of the pack-ages are taken from the [2076] Underfull \hbox (badness 1789) in paragraph at lines 9706--9708 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [2077] [2078] [2079] [2080] Underfull \hbox (badness 2600) in paragraph at lines 9930--9933 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the name of the help topic; de-faults to [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] Underfull \hbox (badness 1097) in paragraph at lines 10567--10570 []\T1/ptm/m/n/10 The name []\T1/zi4/m/sl/10 "clipboard" []\T1/ptm/m/n/10 may al so be used on Win-dows, in which case [2089] [2090] Underfull \hbox (badness 3000) in paragraph at lines 10703--10708 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 read.table[][][][]\T1/ptm/m/n/10 ; [2091] [2092] [2093] [2094] [2095] [2096] [2097] [2098] Underfull \hbox (badness 2134) in paragraph at lines 11298--11303 [][][]\T1/zi4/m/sl/10 scan[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 type.c onvert[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 read.fwf[][][] []\T1/ptm/m /n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/pt m/m/n/10 idth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][][]\T1/zi4/m/ sl/10 write.table[][][][]\T1/ptm/m/n/10 ; [2099] Underfull \hbox (badness 10000) in paragraph at lines 11354--11359 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 11354--11359 []\T1/zi4/m/sl/10 HKEY_LOCAL_MACHINE[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 HKEY_C LASSES_ROOT[]\T1/ptm/m/n/10 . []\T1/zi4/m/sl/10 HKEY_CURRENT_USER[]\T1/ptm/m/n/ 10 , [2100] [2101] [2102] [2103] [2104] [2105] [2106] [2107] Underfull \hbox (badness 1824) in paragraph at lines 11852--11856 \T1/zi4/m/sl/10 / / en . wikipedia . org / w / index . php ? title = Roman _ nu merals & oldid = 1188781837$[][]\T1/ptm/m/n/10 . Ac-cessed [2108] [2109] [2110] [2111] [2112] [2113] Underfull \hbox (badness 4060) in paragraph at lines 12300--12303 []\T1/ptm/m/n/10 If `[]\T1/zi4/m/sl/10 --default-packages[]\T1/ptm/m/n/10 ' is not used, then []\T1/zi4/m/sl/10 Rscript []\T1/ptm/m/n/10 checks the en-vi-ron- ment vari-able Overfull \hbox (18.77168pt too wide) in paragraph at lines 12323--12323 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2114] [2115] [2116] [2117] Underfull \hbox (badness 2150) in paragraph at lines 12578--12580 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / www . gnu . org / software / emac s / manual / [2118] [2119] [2120] Underfull \hbox (badness 10000) in paragraph at lines 12798--12802 []\T1/ptm/m/n/10 The de-fault for []\T1/zi4/m/sl/10 stylepath []\T1/ptm/m/n/10 is now taken from the en-vi-ron-ment vari-able [2121] Underfull \hbox (badness 10000) in paragraph at lines 12831--12837 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a Underfull \hbox (badness 2762) in paragraph at lines 12846--12852 \T1/ptm/m/n/10 UTF-8 lo-cales (note that pdf-TeX as-sumes UTF-8 by de-fault sin ce 2018). Ei-ther set [2122] [2123] Underfull \hbox (badness 1009) in paragraph at lines 13021--13033 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2124] Underfull \hbox (badness 4779) in paragraph at lines 13061--13063 []\T1/ptm/m/n/10 The file `\T1/zi4/m/sl/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI ([]\T1/zi4/m/sl/10 Rgui[]\T1/ptm/m/n/10 ) con-sole un-der MS Win-do ws and Underfull \hbox (badness 1077) in paragraph at lines 13091--13098 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2125] [2126] [2127] [2128] [2129] [2130] Underfull \hbox (badness 3780) in paragraph at lines 13516--13522 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][][]\ T1/zi4/m/sl/10 options[][][]("BioC_mirror")[]\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 13534--13537 []\T1/ptm/m/n/10 Repository `[]\T1/zi4/m/sl/10 CRAN[]\T1/ptm/m/n/10 ' is treate d spe-cially: the value is taken from the cur-rent set-ting of [2131] [2132] [2133] [2134] Underfull \hbox (badness 2302) in paragraph at lines 13744--13746 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2135] [2136] [2137] [2138] Underfull \hbox (badness 4441) in paragraph at lines 14043--14048 []\T1/ptm/m/n/10 logical; if []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , [][][]\T1/zi4/m/sl/10 deparse[][][](control = \T1/ptm/m/sl/10 control\T1/zi4/ m/sl/10 ) []\T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 14052--14055 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2139] [2140] [2141] [2142] [2143] [2144] [2145] Underfull \hbox (badness 2932) in paragraph at lines 14483--14490 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 syntax = NULL []\T1/ptm/m/n/10 (the de-fa ult) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 14483--14490 \T1/ptm/m/n/10 and se-lected if their []\T1/zi4/m/sl/10 extension []\T1/ptm/m/n /10 com-po-nent matches (as a reg-exp) the file name. Ob- [2146] [2147] Underfull \hbox (badness 1460) in paragraph at lines 14647--14656 \T1/ptm/m/n/10 drives can be in-cluded in filepaths). []\T1/zi4/m/sl/10 Rtools []\T1/ptm/m/n/10 4 and ear-lier in-cluded a []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n /10 which used Underfull \hbox (badness 1019) in paragraph at lines 14665--14677 []\T1/ptm/m/n/10 For GNU []\T1/zi4/m/sl/10 tar[]\T1/ptm/m/n/10 , `[]\T1/zi4/m/s l/10 --format=ustar[]\T1/ptm/m/n/10 ' forces a more portable for-mat. (The de-f ault is set at Underfull \hbox (badness 1527) in paragraph at lines 14665--14677 \T1/ptm/m/n/10 com-pi-la-tion and will be shown at the end of the out-put from []\T1/zi4/m/sl/10 tar --help[]\T1/ptm/m/n/10 : for ver-sion [2148] [2149] Underfull \hbox (badness 6510) in paragraph at lines 14797--14801 []\T1/ptm/m/n/10 When ar-gu-ment []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 is set to the com-mand []\T1/zi4/m/sl/10 tar []\T1/ptm/m/n/10 on ma-cOS, en-vi-ron-men t vari-able Underfull \hbox (badness 10000) in paragraph at lines 14804--14807 [][][]$\T1/zi4/m/sl/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14804--14807 \T1/zi4/m/sl/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] Underfull \hbox (badness 10000) in paragraph at lines 15477--15482 []\T1/ptm/m/n/10 Arguments such as []\T1/zi4/m/sl/10 destdir []\T1/ptm/m/n/10 a nd []\T1/zi4/m/sl/10 dependencies []\T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 15477--15482 [][][]\T1/zi4/m/sl/10 install.packages[][][] []\T1/ptm/m/n/10 and []\T1/zi4/m/s l/10 ignore_repo_cache[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 max_repo_cache_age [ ]\T1/ptm/m/n/10 and Underfull \hbox (badness 1052) in paragraph at lines 15483--15485 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See [2159] Underfull \hbox (badness 10000) in paragraph at lines 15542--15545 [][][]\T1/zi4/m/sl/10 install.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 available.packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 download .packages[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 installed.packages[][][ ][]\T1/ptm/m/n/10 , [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] [2174]) [2175] [2176] (./KernSmooth-pkg.tex Chapter 15. [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186]) (./MASS-pkg.tex Chapter 16. [2187] [2188] [2189] [2190] [2191] [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] [2205] [2206] [2207] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.g lm}) has been already used, duplicate ignored \relax l.1479 ...{confint.glm}{confint-MASS}{confint.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.confint.n ls}) has been already used, duplicate ignored \relax l.1480 ...{confint.nls}{confint-MASS}{confint.nls} [2208] [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] Underfull \hbox (badness 10000) in paragraph at lines 2789--2794 []\T1/zi4/m/sl/10 "geometric"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "log-normal"[ ]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "lognormal"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "logistic"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "negative [2226] [2227] Underfull \hbox (badness 4686) in paragraph at lines 2961--2963 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] Underfull \hbox (badness 1117) in paragraph at lines 4740--4743 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2253] Underfull \hbox (badness 1117) in paragraph at lines 4819--4822 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2254] [2255] [2256] [2257] [2258] [2259] [2260] [2261] [2262] [2263] [2264] [2265] [2266] [2267] [2268] [2269] [2270] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6086 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.npk.1}) h as been already used, duplicate ignored \relax l.6086 ...sical N, P, K Factorial Experiment}{npk} [2271] [2272] [2273] [2274] [2275] [2276] [2277] [2278] [2279] [2280] [2281] [2282] Underfull \hbox (badness 1117) in paragraph at lines 6987--6994 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [2283] Underfull \hbox (badness 3138) in paragraph at lines 7058--7064 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2284] [2285] [2286] Underfull \hbox (badness 1910) in paragraph at lines 7237--7240 []\T1/ptm/m/n/10 the di-men-sion of the space to be used. If this is less than []\T1/zi4/m/sl/10 min(p, [2287] [2288] [2289] [2290] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm}) has been already used, duplicate ignored \relax l.7514 ... for Profiling glm Objects}{profile.glm} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.profile.g lm.1}) has been already used, duplicate ignored \relax l.7514 ... for Profiling glm Objects}{profile.glm} [2291] [2292] [2293] [2294] Underfull \hbox (badness 4686) in paragraph at lines 7809--7811 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2295] [2296] [2297] [2298] [2299] [2300] [2301] [2302] [2303] [2304] [2305] [2306] [2307] [2308] [2309] [2310] [2311] [2312] [2313] [2314] [2315] [2316] [2317] [2318] [2319] [2320] [2321] [2322] [2323] [2324] [2325] [2326] [2327] [2328] [2329] [2330] [2331]) (./Matrix-pkg.tex [2332] Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 35--38 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 35--38 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2333] Underfull \hbox (badness 1769) in paragraph at lines 89--92 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2334] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.all.equal }) has been already used, duplicate ignored \relax l.182 ...{all.equal}{all.equal-methods}{all.equal} [2335] Underfull \hbox (badness 3098) in paragraph at lines 264--266 []\T1/ptm/m/n/10 optional ar-gu-ments passed to the de-fault method for generic func-tion [2336] [2337] [2338] Underfull \hbox (badness 5119) in paragraph at lines 492--496 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2339] [2340] Underfull \hbox (badness 2035) in paragraph at lines 590--593 []\T1/ptm/m/n/10 The value of []\T1/zi4/m/sl/10 bdiag() []\T1/ptm/m/n/10 in-her -its from class [][][]\T1/zi4/m/sl/10 CsparseMatrix[][][][]\T1/ptm/m/n/10 , whe reas []\T1/zi4/m/sl/10 .bdiag() []\T1/ptm/m/n/10 re-turns a [2341] [2342] [2343] Underfull \hbox (badness 5817) in paragraph at lines 913--916 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 BunchKaufmanFactorization[][][][]\ T1/ptm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][ ][]\T1/ptm/m/n/10 , by class Underfull \hbox (badness 6758) in paragraph at lines 919--924 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("BunchKaufman", ...) Underfull \hbox (badness 2961) in paragraph at lines 919--924 []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 new("pBunchKaufman", ...)[]\T1/ptm/m/n/10 , but they are more typ-i-cally ob-tained as the value of [2344] [2345] Underfull \hbox (badness 10000) in paragraph at lines 1081--1086 []\T1/ptm/m/n/10 An ob-ject rep-re-sent-ing the fac-tor-iza-tion, in-her-it-ing from vir-tual class [2346] [2347] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1185 ... on cbind2/rbind2}{cbind2.Rdash.methods} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.cbind2}) has been already used, duplicate ignored \relax l.1186 \aliasA{cbind2}{cbind2-methods}{cbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2}) has been already used, duplicate ignored \relax l.1195 \aliasA{rbind2}{cbind2-methods}{rbind2} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rbind2.Rd ash.methods}) has been already used, duplicate ignored \relax l.1204 ...s}{cbind2-methods}{rbind2.Rdash.methods} [2348] Underfull \hbox (badness 10000) in paragraph at lines 1322--1329 []\T1/ptm/m/n/10 The im-ple-men-ta-tion of class []\T1/zi4/m/sl/10 CHMfactor [] \T1/ptm/m/n/10 is based on CHOLMOD's C-level [2349] [2350] [2351] [2352] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol}) ha s been already used, duplicate ignored \relax l.1625 \aliasA{chol}{chol-methods}{chol} Underfull \hbox (badness 6220) in paragraph at lines 1656--1658 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2353] Underfull \hbox (badness 2334) in paragraph at lines 1730--1734 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 1730--1734 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2354] Underfull \vbox (badness 10000) has occurred while \output is active [2355] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol2inv} ) has been already used, duplicate ignored \relax l.1854 ...sA{chol2inv}{chol2inv-methods}{chol2inv} [2356] [2357] Underfull \hbox (badness 10000) in paragraph at lines 2005--2008 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 CholeskyFactorization[][][][]\T1/p tm/m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\ T1/ptm/m/n/10 , by class Underfull \hbox (badness 7722) in paragraph at lines 2011--2019 []\T1/ptm/m/n/10 Objects can be gen-er-ated di-rectly by calls of the form []\T 1/zi4/m/sl/10 new("Cholesky", ...) []\T1/ptm/m/n/10 or Underfull \hbox (badness 1990) in paragraph at lines 2051--2060 []\T1/ptm/m/n/10 In \T1/ptm/b/n/10 Ma-trix []\T1/zi4/m/sl/10 < 1.6-0[]\T1/ptm/m /n/10 , class []\T1/zi4/m/sl/10 Cholesky []\T1/ptm/m/n/10 ex-tended [][][]\T1/z i4/m/sl/10 dtrMatrix[][][] []\T1/ptm/m/n/10 and class []\T1/zi4/m/sl/10 pCholes ky []\T1/ptm/m/n/10 ex-tended Underfull \hbox (badness 2334) in paragraph at lines 2066--2070 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2066--2070 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2358] [2359] Underfull \hbox (badness 6220) in paragraph at lines 2185--2187 []\T1/ptm/m/n/10 Methods for [][][]\T1/zi4/m/sl/10 sparseMatrix[][][] []\T1/ptm /m/n/10 are built on CHOLMOD rou-tines []\T1/zi4/m/sl/10 cholmod_analyze []\T1/ ptm/m/n/10 and [2360] [2361] Underfull \hbox (badness 2334) in paragraph at lines 2315--2319 []\T1/ptm/m/n/10 The LA-PACK source code, in-clud-ing doc-u-men-ta-tion; see [] []$\T1/zi4/m/sl/10 https : / / netlib . org / lapack / Underfull \hbox (badness 1616) in paragraph at lines 2315--2319 \T1/zi4/m/sl/10 double / dpstrf . f$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/sl/10 h ttps : / / netlib . org / lapack / double / dpotrf . f$[][]\T1/ptm/m/n/10 , and [][]$\T1/zi4/m/sl/10 https : / / netlib . [2362] Underfull \vbox (badness 10000) has occurred while \output is active [2363] Underfull \vbox (badness 10000) has occurred while \output is active [2364] [2365] [2366] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colMeans} ) has been already used, duplicate ignored \relax l.2696 ...asA{colMeans}{colSums-methods}{colMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colSums}) has been already used, duplicate ignored \relax l.2704 \aliasA{colSums}{colSums-methods}{colSums} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowMeans} ) has been already used, duplicate ignored \relax l.2711 ...asA{rowMeans}{colSums-methods}{rowMeans} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rowSums}) has been already used, duplicate ignored \relax l.2719 \aliasA{rowSums}{colSums-methods}{rowSums} [2367] [2368] [2369] Underfull \hbox (badness 3547) in paragraph at lines 2888--2891 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2370] [2371] [2372] [2373] [2374] [2375] Underfull \hbox (badness 1983) in paragraph at lines 3390--3398 []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unpackedMatrix[][][][]\T1/ptm/m/n/10 . Al-ter-na-tively into the (cur-rently) three sub-classes [][][]\T1/zi4/m/sl/ 10 ddenseMatrix[][][][]\T1/ptm/m/n/10 , [2376] [2377] [2378] [2379] Underfull \hbox (badness 2717) in paragraph at lines 3712--3716 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2380] Underfull \hbox (badness 3417) in paragraph at lines 3828--3830 []\T1/zi4/m/sl/10 .sparseDiagonal() []\T1/ptm/m/n/10 ex-ists pri-mar-ily to lev er-age ef-fi-cient C-level meth-ods avail-able for [2381] [2382] Underfull \hbox (badness 8019) in paragraph at lines 3933--3935 []\T1/zi4/m/sl/10 signature(x = "nMatrix")[]\T1/ptm/m/n/10 , se-man-ti-cally eq uiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [][][]\T1/zi4/m/sl/1 0 which[][][](x, Underfull \hbox (badness 10000) in paragraph at lines 3936--3940 []\T1/zi4/m/sl/10 signature(x = "diagonalMatrix")[]\T1/ptm/m/n/10 : all these g roup meth-ods re-turn a [2383] [2384] [2385] [2386] Underfull \hbox (badness 1902) in paragraph at lines 4263--4265 [][][]\T1/zi4/m/sl/10 drop0[][][](x, tol=1e-10) []\T1/ptm/m/n/10 is some-times prefer-able to (and more ef-fi-cient than) []\T1/zi4/m/sl/10 zapsmall(x, Underfull \hbox (badness 2020) in paragraph at lines 4300--4303 []\T1/ptm/m/n/10 a typ-i-cally sparse ma-trix; in-ter-nally co-erced to ei-ther []\T1/zi4/m/sl/10 "[][]dgCMatrix[][][]" []\T1/ptm/m/n/10 or [2387] [2388] [2389] Underfull \hbox (badness 4378) in paragraph at lines 4503--4512 []\T1/ptm/m/n/10 or [][][]\T1/zi4/m/sl/10 chol[][][]() []\T1/ptm/m/n/10 is typ- i-cally used, e.g., see []\T1/zi4/m/sl/10 selectMethod("coerce", c(from="dsyMat rix", [2390] [2391] [2392] [2393] Underfull \hbox (badness 10000) in paragraph at lines 4834--4837 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , by class [ ]\T1/zi4/m/sl/10 "dsparseMatrix"[]\T1/ptm/m/n/10 ; class []\T1/zi4/m/sl/10 "spa rseMatrix"[]\T1/ptm/m/n/10 , by classes [2394] Underfull \hbox (badness 4518) in paragraph at lines 4929--4932 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = Underfull \hbox (badness 3690) in paragraph at lines 4932--4935 []\T1/zi4/m/sl/10 signature(x = "dspMatrix", type = "character")[]\T1/ptm/m/n/1 0 , or []\T1/zi4/m/sl/10 x = "dsyMatrix" []\T1/ptm/m/n/10 or []\T1/zi4/m/sl/10 type = [2395] [2396] Underfull \hbox (badness 2318) in paragraph at lines 5035--5039 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "dgCMatrix"[]\T1/ptm/m/n/10 , di-rectl y. Class []\T1/zi4/m/sl/10 "triangularMatrix"[]\T1/ptm/m/n/10 , di-rectly. Clas s []\T1/zi4/m/sl/10 "dMatrix"[]\T1/ptm/m/n/10 , [2397] Underfull \hbox (badness 3240) in paragraph at lines 5151--5155 []\T1/zi4/m/sl/10 signature(x = "dtpMatrix", logarithm = "logical")[]\T1/ptm/m/ n/10 : the [][][]\T1/zi4/m/sl/10 determinant[][][](x) [2398] [2399] [2400] [2401] Underfull \hbox (badness 10000) in paragraph at lines 5399--5401 []\T1/ptm/m/n/10 a ma-trix fac-tor-iza-tion, typ-i-cally in-her-it-ing from vir -tual class [2402] Underfull \hbox (badness 10000) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 signature(x = "CHMfactor")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/s l/10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L)[]\T 1/ptm/m/n/10 . Underfull \hbox (badness 1776) in paragraph at lines 5522--5529 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1"]] []\T1/ptm/m/n/10 rep-re-sent the same per-mu-ta-tion ma-trix Underfull \hbox (badness 10000) in paragraph at lines 5529--5544 []\T1/zi4/m/sl/10 signature(x = "sparseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl /10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(P, L, U, Q )[]\T1/ptm/m/n/10 . Underfull \hbox (badness 10000) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 signature(x = "denseLU")[]\T1/ptm/m/n/10 : as []\T1/zi4/m/sl/ 10 expand2[]\T1/ptm/m/n/10 , but re-turn-ing []\T1/zi4/m/sl/10 list(L, U, P)[]\ T1/ptm/m/n/10 . Underfull \hbox (badness 1142) in paragraph at lines 5544--5549 []\T1/zi4/m/sl/10 expand(x)[["P"]] []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 expan d2(x)[["P1."]] []\T1/ptm/m/n/10 are iden-ti-cal mod-ulo []\T1/zi4/m/sl/10 Dimna mes[]\T1/ptm/m/n/10 . The [2403] [2404] [2405] [2406] [2407] [2408] Underfull \hbox (badness 1087) in paragraph at lines 5987--5993 []\T1/ptm/m/n/10 a string whose first three char-ac-ters spec-ify the class of the re-sult. It Underfull \hbox (badness 10000) in paragraph at lines 6000--6002 []\T1/ptm/m/n/10 a string in []\T1/zi4/m/sl/10 c("trace", "sumLog", "prod", "mi n", "max", "range", [2409] [2410] [2411] [2412] Underfull \hbox (badness 1931) in paragraph at lines 6262--6264 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the []\T1/zi4/m/sl/10 zero.print [] \T1/ptm/m/n/10 codes should be aligned, see [2413] [2414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.image}) h as been already used, duplicate ignored \relax l.6399 \aliasA{image}{image-methods}{image} [2415] Underfull \hbox (badness 1005) in paragraph at lines 6476--6481 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. []\T1/zi4/m/sl/10 N A []\T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1189) in paragraph at lines 6476--6481 \T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 as by de-fault, []\ T1/zi4/m/sl/10 border.col <- if(lwd < .01) NA else NULL []\T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 6495--6498 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ][]\T1/zi4/m/sl/10 dgTMatrix[][][] []\T1/ptm/m/n/10 class. Use [2416] Overfull \hbox (42.75635pt too wide) in paragraph at lines 6545--6545 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2417] [2418] [2419] [2420] Underfull \hbox (badness 1509) in paragraph at lines 6810--6812 []\T1/ptm/m/n/10 an in-te-ger off-set, in-di-cat-ing that the re-sult should be a per-mu-ta-tion of [2421] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.anyNA}) h as been already used, duplicate ignored \relax l.6888 \aliasA{anyNA}{is.na-methods}{anyNA} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.finite }) has been already used, duplicate ignored \relax l.6895 ...asA{is.finite}{is.na-methods}{is.finite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.infini te}) has been already used, duplicate ignored \relax l.6903 ...is.infinite}{is.na-methods}{is.infinite} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.na}) h as been already used, duplicate ignored \relax l.6911 \aliasA{is.na}{is.na-methods}{is.na} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.is.nan}) has been already used, duplicate ignored \relax l.6918 \aliasA{is.nan}{is.na-methods}{is.nan} [2422] [2423] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.isSymmetr ic}) has been already used, duplicate ignored \relax l.7077 ...etric}{isSymmetric-methods}{isSymmetric} [2424] Overfull \hbox (26.39984pt too wide) in paragraph at lines 7124--7124 []\T1/zi4/m/sl/10 isSymmetric(object, checkDN = TRUE, tol = 100 * .Machine$dou ble.eps, tol1 = 8 * tol, ...)[] [2425] [2426] [2427] Underfull \vbox (badness 10000) has occurred while \output is active [2428] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.kronecker }) has been already used, duplicate ignored \relax l.7453 ...kronecker}{kronecker-methods}{kronecker} [2429] [2430] [2431 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.*,ndiMatr ix,Matrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.7725 \item[\code{Dim},\code{Dimnames}:] The dimension (a length-2] Underfull \hbox (badness 2478) in paragraph at lines 7736--7741 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ldenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 7744--7747 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2432] [2433] [2434] Underfull \hbox (badness 10000) in paragraph at lines 7968--7971 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2435] Underfull \hbox (badness 10000) in paragraph at lines 8029--8032 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2436] [2437] [2438] [2439] pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rpcent.* .Rpcent.}) has been already used, duplicate ignored \relax l.8310 ...*\%}{matmult-methods}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod }) has been already used, duplicate ignored \relax l.8384 ...A{crossprod}{matmult-methods}{crossprod} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrosspro d}) has been already used, duplicate ignored \relax l.8460 ...tcrossprod}{matmult-methods}{tcrossprod} [2440] Underfull \hbox (badness 10000) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 signature(x = "dtrMatrix", y = "matrix") []\T1/ptm/m/n/10 and other sig-na-tures (use Underfull \hbox (badness 5359) in paragraph at lines 8618--8623 []\T1/zi4/m/sl/10 showMethods("%*%", class="dtrMatrix")[]\T1/ptm/m/n/10 ): ma-t rix mul-ti-pli-ca-tion. Mul-ti-pli-ca-tion Underfull \hbox (badness 10000) in paragraph at lines 8627--8629 []\T1/zi4/m/sl/10 signature(x = "CsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 8629--8631 []\T1/zi4/m/sl/10 signature(x = "TsparseMatrix", y = "missing") []\T1/ptm/m/n/1 0 re-turns []\T1/zi4/m/sl/10 t(x) %*% x []\T1/ptm/m/n/10 as an [2441] [2442] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det}) has been already used, duplicate ignored \relax l.8856 \aliasA{det}{Matrix-class}{det} [2443] Underfull \hbox (badness 1527) in paragraph at lines 8933--8935 []\T1/zi4/m/sl/10 signature(x = "Matrix")[]\T1/ptm/m/n/10 : sim-ply de-fined as []\T1/zi4/m/sl/10 prod(dim(x)) []\T1/ptm/m/n/10 (and hence of mode Underfull \hbox (badness 4846) in paragraph at lines 8941--8944 []\T1/zi4/m/sl/10 signature(object = "Matrix")[]\T1/ptm/m/n/10 : draws an [][][ ]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 8946--8949 [2444] [2445] [2446] Underfull \hbox (badness 10000) in paragraph at lines 9148--9150 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", logarithm = "missing")[] \T1/ptm/m/n/10 : sets Underfull \hbox (badness 10000) in paragraph at lines 9154--9156 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "NULL")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with Underfull \hbox (badness 10000) in paragraph at lines 9156--9158 []\T1/zi4/m/sl/10 signature(x = "MatrixFactorization", value = "list")[]\T1/ptm /m/n/10 : re-turns []\T1/zi4/m/sl/10 x []\T1/ptm/m/n/10 with [2447] Underfull \hbox (badness 10000) in paragraph at lines 9193--9196 []\T1/ptm/m/n/10 Generic func-tions [][][]\T1/zi4/m/sl/10 expand1[][][] []\T1/p tm/m/n/10 and [][][]\T1/zi4/m/sl/10 expand2[][][] []\T1/ptm/m/n/10 for con-stru ct-ing ma-trix fac-tors from [2448] Underfull \hbox (badness 10000) in paragraph at lines 9311--9313 []\T1/ptm/m/n/10 logical in-di-cat-ing if []\T1/zi4/m/sl/10 X <- (X + t(X))/2 [ ]\T1/ptm/m/n/10 should be done, af-ter []\T1/zi4/m/sl/10 X <- [2449] [2450] Underfull \vbox (badness 10000) has occurred while \output is active [2451] Underfull \hbox (badness 2478) in paragraph at lines 9507--9512 []\T1/ptm/m/n/10 Class []\T1/zi4/m/sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 , di-re ctly. Class []\T1/zi4/m/sl/10 "lMatrix"[]\T1/ptm/m/n/10 , by class []\T1/zi4/m/ sl/10 "ndenseMatrix"[]\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 9515--9518 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ); use, e.g., [2452] [2453] Underfull \hbox (badness 5924) in paragraph at lines 9696--9698 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2454] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.norm}) ha s been already used, duplicate ignored \relax l.9738 \aliasA{norm}{norm-methods}{norm} [2455] [2456] [2457] Underfull \hbox (badness 10000) in paragraph at lines 10031--10034 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2458] Underfull \hbox (badness 10000) in paragraph at lines 10095--10098 []\T1/ptm/m/n/10 Currently, mainly [][][]\T1/zi4/m/sl/10 t[][][]() []\T1/ptm/m/ n/10 and co-er-cion meth-ods (for [][][]\T1/zi4/m/sl/10 as[][][](.)