D: [iurt_root_command] chroot warning: Found bdb_ro Packages database while attempting sqlite backend: using bdb_ro backend. Installing /home/iurt/rpmbuild/SRPMS/gromacs-5.0.7-3.mga9.src.rpm Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.pyCGZF + umask 022 + cd /home/iurt/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + cd /home/iurt/rpmbuild/BUILD + rm -rf gromacs-5.0.7 + /usr/bin/gzip -dc /home/iurt/rpmbuild/SOURCES/gromacs-5.0.7.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-5.0.7 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.4z28oP + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd gromacs-5.0.7 + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables ' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables ' + export FCFLAGS + LDFLAGS=' -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags' + export LDFLAGS + /usr/bin/cmake -Wno-dev -S . -B build -DCMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-DNDEBUG -DCMAKE_C_FLAGS_RELWITHDEBINFO:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_LIBEXECDIR:PATH=/usr/libexec -DCMAKE_INSTALL_RUNSTATEDIR:PATH=/run -DCMAKE_INSTALL_SYSCONFDIR:PATH=/etc -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DCMAKE_BUILD_TYPE=RelWithDebInfo -DLIB_SUFFIX=64 -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags' -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_STATIC_LIBS:BOOL=OFF -DGMXLIB=lib64 -- The C compiler identification is GNU 11.2.1 -- The CXX compiler identification is GNU 11.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v4.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_WARN_EXTRA -- Performing Test CFLAGS_WARN_EXTRA - Success -- Performing Test CFLAGS_WARN_REL -- Performing Test CFLAGS_WARN_