[]\T1/ptm/m/ n/10 ; use, e.g., [2459] [2460] [2461] Underfull \hbox (badness 4242) in paragraph at lines 10295--10298 [][][]\T1/zi4/m/sl/10 pack[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 unp ack[][][][]\T1/ptm/m/n/10 ; its vir-tual "com-ple-ment" []\T1/zi4/m/sl/10 "[][] unpackedMatrix[][][]"[]\T1/ptm/m/n/10 ; its proper sub-classes [2462] Underfull \hbox (badness 3547) in paragraph at lines 10383--10386 []\T1/zi4/m/sl/10 signature(x = "pMatrix", y = "Matrix") []\T1/ptm/m/n/10 and o th-ers listed by []\T1/zi4/m/sl/10 showMethods("%*%", [2463] [2464] [2465] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.10601 \aliasA{qr}{qr-methods}{qr} [2466] [2467] [2468] [2469] Underfull \hbox (badness 7186) in paragraph at lines 10845--10851 []\T1/ptm/m/n/10 for a dense ma-trix, this is the rank of [][][]\T1/zi4/m/sl/10 qr[][][](x, tol, [2470] [2471] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.rcond}) h as been already used, duplicate ignored \relax l.11002 \aliasA{rcond}{rcond-methods}{rcond} [2472] [2473] [2474] [2475] Underfull \hbox (badness 2351) in paragraph at lines 11284--11292 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1509) in paragraph at lines 11284--11292 \T1/ptm/m/n/10 in-dices, if not []\T1/zi4/m/sl/10 symmetric [][]sample.int[][][ ](nrow*ncol, nnz)[]\T1/ptm/m/n/10 , then---if []\T1/zi4/m/sl/10 rand.x []\T1/pt m/m/n/10 is not []\T1/zi4/m/sl/10 NULL[]\T1/ptm/m/n/10 --- [2476] [2477] Underfull \hbox (badness 10000) in paragraph at lines 11441--11444 []\T1/ptm/m/n/10 Class [][][]\T1/zi4/m/sl/10 SchurFactorization[][][][]\T1/ptm/ m/n/10 , di-rectly. Class [][][]\T1/zi4/m/sl/10 MatrixFactorization[][][][]\T1/ ptm/m/n/10 , by class [2478] [2479] [2480] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solve}) h as been already used, duplicate ignored \relax l.11630 \aliasA{solve}{solve-methods}{solve} [2481] Underfull \hbox (badness 5316) in paragraph at lines 11816--11821 []\T1/ptm/m/n/10 Methods for dense []\T1/zi4/m/sl/10 a []\T1/ptm/m/n/10 are bui lt on 14 LA-PACK rou-tines: class []\T1/zi4/m/sl/10 d..Matrix[]\T1/ptm/m/n/10 , where [2482] Underfull \hbox (badness 10000) in paragraph at lines 11916--11919 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2483] Underfull \hbox (badness 10000) in paragraph at lines 11952--11955 []\T1/ptm/m/n/10 character string or []\T1/zi4/m/sl/10 NULL []\T1/ptm/m/n/10 or (co-er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 11963--11967 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2484] [2485] [2486] [2487] [2488] [2489] [2490] [2491] Underfull \hbox (badness 10000) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 (object = "sparseMatrix", uniqT=FALSE)[]\T1/ptm/m/n/10 : Re-t urns an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 12500--12508 []\T1/zi4/m/sl/10 "sparseSummary" []\T1/ptm/m/n/10 which is ba-si-cally a [][][ ]\T1/zi4/m/sl/10 data.frame[][][] []\T1/ptm/m/n/10 with columns []\T1/zi4/m/sl/ 10 (i,j,x) []\T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 signature(from = "factor", to = "sparseMatrix")[]\T1/ptm/m/n/ 10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 12525--12533 []\T1/zi4/m/sl/10 "sparseMatrix" []\T1/ptm/m/n/10 pro-duces the ma-trix of in-d i-ca-tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2492] [2493] [2494] [2495] [2496] Underfull \hbox (badness 5036) in paragraph at lines 12918--12920 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2497] Underfull \hbox (badness 2828) in paragraph at lines 13084--13087 []\T1/zi4/m/sl/10 signature(x = "sparseVector", mode = "character") []\T1/ptm/m /n/10 co-erces sparse vec-tors to Underfull \hbox (badness 2486) in paragraph at lines 13106--13109 []\T1/zi4/m/sl/10 signature(x = "sparseVector") []\T1/ptm/m/n/10 re-peat []\T1/ zi4/m/sl/10 x[]\T1/ptm/m/n/10 , with the same ar-gu-ment list []\T1/zi4/m/sl/10 (x, times, [2498] [2499] [2500] [2501] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[<.Rdash. }) has been already used, duplicate ignored \relax l.13311 ...\Rdash{}}{subassign-methods}{[<.Rdash.} Underfull \hbox (badness 6910) in paragraph at lines 13398--13400 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2502] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.[}) has b een already used, duplicate ignored \relax l.13445 \aliasA{[}{subscript-methods}{[} [2503] [2504] Underfull \hbox (badness 2057) in paragraph at lines 13656--13658 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., Underfull \hbox (badness 10000) in paragraph at lines 13670--13675 []\T1/zi4/m/sl/10 skewpart(x) []\T1/ptm/m/n/10 re-turns a skew-symmetric ma-tri x, in-her-it-ing from [][][]\T1/zi4/m/sl/10 generalMatrix[][][][]\T1/ptm/m/n/10 , [2505] [2506] Underfull \hbox (badness 10000) in paragraph at lines 13826--13831 []\T1/ptm/m/n/10 Note that all []\T1/zi4/m/sl/10 new(.)[]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 spMatrix[][][] []\T1/ptm/m/n/10 and [][][]\T1/zi4/m/sl/10 spar seMatrix[][][](*, repr="T") []\T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 13832--13838 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as []\ T1/zi4/m/sl/10 %*% []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 crossprod []\T1/ptm/m /n/10 are de-fined [2507] [2508] [2509] Overfull \hbox (21.75807pt too wide) in paragraph at lines 14021--14027 []\T1/ptm/m/n/10 GAL lat-tice file `\T1/zi4/m/sl/10 usc_q.GAL\T1/ptm/m/n/10 ' ( re-trieved in 2008 from `\T1/zi4/m/sl/10 http://sal.uiuc.edu/weights/zips/usc.z ip\T1/ptm/m/n/10 ' [2510] [2511] [2512]) (./boot-pkg.tex Chapter 18. [2513] [2514] [2515] [2516] [2517] [2518] [2519] [2520] [2521] [2522] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2523] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2524] Underfull \vbox (badness 10000) has occurred while \output is active [2525] [2526] [2527] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2528] [2529] [2530] [2531] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2532] [2533] [2534] [2535] [2536] [2537] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are []\T1/zi4/m/sl/10 "ordinary" []\T1/ptm/m/n/10 (case re-sam-pling), [2538] [2539] Underfull \vbox (badness 10000) has occurred while \output is active [2540] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2541] [2542] [2543] [2544] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2545] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2546] [2547] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of []\T1/zi4/m /sl/10 n/((n-1)*(n-2)) []\T1/ptm/m/n/10 where []\T1/zi4/m/sl/10 n []\T1/ptm/m/n /10 is the sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if []\T1/zi4/m/sl/10 unbiased []\T1/ptm/m/n/10 is []\T1/zi 4/m/sl/10 FALSE []\T1/ptm/m/n/10 then a mul-ti-plier of []\T1/zi4/m/sl/10 1/n [ ]\T1/ptm/m/n/10 is used. This is mul-ti-plied by [2548] [2549] [2550] [2551] [2552] [2553] [2554] [2555] [2556] [2557] [2558] [2559] [2560] [2561] [2562] [2563] [2564] [2565] [2566] [2567] [2568] [2569] [2570] [2571] [2572] [2573] [2574] [2575] [2576] [2577] [2578] [2579] [2580] [2581] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2582] [2583] [2584] [2585] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2586] [2587] [2588] [2589] [2590] [2591] [2592] [2593] [2594] [2595] [2596] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class []\T1/zi4/m/sl/10 " saddle.distn"[]\T1/ptm/m/n/10 . See the help file for [2597] [2598] [2599] [2600] [2601] [2602] [2603] [2604] [2605] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2606] [2607] [2608] [2609] [2610] [2611] [2612] [2613] [2614] [2615]) (./class-pkg.tex [2616] Chapter 19. [2617] [2618] [2619] [2620] [2621] [2622] [2623] [2624] [2625] [2626] [2627] [2628] [2629] [2630] [2631] [2632]) (./cluster-pkg.tex Chapter 20. [2633] [2634] [2635] [2636] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] Underfull \hbox (badness 1412) in paragraph at lines 782--787 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][][]\T1/zi4/m/sl/10 agnes[][][][] \T1/ptm/m/n/10 ), orig-i-nally. Met-ric []\T1/zi4/m/sl/10 "jaccard"[]\T1/ptm/m/ n/10 : Kamil Ko-zlowski [2645] Underfull \hbox (badness 10000) in paragraph at lines 882--884 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2646] [2647] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2648] [2649] [2650] [2651] [2652] [2653] Underfull \hbox (badness 10000) in paragraph at lines 1474--1477 [2654] [2655] Underfull \hbox (badness 2503) in paragraph at lines 1583--1586 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "hclust" []\T1/ptm/m/n/1 0 or []\T1/zi4/m/sl/10 "twins"[]\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2656] Underfull \hbox (badness 4954) in paragraph at lines 1680--1682 []\T1/ptm/b/n/10 A\T1/ptm/m/n/10 symmetric bi-nary vari-able, aka []\T1/zi4/m/s l/10 "A" []\T1/ptm/m/n/10 in re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2657] Underfull \hbox (badness 7667) in paragraph at lines 1694--1698 []\T1/ptm/b/n/10 I\T1/ptm/m/n/10 nterval scaled -- the \T1/ptm/b/n/10 de-fault \T1/ptm/m/n/10 for all nu-meric Underfull \hbox (badness 10000) in paragraph at lines 1694--1698 \T1/ptm/m/n/10 (incl []\T1/zi4/m/sl/10 integer[]\T1/ptm/m/n/10 ) columns of []\ T1/zi4/m/sl/10 x[]\T1/ptm/m/n/10 , aka []\T1/zi4/m/sl/10 "I" []\T1/ptm/m/n/10 i n re-sult []\T1/zi4/m/sl/10 Types[]\T1/ptm/m/n/10 , see [2658] [2659] Overfull \hbox (5.24408pt too wide) in paragraph at lines 1866--1866 []\T1/zi4/m/n/9 summary(dA123 <- daisy(flowerN)) # .. all 3 logicals treated * A*symmetric binary (w/ warning)[] Overfull \hbox (11.23795pt too wide) in paragraph at lines 1877--1877 []\T1/zi4/m/n/9 ## Still, using Euclidean/Manhattan distance for {0-1} *is* id entical to treating them as "N" :[] [2660] [2661] [2662] [2663] [2664] Underfull \hbox (badness 10000) in paragraph at lines 2212--2215 Underfull \hbox (badness 10000) in paragraph at lines 2223--2229 [][][]\T1/zi4/m/sl/10 predict.ellipsoid[][][] []\T1/ptm/m/n/10 which is also th e [][][]\T1/zi4/m/sl/10 predict[][][] []\T1/ptm/m/n/10 method for []\T1/zi4/m/s l/10 ellipsoid []\T1/ptm/m/n/10 ob-jects. [2665] [2666] [2667] [2668] Underfull \hbox (badness 6675) in paragraph at lines 2457--2459 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2669] [2670] [2671] [2672] [2673] [2674] [2675] [2676] Underfull \hbox (badness 2980) in paragraph at lines 3059--3063 [][][]\T1/zi4/m/sl/10 agnes[][][] []\T1/ptm/m/n/10 for back-ground and ref-er-e nces; [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clara[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 daisy[][][][]\T1/ptm/ m/n/10 , [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [2677] [2678] [2679] [2680] [2681] [2682] Underfull \hbox (badness 1142) in paragraph at lines 3398--3401 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2683] Underfull \hbox (badness 1142) in paragraph at lines 3517--3520 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][][]\T1/zi4/m/sl/10 par[][][][] \T1/ptm/m/n/10 ) may also be sup-plied and are passed to [2684] [2685] [2686] [2687] Underfull \hbox (badness 2582) in paragraph at lines 3740--3745 [][][]\T1/zi4/m/sl/10 partition.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 clusplot.partition[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 clusplot .default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pam[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 pam.object[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 clara[][][][]\T1/ptm/m/n/10 , [2688] Underfull \hbox (badness 2698) in paragraph at lines 3802--3807 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls []\T1/ zi4/m/sl/10 plot([][]as.hclust[][][](x), ...)[]\T1/ptm/m/n/10 , which Underfull \hbox (badness 4792) in paragraph at lines 3802--3807 \T1/ptm/m/n/10 dis-patches to [][][]\T1/zi4/m/sl/10 plot.hclust[][][](..)[]\T1/ ptm/m/n/10 . If more flex-i-ble plots are needed, con-sider []\T1/zi4/m/sl/10 x x <- [2689] Underfull \hbox (badness 10000) in paragraph at lines 3875--3877 []\T1/ptm/m/n/10 Available as `\T1/zi4/m/sl/10 pluton.dat\T1/ptm/m/n/10 ' from the archive of the Uni-ver-sity of Antwer-pen, [2690] [2691] [2692] Underfull \hbox (badness 10000) in paragraph at lines 4089--4091 []\T1/ptm/m/n/10 a []\T1/zi4/m/sl/10 dissimilarity []\T1/ptm/m/n/10 ob-ject or a []\T1/zi4/m/sl/10 summary.dissimilarity []\T1/ptm/m/n/10 one for [2693] [2694] [2695] [2696] Underfull \hbox (badness 2626) in paragraph at lines 4318--4323 []\T1/ptm/m/n/10 arguments passed [][][]\T1/zi4/m/sl/10 barplot[][][]()[]\T1/pt m/m/n/10 ; note that the de-fault used to be []\T1/zi4/m/sl/10 col = [2697] Underfull \hbox (badness 1383) in paragraph at lines 4395--4400 []\T1/ptm/m/n/10 While []\T1/zi4/m/sl/10 silhouette() []\T1/ptm/m/n/10 is \T1/p tm/m/it/10 in-trin-sic \T1/ptm/m/n/10 to the [][][]\T1/zi4/m/sl/10 partition[][ ][] []\T1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2698] [2699] [2700] [2701] [2702] [2703] [2704] [2705] Underfull \hbox (badness 10000) in paragraph at lines 4836--4838 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/sl/10 xclara.dat\T1/ptm/m/n/10 ' in side [2706] [2707]) (./codetools-pkg.tex [2708] Chapter 21. [2709] [2710] [2711] [2712] [2713]) (./foreign-pkg.tex [2714] Chapter 22. Underfull \hbox (badness 10000) in paragraph at lines 33--37 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able as [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 33--37 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2715] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2716] [2717] [2718] [2719] [2720] [2721] [2722] Underfull \hbox (badness 2846) in paragraph at lines 502--511 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer-ent lev- Underfull \hbox (badness 5417) in paragraph at lines 502--511 \T1/ptm/m/n/10 els. For []\T1/zi4/m/sl/10 "append" []\T1/ptm/m/n/10 (the de-fau lt), the first orig-i-nal value la-bel is Underfull \hbox (badness 6001) in paragraph at lines 502--511 \T1/ptm/m/n/10 kept while fur-ther du-pli-cated la-bels are re-named to []\T1/z i4/m/sl/10 paste0(label, [2723] Overfull \hbox (6.73795pt too wide) in paragraph at lines 620--620 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2724] [2725] [2726] Underfull \hbox (badness 10000) in paragraph at lines 808--809 [2727] Underfull \hbox (badness 10000) in paragraph at lines 865--869 []\T1/ptm/m/n/10 SAS Tech-ni-cal Sup-port doc-u-ment TS-140: ``The Record Lay-o ut of Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/ptm/m/n/10 a Data Set in SAS Trans-port (XPORT) For-mat'' avail-able at [][ ]$\T1/zi4/m/sl/10 https : Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 / / support . sas . com / content / dam / SAS / support / en / technical-[]papers / Underfull \hbox (badness 10000) in paragraph at lines 865--869 \T1/zi4/m/sl/10 record-[]layout-[]of-[]a-[]sas-[]version-[]5-[]or-[]6-[]data-[] set-[]in-[]sas-[]transport-[]xport-[]format . [2728] [2729] Underfull \hbox (badness 10000) in paragraph at lines 986--988 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/sl/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2730] [2731] [2732] [2733] Underfull \hbox (badness 10000) in paragraph at lines 1265--1271 []\T1/ptm/m/n/10 The work for this func-tion is done by []\T1/zi4/m/sl/10 forei gn:::writeForeignStata[]\T1/ptm/m/n/10 , [2734] [2735]) (./lattice-pkg.tex [2736] Chapter 23. [2737] Underfull \hbox (badness 1484) in paragraph at lines 114--118 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 114--118 \T1/zi4/m/sl/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2738] [2739] [2740] Underfull \vbox (badness 10000) has occurred while \output is active [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] [2749] [2750] [2751] [2752] [2753] Underfull \hbox (badness 1062) in paragraph at lines 1395--1399 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2754] Underfull \vbox (badness 4805) has occurred while \output is active [2755] Underfull \hbox (badness 1803) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 Lattice[][][] []\T1/ptm/m/n/10 for an overview of the pac k-age, as well as [][][]\T1/zi4/m/sl/10 barchart.table[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.trellis[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1563--1580 [][][]\T1/zi4/m/sl/10 panel.stripplot[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 panel.superpose[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.loess[ ][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 panel.average[][][][]\T1/ptm/m/n/ 10 , [][][]\T1/zi4/m/sl/10 strip.default[][][][]\T1/ptm/m/n/10 , [2756] [2757] Underfull \hbox (badness 3009) in paragraph at lines 1705--1707 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][][]\T1/zi4/m/sl/10 xyplot[ ][][][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1735--1739 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2758] [2759] [2760] [2761] [2762] [2763] Underfull \hbox (badness 10000) in paragraph at lines 2137--2140 []\T1/ptm/m/n/10 When []\T1/zi4/m/sl/10 breaks []\T1/ptm/m/n/10 is un-spec-i-fi ed, the value of [2764] [2765] [2766] [2767] [2768] [2769] [2770] [2771] Underfull \vbox (badness 10000) has occurred while \output is active [2772] [2773] Underfull \hbox (badness 2781) in paragraph at lines 2871--2873 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the []\T1/zi4/m/sl/10 co l.regions []\T1/ptm/m/n/10 ar-gu-ment in [2774] Underfull \hbox (badness 2486) in paragraph at lines 3021--3025 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2775] [2776] [2777] [2778] [2779] [2780] [2781] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.parallel} ) has been already used, duplicate ignored \relax l.3506 \aliasA{parallel}{B\_08\_splom}{parallel} [2782] [2783] Underfull \hbox (badness 2368) in paragraph at lines 3644--3644 []\T1/zi4/m/sl/10 auto.key[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 prepanel[]\T1/pt m/m/n/10 , []\T1/zi4/m/sl/10 scales[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 strip[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 groups[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 x lab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/1 0 ylab[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[]\T1/ptm/m/n/10 , [2784] [2785] [2786] [2787] [2788] Underfull \hbox (badness 5696) in paragraph at lines 3992--3996 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 by spec-i-fy-ing []\T1/zi4/m/sl/10 lattice.options(default.theme = "col.whitebg")[]\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3992--3996 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2789] [2790] [2791] Underfull \hbox (badness 1389) in paragraph at lines 4175--4183 \T1/ptm/m/n/10 based on HCL palettes, but cus-tomiza-tion of the palettes is al -lowed. Ear-lier be-haviour [2792] Underfull \hbox (badness 1173) in paragraph at lines 4251--4255 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4278--4280 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2793] [2794] [2795] Underfull \hbox (badness 3492) in paragraph at lines 4478--4488 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. []\T1/zi4/m/sl/10 col []\T1/ptm/m/n /10 is used for com-po-nents []\T1/zi4/m/sl/10 "plot.symbol"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4503--4506 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 p lot.symbol[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 plot.polygon[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4506--4508 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 and [2796] [2797] [2798] [2799] [2800] [2801] [2802] Underfull \vbox (badness 10000) has occurred while \output is active [2803] [2804] [2805] Underfull \hbox (badness 6157) in paragraph at lines 5232--5235 []\T1/zi4/m/sl/10 plot.shingle []\T1/ptm/m/n/10 dis-plays the ranges of shin-gl es via rect-an-gles. []\T1/zi4/m/sl/10 print.shingle []\T1/ptm/m/n/10 and [2806] [2807] [2808] [2809] [2810] [2811] [2812] Underfull \hbox (badness 10000) in paragraph at lines 5684--5687 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5684--5687 []\T1/zi4/m/sl/10 horizontal=FALSE []\T1/ptm/m/n/10 is use-ful for strips on th e left of pan-els us-ing [2813] [2814] [2815] [2816] [2817] Underfull \hbox (badness 4805) in paragraph at lines 6045--6049 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 For []\T1/zi4/m/sl/10 panel.identify.qqmath[]\T1/ptm/m/n/10 , ex-tra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 6056--6063 []\T1/zi4/m/sl/10 panel.identify[]\T1/ptm/m/n/10 . For []\T1/zi4/m/sl/10 panel. identify[]\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 6056--6063 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For []\T1 /zi4/m/sl/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 6056--6063 []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 trellis.switchFocus[]\T1/ptm/m/n/10 , th ese are used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 6056--6063 [][][]\T1/zi4/m/sl/10 lattice.options[][][][]\T1/ptm/m/n/10 ) for high-light-in g the cho-sen view-port if so re-quested. [2818] [2819] [2820] [2821] Underfull \hbox (badness 4242) in paragraph at lines 6356--6361 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6356--6361 \T1/ptm/m/n/10 ter []\T1/zi4/m/sl/10 plot.polygon []\T1/ptm/m/n/10 is used if t here is no group-ing vari-able, oth-er-wise [2822] [2823] Underfull \hbox (badness 2310) in paragraph at lines 6472--6477 []\T1/ptm/m/n/10 Creates Box and Whisker plot of []\T1/zi4/m/sl/10 x []\T1/ptm/ m/n/10 for ev-ery level of []\T1/zi4/m/sl/10 y []\T1/ptm/m/n/10 (or the other w ay round if [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] Underfull \hbox (badness 3168) in paragraph at lines 7330--7334 []\T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. Use [2836] [2837] [2838] [2839] Underfull \hbox (badness 2012) in paragraph at lines 7601--7604 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2840] [2841] [2842] Underfull \hbox (badness 3333) in paragraph at lines 7808--7810 []\T1/ptm/m/n/10 default colours are ob-tained from []\T1/zi4/m/sl/10 plot.symb ol []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 plot.line []\T1/ptm/m/n/10 us-ing Underfull \hbox (badness 2318) in paragraph at lines 7836--7844 []\T1/zi4/m/sl/10 "spline" []\T1/ptm/m/n/10 adds a cu-bic smooth-ing spline fit (same as [][][]\T1/zi4/m/sl/10 panel.spline[][][][]\T1/ptm/m/n/10 ). [2843] [2844] [2845] [2846] [2847] [2848] [2849] Underfull \hbox (badness 1436) in paragraph at lines 8309--8315 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2850] [2851] [2852] [2853] [2854] [2855] [2856] [2857] Underfull \hbox (badness 10000) in paragraph at lines 8878--8881 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to []\T1/zi4/m/sl/10 panel.supe rpose []\T1/ptm/m/n/10 from Underfull \hbox (badness 1092) in paragraph at lines 8924--8926 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/sl/10 \T1/ptm/m/n/10 ([]\T1/zi4/m/sl/10 panel.superpose.2 []\T1/ptm/m/n/10 orig-i-n ally con- [2858] [2859] [2860] Underfull \hbox (badness 3895) in paragraph at lines 9085--9088 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. []\T1/zi4/m/sl/10 type []\T1/ptm/m/n/10 has a dif-fer-ent mean-ing in Underfull \hbox (badness 6625) in paragraph at lines 9095--9095 []\T1/zi4/m/sl/10 perspective[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 distance[]\T1 /ptm/m/n/10 , []\T1/zi4/m/sl/10 xlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 ylim[] \T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 zlim[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 scr een[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 R.mat[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/ 10 aspect[]\T1/ptm/m/n/10 , [2861] Underfull \hbox (badness 1515) in paragraph at lines 9160--9164 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2862] Underfull \hbox (badness 6316) in paragraph at lines 9266--9271 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in [2863] Underfull \hbox (badness 5908) in paragraph at lines 9283--9286 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by []\T1/zi4/m/sl/10 xscale .components.default []\T1/ptm/m/n/10 and [2864] [2865] [2866] [2867] Underfull \hbox (badness 2418) in paragraph at lines 9574--9578 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing []\T1/z i4/m/sl/10 left, right, left.name, right.name, [2868] [2869] [2870] [2871] [2872] [2873] [2874] Underfull \hbox (badness 2310) in paragraph at lines 10018--10022 []\T1/ptm/m/n/10 Factor with lev-els []\T1/zi4/m/sl/10 "Svansota"[]\T1/ptm/m/n/ 10 , []\T1/zi4/m/sl/10 "No. 462"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Manchuria "[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "No. 475"[]\T1/ptm/m/n/10 , []\T1/zi4/m/s l/10 "Velvet"[]\T1/ptm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 10023--10026 []\T1/ptm/m/n/10 Factor with 6 lev-els: []\T1/zi4/m/sl/10 "Grand Rapids"[]\T1/p tm/m/n/10 , []\T1/zi4/m/sl/10 "Duluth"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Uni versity Farm"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Morris"[]\T1/ptm/m/n/10 , [2875] [2876] [2877] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma} ) has been already used, duplicate ignored \relax l.10249 \aliasA{melanoma}{H\_melanoma}{melanoma} [2878] [2879] [2880] Underfull \hbox (badness 4144) in paragraph at lines 10473--10476 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10473--10476 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/sl /10 https : / / ruralhealth . und . edu / projects / [2881] [2882]) (./mgcv-pkg.tex Chapter 24. [2883] [2884] [2885] Underfull \hbox (badness 1142) in paragraph at lines 185--189 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 210--215 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2886] [2887] [2888] [2889] Underfull \hbox (badness 10000) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 mgcv.parallel[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 mgcv-package[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gamObject[][][][] \T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 , [][][ ]\T1/zi4/m/sl/10 smooth.terms[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 379--386 [][][]\T1/zi4/m/sl/10 linear.functional.terms[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][] [][]predi ct.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.gam[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 summary.gam[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/ m/sl/10 gam.side[][][][]\T1/ptm/m/n/10 , [2890] [2891] [2892] [2893] [2894] [2895] Underfull \hbox (badness 1406) in paragraph at lines 704--705 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2896] [2897] Underfull \hbox (badness 1158) in paragraph at lines 814--816 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion [2898] Underfull \hbox (badness 1259) in paragraph at lines 877--878 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2899] Underfull \vbox (badness 10000) has occurred while \output is active [2900] [2901] [2902] [2903] [2904] [2905] Underfull \hbox (badness 1281) in paragraph at lines 1272--1273 []\T1/zi4/m/sl/10 deviance[]\T1/ptm/m/n/10 ,[]\T1/zi4/m/sl/10 martingale[]\T1/p tm/m/n/10 ,[]\T1/zi4/m/sl/10 score[]\T1/ptm/m/n/10 , or []\T1/zi4/m/sl/10 schoe nfeld []\T1/ptm/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2906] [2907] Underfull \vbox (badness 10000) has occurred while \output is active [2908] Underfull \vbox (badness 10000) has occurred while \output is active [2909] [2910] Underfull \vbox (badness 10000) has occurred while \output is active [2911] [2912] [2913] [2914] [2915] [2916] [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] [2927] [2928] Underfull \hbox (badness 1142) in paragraph at lines 2604--2608 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2929] Underfull \hbox (badness 1043) in paragraph at lines 2630--2636 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2930] [2931] [2932] [2933] [2934] [2935] Underfull \vbox (badness 10000) has occurred while \output is active [2936] Underfull \vbox (badness 10000) has occurred while \output is active [2937] [2938] [2939] [2940] [2941] [2942] [2943] [2944] [2945] [2946] [2947] [2948] [2949] [2950] [2951] [2952] [2953] Underfull \hbox (badness 10000) in paragraph at lines 4071--4075 []\T1/ptm/m/n/10 Random ef-fects can be added to []\T1/zi4/m/sl/10 gam []\T1/pt m/m/n/10 mod-els us-ing []\T1/zi4/m/sl/10 s(...,bs="re") []\T1/ptm/m/n/10 terms (see [2954] [2955] Underfull \vbox (badness 10000) has occurred while \output is active [2956] [2957] [2958] Underfull \hbox (badness 1184) in paragraph at lines 4358--4362 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] [2970] Underfull \hbox (badness 1142) in paragraph at lines 5081--5085 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2971] Underfull \hbox (badness 1231) in paragraph at lines 5185--5187 []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 per-forms poorly with bi-nary data, sin ce it uses PQL. It is bet-ter to use []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 wit h [2972] [2973] [2974] Underfull \vbox (badness 10000) has occurred while \output is active [2975] [2976] [2977] [2978] Underfull \hbox (badness 2181) in paragraph at lines 5626--5627 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2979] [2980] [2981] [2982] [2983] [2984] [2985] [2986] [2987] Underfull \hbox (badness 10000) in paragraph at lines 6130--6131 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by []\T1/zi4/m/sl/10 gam(. ..,fit=FALSE) []\T1/ptm/m/n/10 or [2988] [2989] [2990] [2991] [2992] [2993] [2994] [2995] [2996] [2997] [2998] Underfull \hbox (badness 1142) in paragraph at lines 6715--6719 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2999] [3000] [3001] Underfull \vbox (badness 10000) has occurred while \output is active [3002] [3003] [3004] [3005] Underfull \hbox (badness 1087) in paragraph at lines 7087--7088 []\T1/ptm/m/n/10 If []\T1/zi4/m/sl/10 rho []\T1/ptm/m/n/10 and []\T1/zi4/m/sl/1 0 theta []\T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this case, and if [3006] [3007] [3008] Underfull \vbox (badness 10000) has occurred while \output is active [3009] Underfull \vbox (badness 10000) has occurred while \output is active [3010] [3011] [3012] [3013] [3014] [3015] [3016] [3017] [3018] [3019] [3020] [3021] Underfull \hbox (badness 1242) in paragraph at lines 8046--8047 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [3022] Underfull \hbox (badness 1122) in paragraph at lines 8072--8073 []\T1/ptm/m/n/10 When us-ing [][][]\T1/zi4/m/sl/10 NCV[][][] []\T1/ptm/m/n/10 w ith [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 worth-while per-for-mance im-prove-ments are avail-able by set-ting [3023] [3024] [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] Underfull \hbox (badness 6001) in paragraph at lines 8785--8787 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/sl/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] Underfull \vbox (badness 10000) has occurred while \output is active [3046] [3047] Underfull \hbox (badness 1038) in paragraph at lines 9533--9536 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: []\T1/zi4/m/sl/10 Di m.pdIndot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 coef.pdIdnot[]\T1/ptm/m/n/10 , [] \T1/zi4/m/sl/10 corMatrix.pdIdnot[]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9533--9536 []\T1/zi4/m/sl/10 logDet.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdConstruc t.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFactor.pdIdnot[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdIdnot[]\T1/ptm/m/n/10 , [3048] Underfull \hbox (badness 10000) in paragraph at lines 9589--9592 []\T1/ptm/m/n/10 These func-tions ([]\T1/zi4/m/sl/10 pdTens[]\T1/ptm/m/n/10 , [ ]\T1/zi4/m/sl/10 pdConstruct.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdFacto r.pdTens[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 pdMatrix.pdTens[]\T1/ptm/m/n/10 , [3049] [3050] [3051] [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] Underfull \hbox (badness 1852) in paragraph at lines 10261--10264 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3060] [3061] [3062] Underfull \hbox (badness 1852) in paragraph at lines 10430--10433 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][][]\T1/zi4/m/sl/10 termplot [][][][]\T1/ptm/m/n/10 , if []\T1/zi4/m/sl/10 object []\T1/ptm/m/n/10 pos-sesse s an at-tribute []\T1/zi4/m/sl/10 "para.only" []\T1/ptm/m/n/10 and [3063] [3064] Underfull \vbox (badness 10000) has occurred while \output is active [3065] [3066] Underfull \hbox (badness 1205) in paragraph at lines 10670--10671 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10670--10671 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10676--10681 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3067] Underfull \hbox (badness 1205) in paragraph at lines 10760--10761 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10760--10761 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [3068] [3069] [3070] Underfull \hbox (badness 1253) in paragraph at lines 10959--10961 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [3071] [3072] [3073] [3074] [3075] [3076] Underfull \hbox (badness 4792) in paragraph at lines 11220--11223 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the []\T1/zi4/m/s l/10 paraPen []\T1/ptm/m/n/10 ar-gu-ment to [][][]\T1/zi4/m/sl/10 gam[][][] []\ T1/ptm/m/n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 11220--11223 \T1/ptm/m/n/10 see [][][]\T1/zi4/m/sl/10 gam.models[][][][]\T1/ptm/m/n/10 . If smooth-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [3077] Underfull \hbox (badness 10000) in paragraph at lines 11327--11330 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of []\T1/zi4/m/sl /10 "deviance"[]\T1/ptm/m/n/10 , [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] [3091] Underfull \hbox (badness 3861) in paragraph at lines 12118--12121 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [3092] [3093] Underfull \hbox (badness 1320) in paragraph at lines 12233--12238 \T1/ptm/m/n/10 and []\T1/zi4/m/sl/10 b.orig = D*b.repara []\T1/ptm/m/n/10 (wher e []\T1/zi4/m/sl/10 b.orig []\T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec- tor). If ma- [3094] Underfull \hbox (badness 1975) in paragraph at lines 12339--12344 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [3095] [3096] Underfull \hbox (badness 1762) in paragraph at lines 12428--12440 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][][]\T1/zi4/m/sl/10 tprs[][][] []\T1/ptm/m/n/10 ); []\T1/zi4/m/sl/10 ts.smooth.spec []\T1/ptm/m/n/10 (thin pla te re-gres-sion splines with [3097] [3098] [3099] Underfull \hbox (badness 7667) in paragraph at lines 12640--12646 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use adap-tive smooths of o ne or two vari-ables, spec-i-fied via terms like [3100] Underfull \hbox (badness 10000) in paragraph at lines 12681--12682 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3101] [3102] [3103] [3104] Underfull \vbox (badness 10000) has occurred while \output is active [3105] Underfull \hbox (badness 10000) in paragraph at lines 12958--12960 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3106] [3107] Underfull \hbox (badness 10000) in paragraph at lines 13088--13089 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3108] [3109] [3110] Underfull \hbox (badness 1436) in paragraph at lines 13224--13231 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) []\T1/zi4/m/sl/10 gamm []\T1/ptm/m/n/10 only al-lows one [3111] [3112] Underfull \hbox (badness 10000) in paragraph at lines 13323--13324 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] Underfull \hbox (badness 10000) in paragraph at lines 13924--13930 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13924--13930 []\T1/zi4/m/sl/10 s(...,bs="so",xt=list(bnd=bnd,...)) []\T1/ptm/m/n/10 term in a []\T1/zi4/m/sl/10 gam []\T1/ptm/m/n/10 for-mula. Note [3123] [3124] [3125] Underfull \vbox (badness 10000) has occurred while \output is active [3126] Underfull \vbox (badness 10000) has occurred while \output is active [3127] [3128] Underfull \hbox (badness 10000) in paragraph at lines 14268--14269 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3129] [3130] [3131] [3132] Overfull \hbox (35.26862pt too wide) in paragraph at lines 14480--14480 []\T1/zi4/m/n/9 b <- gam(y ~ s(x)+s(f1,x,bs="sz")+s(f2,x,bs="sz")+s(f1,f2,x,bs ="sz",id=1),data=dat,method="REML")[] [3133] [3134] Underfull \hbox (badness 3895) in paragraph at lines 14626--14629 [][][]\T1/zi4/m/sl/10 gam[][][] []\T1/ptm/m/n/10 can use isotropic smooths of a ny num-ber of vari-ables, spec-i-fied via terms like [3135] Underfull \hbox (badness 10000) in paragraph at lines 14671--14673 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3136] [3137] [3138] [3139] [3140] Underfull \hbox (badness 1371) in paragraph at lines 14951--14957 []\T1/zi4/m/sl/10 bs="ad" []\T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-ti ve smooths are avail-able (see Underfull \hbox (badness 10000) in paragraph at lines 14962--14964 []\T1/zi4/m/sl/10 bs="fs" []\T1/ptm/m/n/10 A spe-cial smoother class (see Underfull \hbox (badness 1132) in paragraph at lines 14962--14964 [][][]\T1/zi4/m/sl/10 smooth.construct.fs.smooth.spec[][][][]\T1/ptm/m/n/10 ) i s avail-able for the case in which a smooth is [3141] Underfull \hbox (badness 6461) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 s[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 te[][][][ ]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 t2[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 tprs[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Duchon.spline[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cubic.regression.spline[][][][]\T1/pt m/m/n/10 , [][][]\T1/zi4/m/sl/10 p.spline[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4 /m/sl/10 d.spline[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 mrf[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 soap[][ ][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Spherical.Spline[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 adaptive.smooth[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 user.defined.smooth[][][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14996--15000 [][][]\T1/zi4/m/sl/10 smooth.construct.re.smooth.spec[][][][]\T1/ptm/m/n/10 , [ ][][]\T1/zi4/m/sl/10 smooth.construct.gp.smooth.spec[][][][]\T1/ptm/m/n/10 , [3142] [3143] [3144] [3145] Underfull \hbox (badness 2326) in paragraph at lines 15200--15207 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][][]\T1/zi4/m/sl/10 smooth.construct[][][] []\T1/ptm/m/n/10 and [3146] Underfull \hbox (badness 2158) in paragraph at lines 15285--15285 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3147] [3148] [3149] [3150] [3151] [3152] [3153] [3154] [3155] [3156] [3157] Underfull \vbox (badness 10000) has occurred while \output is active [3158] [3159] [3160] [3161] [3162] [3163] [3164] [3165] [3166] [3167] [3168] [3169] [3170] [3171] Overfull \hbox (21.42029pt too wide) in paragraph at lines 16847--16847 []\T1/zi4/m/sl/10 vcov(object, sandwich=FALSE, freq = FALSE, dispersion = NULL ,unconditional=FALSE, ...)[] [3172] [3173] [3174] Underfull \hbox (badness 1796) in paragraph at lines 16960--16963 []\T1/ptm/m/n/10 other op-tions to pass on to [][][]\T1/zi4/m/sl/10 persp[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 image[][][] []\T1/ptm/m/n/10 or [][][] \T1/zi4/m/sl/10 contour[][][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183]) (./nlme-pkg.tex [3184] Chapter 25. [3185] [3186] [3187] [3188] [3189] [3190] [3191] [3192] [3193] [3194] [3195] [3196] [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] [3205] [3206] [3207] [3208] [3209] [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] Underfull \hbox (badness 10000) in paragraph at lines 2252--2258 [][][]\T1/zi4/m/sl/10 ACF.lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 cor ARMA[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/ n/10 , [][][]\T1/zi4/m/sl/10 Dim.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [3219] [3220] [3221] [3222] [3223] [3224] [3225] [3226] [3227] [3228] [3229] [3230] [3231] [3232] [3233 pdfTeX warning (ext4): destination with the same identifier (name{Rfn.corMatrix .corCompSymm}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box \__shipout_drop_firstpage_... l.3186 ] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] Underfull \hbox (badness 1067) in paragraph at lines 4411--4416 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] Underfull \hbox (badness 10000) in paragraph at lines 5157--5161 [][][]\T1/zi4/m/sl/10 getCovariate.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/ zi4/m/sl/10 getCovariate.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/ 10 getCovariate.varFunc[][][][]\T1/ptm/m/n/10 , [3264] [3265] [3266] [3267] [3268] [3269] [3270] Underfull \hbox (badness 10000) in paragraph at lines 5591--5594 [][][]\T1/zi4/m/sl/10 getGroupsFormula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 getGroups.data.frame[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGro ups.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroups.lmList[][][][]\ T1/ptm/m/n/10 , [3271] [3272] [3273] [3274] [3275] [3276] [3277] Underfull \hbox (badness 10000) in paragraph at lines 5972--5977 [][][]\T1/zi4/m/sl/10 getGroupsFormula.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 getGroupsFormula.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 getGroupsFormula.lme[][][][]\T1/ptm/m/n/10 , [3278] [3279] [3280] [3281] Underfull \hbox (badness 1490) in paragraph at lines 6247--6258 [][][]\T1/zi4/m/sl/10 corClasses[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsObject[][][][]\T1/p tm/m/n/10 , [][][]\T1/zi4/m/sl/10 glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 plot.gls[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 predict.gls[] [][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 qqnorm.gls[][][][]\T1/ptm/m/n/10 , [3282] Underfull \hbox (badness 10000) in paragraph at lines 6311--6313 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3283] [3284] [3285] [3286] [3287] [3288] Underfull \hbox (badness 10000) in paragraph at lines 6720--6722 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3289] [3290] [3291] [3292] Underfull \hbox (badness 10000) in paragraph at lines 6989--6996 [][][]\T1/zi4/m/sl/10 formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gap ply[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 gsummary[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plo t.nffGroupedData[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.nfnGroupedD ata[][][][]\T1/ptm/m/n/10 , [3293] [3294] [3295] [3296] Underfull \hbox (badness 10000) in paragraph at lines 7249--7254 [][][]\T1/zi4/m/sl/10 Initialize.corStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Initialize.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 In itialize.glsStruct[][][][]\T1/ptm/m/n/10 , [3297] [3298] [3299] [3300] [3301] [3302] [3303] [3304] [3305] [3306] [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] Underfull \hbox (badness 10000) in paragraph at lines 8531--8533 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3316] [3317] [3318] [3319] [3320] Underfull \hbox (badness 10000) in paragraph at lines 8816--8823 [][][]\T1/zi4/m/sl/10 lm[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lme.lmLi st[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.lmList[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 pooledSD[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl /10 predict.lmList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 residuals.lmLi st[][][][]\T1/ptm/m/n/10 , [3321] [3322] [3323] [3324] [3325] [3326] [3327] [3328] Underfull \hbox (badness 10000) in paragraph at lines 9337--9344 [][][]\T1/zi4/m/sl/10 lme[][][][]\T1/ptm/m/n/10 ,[][][]\T1/zi4/m/sl/10 gls[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik.corStruct[][][][]\T1/ptm/m/n/1 0 , [][][]\T1/zi4/m/sl/10 logLik.glsStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 logLik.lmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 logLik .lmList[][][][]\T1/ptm/m/n/10 , [3329] [3330] [3331] [3332] [3333] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9699 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Matrix.1} ) has been already used, duplicate ignored \relax l.9699 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3334] [3335] [3336] [3337] [3338] [3339] [3340] [3341] [3342] [3343] [3344] [3345] Underfull \hbox (badness 1596) in paragraph at lines 10476--10502 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3346] [3347] Underfull \hbox (badness 1490) in paragraph at lines 10592--10598 [][][]\T1/zi4/m/sl/10 nlmeControl[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlme.nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlmeObject[][][][]\ T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 nlsList[][][][]\T1/ptm/m/n/10 , [][][]\T1 /zi4/m/sl/10 nlmeStruct[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 pdClasses [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 reStruct[][][][]\T1/ptm/m/n/10 , [3348] [3349] [3350] Underfull \hbox (badness 10000) in paragraph at lines 10833--10835 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3351] [3352] [3353] [3354] [3355] [3356] [3357] [3358] [3359] [3360] [3361] [3362] [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391] [3392] [3393] Underfull \hbox (badness 1286) in paragraph at lines 13736--13743 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If []\T1/zi4/m/ sl/10 TRUE []\T1/ptm/m/n/10 and ei-ther []\T1/zi4/m/sl/10 inner []\T1/ptm/m/n/1 0 or [3394] [3395] [3396] [3397] [3398] [3399] [3400] [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411] [3412] [3413] [3414] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects}) has been already used, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.random.ef fects.1}) has been already used, duplicate ignored \relax l.15179 ...Extract Random Effects}{random.effects} [3415] [3416] [3417] [3418] [3419] [3420] [3421] [3422] [3423] [3424] [3425] [3426] Underfull \hbox (badness 1067) in paragraph at lines 15932--15937 \T1/ptm/m/n/10 ma-trix), []\T1/zi4/m/sl/10 fitted []\T1/ptm/m/n/10 (fit-ted val -ues), and []\T1/zi4/m/sl/10 residuals []\T1/ptm/m/n/10 (resid-u-als). De-fault s to [3427] [3428] [3429] [3430] Underfull \hbox (badness 1448) in paragraph at lines 16175--16184 \T1/ptm/m/n/10 Op-tions in-clude []\T1/zi4/m/sl/10 "response" []\T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3431] [3432] [3433] [3434] [3435] [3436] [3437] [3438] [3439] [3440] Underfull \hbox (badness 1728) in paragraph at lines 16878--16881 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3441] [3442] [3443] [3444] Underfull \hbox (badness 8056) in paragraph at lines 17212--17221 \T1/zi4/m/sl/10 Symmetry" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdCompSymm[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Diagonal" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl /10 pdDiag[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17212--17221 \T1/zi4/m/sl/10 an Identity" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdIdent[]\T 1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite, Natural Underfull \hbox (badness 5756) in paragraph at lines 17212--17221 \T1/zi4/m/sl/10 Parametrization" []\T1/ptm/m/n/10 for []\T1/zi4/m/sl/10 pdNatur al[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "General Positive-Definite" []\T1/ptm/m/ n/10 for [3445] [3446] [3447] [3448] [3449] Underfull \hbox (badness 10000) in paragraph at lines 17534--17542 [][][]\T1/zi4/m/sl/10 varComb[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 var ConstPower[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varConstProp[][][][]\T 1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/z i4/m/sl/10 varFixed[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varIdent[][][ ][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 varPower[][][][]\T1/ptm/m/n/10 , [3450] [3451] [3452] [3453] [3454] [3455] [3456] [3457] [3458] [3459] [3460] Underfull \hbox (badness 10000) in paragraph at lines 18244--18254 [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/ sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram .corLin[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corRatio[][][][ ]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 18244--18254 [][][]\T1/zi4/m/sl/10 Variogram.corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi 4/m/sl/10 Variogram.corSpher[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Vari ogram.default[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.gls[][][] []\T1/ptm/m/n/10 , [3461] [3462] [3463] [3464] [3465] Underfull \hbox (badness 5036) in paragraph at lines 18568--18577 [][][]\T1/zi4/m/sl/10 corSpatial[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.default[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corExp[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 Variogram.corGaus[][][][]\T1/ptm/m/n/10 , [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476] [3477] [3478]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom. 1}) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3479] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm []\T1/zi4/m/sl/10 response ~ [3480] [3481] [3482] [3483] [3484] [3485] [3486]) (./rpart-pkg.tex Chapter 27. [3487] [3488] [3489] [3490] [3491] [3492] [3493] [3494] [3495] [3496] Underfull \hbox (badness 10000) in paragraph at lines 771--775 []\T1/ptm/m/n/10 Logical. If []\T1/zi4/m/sl/10 TRUE []\T1/ptm/m/n/10 (de-fault) , adds to the la-bel Underfull \hbox (badness 1348) in paragraph at lines 771--775 \T1/zi4/m/sl/10 #events level1/ #events level2/ \T1/ptm/m/n/10 etc. for method []\T1/zi4/m/sl/10 class[]\T1/ptm/m/n/10 , \T1/zi4/m/sl/10 n \T1/ptm/m/n/10 for [3497] [3498] [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515]) (./spatial-pkg.tex [3516] Chapter 28. [3517] [3518] [3519] [3520] [3521] [3522] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] [3534] [3535]) (./survival-pkg.tex [3536] Chapter 29. [3537] [3538] [3539] [3540] Underfull \hbox (badness 6412) in paragraph at lines 284--286 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3541] [3542] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml}) has been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.aml.1}) h as been already used, duplicate ignored \relax l.384 ... Myelogenous Leukemia survival data}{aml} [3543] [3544] [3545] [3546] [3547] [3548] [3549] [3550] [3551] [3552] [3553] [3554] Underfull \hbox (badness 1097) in paragraph at lines 1205--1207 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3555] [3556] [3557] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) h as been already used, duplicate ignored \relax l.1407 ...erapy for Stage B/C colon cancer}{colon} [3558] Underfull \hbox (badness 3679) in paragraph at lines 1455--1459 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by []\T1/zi4/m/sl/10 table(colon$nodes, [3559] [3560] [3561] [3562] [3563] [3564] [3565] [3566] [3567] [3568] Underfull \hbox (badness 3250) in paragraph at lines 2143--2158 \T1/ptm/m/n/10 ing guides and prepend []\T1/zi4/m/sl/10 survival:: []\T1/ptm/m/ n/10 onto ev-er-thing, in-clud-ing the spe-cial terms, e.g., Underfull \hbox (badness 10000) in paragraph at lines 2143--2158 []\T1/zi4/m/sl/10 survival::coxph(survival:Surv(time, status) ~ age + survival: :cluster(inst), [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576] [3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587] [3588] [3589] [3590] Underfull \hbox (badness 1389) in paragraph at lines 3663--3665 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3591] [3592] [3593] [3594] Overfull \hbox (467.89665pt too wide) in alignment at lines 3949--3949 [] [] [3595] [3596] [3597] [3598] [3599] [3600] [3601] [3602] [3603] [3604] [3605] [3606] [3607] [3608] [3609] [3610] [3611] [3612] [3613] [3614] [3615] [3616] [3617] [3618] [3619] [3620] Underfull \hbox (badness 5274) in paragraph at lines 5718--5720 []\T1/ptm/m/n/10 an ob-ject of class []\T1/zi4/m/sl/10 "summary.survfit"[]\T1/p tm/m/n/10 , which is the re-sult of the [3621] [3622] [3623] [3624] [3625] [3626] [3627] [3628] [3629] [3630] [3631] [3632] [3633] [3634] [3635] [3636] [3637] [3638] Underfull \hbox (badness 1281) in paragraph at lines 6986--6989 []\T1/ptm/m/n/10 type of resid-u-als, with choices of []\T1/zi4/m/sl/10 "respon se"[]\T1/ptm/m/n/10 , []\T1/zi4/m/sl/10 "deviance"[]\T1/ptm/m/n/10 , []\T1/zi4/ m/sl/10 "dfbeta"[]\T1/ptm/m/n/10 , [3639] [3640] [3641] [3642] [3643] [3644] [3645] [3646] [3647] pdfTeX warning (ext4): destination with the same identifier (name{Rfn.solder}) has been already used, duplicate ignored \relax l.7569 ...ata from a soldering experiment}{solder} [3648] [3649] [3650] [3651] [3652] [3653] [3654] [3655] [3656] [3657] [3658] [3659] [3660] [3661] [3662] [3663] [3664] [3665] [3666] [3667] [3668] [3669] [3670] Underfull \hbox (badness 1038) in paragraph at lines 9202--9208 []\T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre -dicted sur-vival [3671] [3672] [3673] [3674] [3675] Underfull \hbox (badness 10000) in paragraph at lines 9560--9565 [][][]\T1/zi4/m/sl/10 survfit.formula[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/s l/10 survfit.coxph[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 survfit.object [][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n /10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][][]\T1/ptm/m/n/10 , [3676] [3677] [3678] [3679] [3680] Underfull \hbox (badness 4441) in paragraph at lines 9950--9960 []\T1/ptm/m/n/10 by de-fault, the surv-fit rou-tines only re-turn in-for-ma-tio n at the [3681] [3682] Underfull \hbox (badness 1490) in paragraph at lines 10125--10134 [][][]\T1/zi4/m/sl/10 survfit.coxph[][][] []\T1/ptm/m/n/10 for sur-vival curves from Cox mod-els, [][][]\T1/zi4/m/sl/10 survfit.object[][][] []\T1/ptm/m/n/10 for a de-scrip-tion Underfull \hbox (badness 2213) in paragraph at lines 10125--10134 \T1/ptm/m/n/10 of the com-po-nents of a surv-fit ob-ject, [][][]\T1/zi4/m/sl/10 print.survfit[][][][]\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 plot.survfit[][][] []\T1/ptm/m/n/10 , [][][]\T1/zi4/m/sl/10 lines.survfit[][][][]\T1/ptm/m/n/10 , [3683] [3684] [3685] [3686] [3687] [3688] [3689] Underfull \hbox (badness 1354) in paragraph at lines 10623--10627 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3690] [3691] [3692] [3693] [3694] [3695] [3696] [3697] [3698] [3699] [3700] [3701] [3702] [3703] [3704] [3705] [3706] [3707] [3708] [3709] [3710] [3711] [3712] [3713]) [3714] (./fullrefman.ind [3715] [3716] [3717] [3718] [3719] [3720] [3721] [3722] [3723] [3724] [3725] [3726] [3727] [3728] [3729] [3730] [3731] [3732] [3733] [3734] [3735] [3736] [3737] [3738] [3739] [3740] [3741] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2898--2900 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3742] [3743] [3744] [3745] [3746] [3747] [3748] Overfull \hbox (8.3567pt too wide) in paragraph at lines 3550--3552 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3749] [3750] [3751] [3752] [3753] [3754] [3755] [3756] [3757] [3758] [3759] Overfull \hbox (5.8567pt too wide) in paragraph at lines 4955--4957 []\T1/zi4/m/it/10 [,Matrix,lMatrix,missing,missing-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 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wide) in paragraph at lines 5497--5499 []\T1/zi4/m/it/10 %&%,RsparseMatrix,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5499--5501 []\T1/zi4/m/it/10 %&%,RsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5503--5505 []\T1/zi4/m/it/10 %&%,RsparseMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5509--5511 []\T1/zi4/m/it/10 %&%,TsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5511--5513 []\T1/zi4/m/it/10 %&%,TsparseMatrix,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5513--5515 []\T1/zi4/m/it/10 %&%,TsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5517--5519 []\T1/zi4/m/it/10 %&%,TsparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5537--5539 []\T1/zi4/m/it/10 %&%,diagonalMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5539--5541 []\T1/zi4/m/it/10 %&%,diagonalMatrix,RsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 5541--5543 []\T1/zi4/m/it/10 %&%,diagonalMatrix,TsparseMatrix-method [3764] Overfull \hbox (10.8567pt too wide) in paragraph at lines 5545--5547 []\T1/zi4/m/it/10 %&%,diagonalMatrix,diagonalMatrix-method [3765] Overfull \hbox (15.01662pt too wide) in paragraph at lines 5815--5817 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3766] Overfull \hbox (20.8567pt too wide) in paragraph at lines 5969--5971 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseVector-method [3767] Overfull \hbox (10.8567pt too wide) in paragraph at lines 6222--6224 []\T1/zi4/m/it/10 Arith,CsparseMatrix,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 6230--6232 []\T1/zi4/m/it/10 Arith,ddenseMatrix,sparseVector-method [3768] Overfull \hbox (10.8567pt too wide) in paragraph at lines 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(15.01662pt too wide) in paragraph at lines 7031--7033 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3772] [3773] [3774] [3775] [3776] [3777] [3778] [3779] Overfull \hbox (30.8567pt too wide) in paragraph at lines 8535--8537 []\T1/zi4/m/it/10 coerce,diagonalMatrix,symmetricMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 8537--8539 []\T1/zi4/m/it/10 coerce,diagonalMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8557--8559 []\T1/zi4/m/it/10 coerce,generalMatrix,packedMatrix-method [3780] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8703--8705 []\T1/zi4/m/it/10 coerce,matrix.coo,CsparseMatrix-method [3781] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8711--8713 []\T1/zi4/m/it/10 coerce,matrix.coo,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8715--8717 []\T1/zi4/m/it/10 coerce,matrix.coo,TsparseMatrix-method Overfull 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coerce,sparseVector,TsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8787--8789 []\T1/zi4/m/it/10 coerce,sparseVector,unpackedMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8789--8791 []\T1/zi4/m/it/10 coerce,sparseVector,zsparseVector-method [3782] Overfull \hbox (20.8567pt too wide) in paragraph at lines 8963--8965 []\T1/zi4/m/it/10 Compare,CsparseMatrix,CsparseMatrix-method [3783] Overfull \hbox (40.8567pt too wide) in paragraph at lines 8995--8997 []\T1/zi4/m/it/10 Compare,triangularMatrix,diagonalMatrix-method [3784] [3785] Overfull \hbox (30.8567pt too wide) in paragraph at lines 9532--9534 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,CsparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 9534--9536 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,denseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9536--9538 []\T1/zi4/m/it/10 crossprod,CsparseMatrix,diagonalMatrix-method Overfull \hbox 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crossprod,denseMatrix,TsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9564--9566 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,CsparseMatrix-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 9566--9568 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,denseMatrix-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 9568--9570 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,diagonalMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 9570--9572 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,matrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 9572--9574 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,missing-method [3786] Overfull \hbox (35.8567pt too wide) in paragraph at lines 9574--9576 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,RsparseMatrix-method Overfull \hbox (35.8567pt too wide) in paragraph at lines 9576--9578 []\T1/zi4/m/it/10 crossprod,diagonalMatrix,TsparseMatrix-method Overfull \hbox (0.8567pt too wide) 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crossprod,vector,diagonalMatrix-method [3787] Overfull \hbox (15.01662pt too wide) in paragraph at lines 9711--9713 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9775--9777 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.cr.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9780--9782 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ps.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 9789--9791 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3788] Overfull \hbox (5.8567pt too wide) in paragraph at lines 10150--10152 []\T1/zi4/m/it/10 determinant,BunchKaufman,logical-method [3789] Overfull \hbox (15.8567pt too wide) in paragraph at lines 10166--10168 []\T1/zi4/m/it/10 determinant,diagonalMatrix,logical-method Overfull \hbox (40.8567pt too wide) in paragraph at lines 10188--10190 []\T1/zi4/m/it/10 determinant,MatrixFactorization,missing-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 10190--10192 []\T1/zi4/m/it/10 determinant,pBunchKaufman,logical-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 10202--10204 []\T1/zi4/m/it/10 determinant,triangularMatrix,logical-method [3790] [3791] Overfull \hbox (20.8567pt too wide) in paragraph at lines 10580--10582 []\T1/zi4/m/it/10 dimnames<-,MatrixFactorization,list-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 10582--10584 []\T1/zi4/m/it/10 dimnames<-,MatrixFactorization,NULL-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 10584--10586 []\T1/zi4/m/it/10 dimnames<-,symmetricMatrix,list-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 10586--10588 []\T1/zi4/m/it/10 dimnames<-,symmetricMatrix,NULL-method [3792] Overfull \hbox (15.01662pt too wide) in paragraph at lines 10935--10937 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Transcript written on fullrefman.log. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' + /usr/bin/make -O -j16 V=1 VERBOSE=1 info make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-data.texi make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-FAQ.texi make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-admin.texi make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-lang.texi make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-ints.texi make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-intro.texi R-intro.texi:142: warning: node up pointer for `Introduction and preliminaries' is `Top' but up is `Preface' in menu R-intro.texi:791: warning: node up pointer for `Generating regular sequences' is `Simple manipulations numbers and vectors' but up is `Vector arithmetic' in menu R-intro.texi:1695: warning: node up pointer for `Index matrices' is `Arrays and matrices' but up is `Array indexing' in menu R-intro.texi:1787: warning: node up pointer for `The array() function' is `Arrays and matrices' but up is `Array indexing' in menu R-intro.texi:2835: warning: node up pointer for `The scan() function' is `Reading data from files' but up is `The read.table() function' in menu R-intro.texi:3916: warning: node next pointer for `Scope' is `Customizing the environment' but next is `Object orientation' in menu R-intro.texi:3916: warning: node up pointer for `Scope' is `Writing your own functions' but up is `Recursive numerical integration' in menu R-intro.texi:4100: warning: node prev pointer for `Object orientation' is `Customizing the environment' but prev is `Scope' in menu R-intro.texi:4100: warning: node up pointer for `Object orientation' is `Writing your own functions' but up is `Recursive numerical integration' in menu make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I. R-exts.texi make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.yu3g9r + umask 022 + cd /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + '[' 1 -eq 1 ']' + '[' /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT '!=' / ']' + rm -rf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT ++ dirname /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT + mkdir -p /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + mkdir /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd R-4.4.2 + '[' 1 -eq 1 ']' + /usr/bin/make install DESTDIR=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT 'INSTALL=/usr/bin/install -p' install-info mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/m4' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/m4' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tools' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tools' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc' installing doc ... mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/man/man1 make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/html' installing doc/html ... mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/html make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/html' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' installing doc/manual ... mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/manual mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/manual/images make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/etc' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/etc installing etc ... make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/etc' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/share' installing share ... mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/R mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/dictionaries mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/encodings mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/java mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/licenses mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/make mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/Rd mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/Rd/macros mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/sh mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/texmf mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/texmf/bibtex/bib mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/texmf/bibtex/bst mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/texmf/tex/latex make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/share' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/scripts' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/bin mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/bin make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/scripts' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/include make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include/R_ext' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/include/R_ext make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include/R_ext' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/blas' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/tre' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/tre' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/tzone' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/tzone' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/xdr' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/intl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra/intl' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/extra' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/appl' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -DR_HOME='"/usr/lib64/R"' \ -o Rscript ./Rscript.c mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/pkgconfig make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/unix' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/bin/exec make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/lib make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/main' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/modules make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/internet' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/lapack' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules/X11' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/modules' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library installing packages ... building HTML index ... make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/library' make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/info /usr/bin/install -p -m 644 "./dir" "/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/info" installing R info pages ... updating '/usr/share/info/dir' ... you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually you need to adjust /usr/share/info/dir manually make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/doc/manual' + pushd src/nmath/standalone ~/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/nmath/standalone ~/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2 + echo 'warning: %makeinstall is deprecated, try %make_install instead' warning: %makeinstall is deprecated, try %make_install instead + /usr/bin/make prefix=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr exec_prefix=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr bindir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/bin sbindir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/sbin sysconfdir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/etc datadir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share includedir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/include libdir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64 libexecdir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/libexec localstatedir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/var sharedstatedir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/var/lib mandir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/man infodir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/info install includedir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/include libdir=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64 mkdir -p -- /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/include make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/src/include' + popd ~/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2 + mv doc/manual/R-FAQ.pdf doc/manual/R-admin.pdf doc/manual/R-data.pdf doc/manual/R-exts.pdf doc/manual/R-intro.pdf doc/manual/R-ints.pdf doc/manual/R-lang.pdf doc/manual/fullrefman.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2 + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-admin.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/manual/R-admin.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-data.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/manual/R-data.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/refman.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/manual/refman.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-exts.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/manual/R-exts.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-FAQ.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/manual/R-FAQ.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-intro.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/manual/R-intro.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-lang.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/manual/R-lang.pdf + rm -rf '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/*/latex/' + for i in /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/bin/R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/bin/R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT||g' /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/bin/R + for i in /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/bin/R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/bin/R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT||g' /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/bin/R + for i in /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/bin/R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/bin/R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT||g' /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/pkgconfig/libR.pc + for i in /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/bin/R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/bin/R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT||g' /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/pkgconfig/libRmath.pc + rm -f /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/html/function.html + rm -f /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/html/packages.html + rm -f /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/doc/html/search/index.txt + chmod 644 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch01.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch02.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch03.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch04.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch05.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch06.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch07.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch08.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch09.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch10.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch11.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch12.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch13.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch14.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch15.R /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/library/MASS/scripts/ch16.R + chmod 755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/sh/echo.sh + mkdir -p /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/applications + cat + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/16x16/apps + convert -scale 16x16 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/16x16/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/22x22/apps + convert -scale 22x22 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/22x22/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/24x24/apps + convert -scale 24x24 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/24x24/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/32x32/apps + convert -scale 32x32 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/32x32/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/48x48/apps + convert -scale 48x48 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/48x48/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/64x64/apps + convert -scale 64x64 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/64x64/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/96x96/apps + convert -scale 96x96 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/96x96/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/128x128/apps + convert -scale 128x128 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/128x128/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/192x192/apps + convert -scale 192x192 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/192x192/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/256x256/apps + convert -scale 256x256 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/256x256/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/512x512/apps + convert -scale 512x512 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.png /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/512x512/apps/Rlogo.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + /usr/bin/install -d -m755 /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/scalable/apps + /usr/bin/install -m644 /home/pterjan/rpmbuild/SOURCES/Rlogo-4.4.2.svg /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/icons/hicolor/scalable/apps/Rlogo.svg + rm -f /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/info/dir '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/info/dir.old*' + rm -rf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/perl/File + rm -rf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/share/perl/Text + mkdir -p /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/etc/bash_completion.d + cp /home/pterjan/rpmbuild/SOURCES/R.bash_completion /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/etc/bash_completion.d/R-base + /usr/bin/find-debuginfo -j16 --strict-build-id -m -i --build-id-seed 4.4.2-3.mga10 --unique-debug-suffix -4.4.2-3.mga10.x86_64 --unique-debug-src-base R-base-4.4.2-3.mga10.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2 find-debuginfo: starting Extracting debug info from 33 files DWARF-compressing 33 files sepdebugcrcfix: Updated 33 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-base-4.4.2-3.mga10.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + '[' -n '' ']' + /usr/share/spec-helper/clean_files + '[' -n '' ']' + /usr/share/spec-helper/compress_files .xz + '[' -n '' ']' + /usr/share/spec-helper/relink_symlinks + '[' -n '' ']' + /usr/share/spec-helper/clean_perl + '[' -n '' ']' + /usr/share/spec-helper/lib_symlinks + '[' -n '' ']' + /usr/share/spec-helper/gprintify + '[' -n '' ']' + /usr/share/spec-helper/fix_mo + '[' -n '' ']' + /usr/share/spec-helper/fix_pamd + '[' -n '' ']' + /usr/share/spec-helper/remove_info_dir + '[' -n '' ']' + /usr/share/spec-helper/fix_eol + '[' -n '' ']' + /usr/share/spec-helper/check_desktop_files + '[' -n '' ']' + /usr/share/spec-helper/check_elf_files + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/brp-remove-la-files + /usr/bin/true + env -u SOURCE_DATE_EPOCH /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j16 + /usr/lib/rpm/redhat/brp-python-hardlink Reading /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.146cZ5 + umask 022 + cd /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd R-4.4.2 + '[' 1 -eq 1 ']' + TZ=Europe/Paris + LC_ALL=C + make check make[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests/Examples' Testing examples for package 'base' Testing examples for package 'tools' comparing 'tools-Ex.Rout' to 'tools-Ex.Rout.save' ... OK Testing examples for package 'utils' Testing examples for package 'grDevices' comparing 'grDevices-Ex.Rout' to 'grDevices-Ex.Rout.save' ... OK Testing examples for package 'graphics' comparing 'graphics-Ex.Rout' to 'graphics-Ex.Rout.save' ... OK Testing examples for package 'stats' comparing 'stats-Ex.Rout' to 'stats-Ex.Rout.save' ... NOTE 7529,7530c7529,7530 < Fisher's Exact Test for Count Data hybrid using asym.chisq. iff < (exp=5, perc=80, Emin=1) --- > Fisher's Exact Test for Count Data hybrid using asym.chisq. iff (exp=5, > perc=80, Emin=1) 14219,14220c14219 < 4-sample test for equality of proportions without continuity < correction --- > 4-sample test for equality of proportions without continuity correction 14249,14250c14248 < 4-sample test for equality of proportions without continuity < correction --- > 4-sample test for equality of proportions without continuity correction Testing examples for package 'datasets' comparing 'datasets-Ex.Rout' to 'datasets-Ex.Rout.save' ... OK Testing examples for package 'methods' Testing examples for package 'grid' comparing 'grid-Ex.Rout' to 'grid-Ex.Rout.save' ... OK Testing examples for package 'splines' comparing 'splines-Ex.Rout' to 'splines-Ex.Rout.save' ... OK Testing examples for package 'stats4' comparing 'stats4-Ex.Rout' to 'stats4-Ex.Rout.save' ... OK Testing examples for package 'tcltk' Testing examples for package 'compiler' Testing examples for package 'parallel' make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests/Examples' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running strict specific tests make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ... OK running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ... OK running code in 'structure.R' ... OK comparing 'structure.Rout' to './structure.Rout.save' ... OK running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running sloppy specific tests make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running code in 'complex.R' ... OK comparing 'complex.Rout' to './complex.Rout.save' ... OK running code in 'print-tests.R' ... OK comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK running code in 'lapack.R' ... OK comparing 'lapack.Rout' to './lapack.Rout.save' ... OK running code in 'datasets.R' ... OK comparing 'datasets.Rout' to './datasets.Rout.save' ... OK running code in 'datetime.R' ... OK comparing 'datetime.Rout' to './datetime.Rout.save' ... OK running code in 'iec60559.R' ... OK comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK running code in 'eval-etc-2.R' ... OK comparing 'eval-etc-2.Rout' to './eval-etc-2.Rout.save' ... OK make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' checking Sys.timezone ... make[4]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running code in 'timezone.R' ... OK make[4]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running regression tests ... make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running code in 'array-subset.R' ... OK running code in 'classes-methods.R' ... OK running code in 'reg-tests-1a.R' ... OK running code in 'reg-tests-1b.R' ... OK running code in 'reg-tests-1c.R' ... OK running code in 'reg-tests-1d.R' ... OK running code in 'reg-tests-1e.R' ... OK running code in 'reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK running code in 'reg-examples1.R' ... OK running code in 'reg-examples2.R' ... OK running code in 'reg-packages.R' ... OK running code in 'p-qbeta-strict-tst.R' ... OK running code in 'd-p-q-r-tst-2.R' ... OK running code in 'r-strict-tst.R' ... OK running code in 'reg-IO.R' ... OK comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK running code in 'reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK running code in 'reg-plot.R' ... OK comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK running code in 'reg-S4.R' ... OK comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK running code in 'reg-S4-examples.R' ... OK running code in 'reg-BLAS.R' ... OK make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running code in 'reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK running code in 'reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in 'reg-plot-latin1.R' ... FAILED make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running tests of Internet functions make[3]: Entering directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' running code in 'internet.R' ... OK comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,153 < Warning message: < In nsl("cran.r-project.org") : < nsl() was unable to resolve host 'cran.r-project.org' --- > > > > ## As virtually all http sites redirect to https:, we only test the latter > > > > # test do_download (and "record" #{packages}): > > ap <- available.packages(contrib.url("https://cran.r-project.org")) > > ## IGNORE_RDIFF_END > > > > # test url connections > > zz <- url("https://cran.r-project.org/") > > readLines(zz) > [1] "" > [2] "" > [3] "" > [4] "The Comprehensive R Archive Network" > [5] "" > [6] "" > [7] "" > [8] "" > [9] "" > [10] "" > [11] "" > [12] "" > [13] "" > [14] "" > [15] "" > [16] "" > [17] "" > [18] "<h1>The Comprehensive R Archive Network</h1>" > [19] "" > [20] "Your browser seems not to support frames," > [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN." > [22] "" > [23] "" > [24] "" > > close(zz) > > > > # and via read.table, using an r-project.org site > > read.table("https://developer.R-project.org/inet-tests/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > > > showConnections(all = TRUE) > description class mode text isopen can read can write > 0 "stdin" "terminal" "r" "text" "opened" "yes" "no" > 1 "stdout" "terminal" "w" "text" "opened" "no" "yes" > 2 "stderr" "terminal" "w" "text" "opened" "no" "yes" > > OK make[3]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' make[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/tests' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-base-4.4.2-3.mga10.x86_64 Executing(%doc): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.ANfciG + umask 022 + cd /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + cd R-4.4.2 + DOCDIR=/home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + cp -pr /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/README /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + cp -pr /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/VERSION /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + cp -pr /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/R-admin.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + cp -pr /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/R-data.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + cp -pr /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/R-exts.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + cp -pr /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/R-FAQ.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + cp -pr /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/R-intro.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + cp -pr /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/R-4.4.2/R-lang.pdf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/share/doc/R-base + RPM_EC=0 ++ jobs -p + exit 0 warning: Duplicate build-ids /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/bin/Rscript and /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/bin/Rscript Provides: R = 4.4.2 R(ABI) = 4.4 R(base) = 4.4.2 R(class) = 4.4.2 R(methods) = 4.4.2 R(tools) = 4.4.2 R(utils) = 4.4.2 R-base = 4.4.2-3.mga10 R-base(x86-64) = 4.4.2-3.mga10 R-core = 4.4.2 R-recommended = 4.4.2 application() application(mageia-R-base.desktop) libR.so()(64bit) pkgconfig(libR) = 4.4.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.2.5)(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.16)(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.6)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_2.8)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.76()(64bit) libicuuc.so.76()(64bit) libjpeg.so.8()(64bit) libjpeg.so.8(LIBJPEG_8.0)(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.35)(64bit) libm.so.6(GLIBC_2.38)(64bit) libopenblas.so.0()(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre2-8.so.0()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libreadline.so.8()(64bit) libtcl8.6.so()(64bit) libtiff.so.6()(64bit) libtiff.so.6(LIBTIFF_4.0)(64bit) libtk8.6.so()(64bit) libtre.so.5()(64bit) libz.so.1()(64bit) pkgconfig Processing files: lib64Rmath-4.4.2-3.mga10.x86_64 Provides: lib64Rmath = 4.4.2-3.mga10 lib64Rmath(x86-64) = 4.4.2-3.mga10 libRmath.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) Processing files: lib64Rmath-devel-4.4.2-3.mga10.x86_64 Provides: lib64Rmath-devel = 4.4.2-3.mga10 lib64Rmath-devel(x86-64) = 4.4.2-3.mga10 libRmath-devel = 4.4.2-3.mga10 pkgconfig(libRmath) = 4.4.2 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: pkgconfig Processing files: R-base-debugsource-4.4.2-3.mga10.x86_64 Provides: R-base-debugsource = 4.4.2-3.mga10 R-base-debugsource(x86-64) = 4.4.2-3.mga10 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-base-debuginfo-4.4.2-3.mga10.x86_64 warning: Duplicate build-ids /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib/debug/usr/bin/Rscript-4.4.2-3.mga10.x86_64.debug and /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib/debug/usr/lib64/R/bin/Rscript-4.4.2-3.mga10.x86_64.debug Provides: R-base-debuginfo = 4.4.2-3.mga10 R-base-debuginfo(x86-64) = 4.4.2-3.mga10 debuginfo(build-id) = 0cd597e01803b25ae7135f4f4a50721c09f01b53 debuginfo(build-id) = 1633b0be981db0749c13fc6baefb383d10de3803 debuginfo(build-id) = 2b06dd186b3d93411cc6d0924053fd18cd7c2e7e debuginfo(build-id) = 3a443773c4433e614d8be3bb8cb6edffd440ca4a debuginfo(build-id) = 43aa615d8c2fabc5bd61db9dc875031bfcd0a5b0 debuginfo(build-id) = 4c45144507bbfbf778c565c2d92f98de7ef4d973 debuginfo(build-id) = 4db90bb4dd306bc44eb146be6bb3babf87dafce2 debuginfo(build-id) = 4f398a67a6efcfc19211160915ad43cdfb9e73af debuginfo(build-id) = 52d7cd4d3543bf03a1df7b153dfc85e0546159f9 debuginfo(build-id) = 5367393a91cba4c0105a9ae1da898f7d590e7d41 debuginfo(build-id) = 59df7efea3da6db7cf58306797695b4eea341d8d debuginfo(build-id) = 5d87b09ae57bc48fd2e2cf70610e17c249d6d665 debuginfo(build-id) = 6284f2ba75ee621e87aa50dfc273b12571cb630b debuginfo(build-id) = 6a80e09114a49cd72458ece467ce8e5bc091f875 debuginfo(build-id) = 6ae4c5b2a77de50b00813422e76a78b4f72c9f97 debuginfo(build-id) = 6b84914201686726514a63ecbf515f23ab703bb9 debuginfo(build-id) = 73c3543a4a583aa1f19ee8e7572163fb4c15e21b debuginfo(build-id) = 7f756b1ffdf5d67e21918162201e7b006fc3be28 debuginfo(build-id) = 8131a885ecc28ca6239cc73071033b042dcdfd87 debuginfo(build-id) = 8db995df0350b89ebbf131d6bf417899a6069196 debuginfo(build-id) = a7f7cd8f410e295741be1709ae16b9c45a6ba49d debuginfo(build-id) = a94cbeb222f846fb63662c4cd1b635d09c6ce2d3 debuginfo(build-id) = aba7de5628874faa122260d39559c1c0ebae7296 debuginfo(build-id) = afda90578132fbefb1e884de9f8edcceac65b7a1 debuginfo(build-id) = b04efe69fb808f15f7f84e56f797f5797949a1ea debuginfo(build-id) = bc41ac3deae2bf877d3c204e17b9bd7e21f1d2b9 debuginfo(build-id) = bc9e7f2f79d76a2dbc7b3dfa2c17c2e419c72693 debuginfo(build-id) = bcb3b0e6bee828687210dcec32663797e8ef4391 debuginfo(build-id) = cb486846f6a649b368f9be4c4da76378fa65617e debuginfo(build-id) = d1e7bf98e86623050f452147a5763d25f22da62a debuginfo(build-id) = dc8c3ad34b1b97cdcc0e11f2a7c2853a43b3b329 debuginfo(build-id) = nilnil Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-base-debugsource(x86-64) = 4.4.2-3.mga10 Processing files: lib64Rmath-debuginfo-4.4.2-3.mga10.x86_64 Provides: debuginfo(build-id) = 5137bfd9e32cf7d9d9827762b8b8049e5b862563 lib64Rmath-debuginfo = 4.4.2-3.mga10 lib64Rmath-debuginfo(x86-64) = 4.4.2-3.mga10 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-base-debugsource(x86-64) = 4.4.2-3.mga10 Checking for unpackaged file(s): /usr/lib/rpm/check-files /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/lib64Rmath-4.4.2-3.mga10.x86_64.rpm Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/lib64Rmath-debuginfo-4.4.2-3.mga10.x86_64.rpm Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/lib64Rmath-devel-4.4.2-3.mga10.x86_64.rpm Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/R-base-debugsource-4.4.2-3.mga10.x86_64.rpm Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/R-base-debuginfo-4.4.2-3.mga10.x86_64.rpm Wrote: /home/pterjan/rpmbuild/RPMS/x86_64/R-base-4.4.2-3.mga10.x86_64.rpm Executing(rmbuild): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.GpN78R + umask 022 + cd /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + test -d /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + rm -rf /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: Duplicate build-ids /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/bin/Rscript and /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib64/R/bin/Rscript Duplicate build-ids /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib/debug/usr/bin/Rscript-4.4.2-3.mga10.x86_64.debug and /home/pterjan/rpmbuild/BUILD/R-base-4.4.2-build/BUILDROOT/usr/lib/debug/usr/lib64/R/bin/Rscript-4.4.2-3.mga10.x86_64.debug D: [iurt_root_command] Success!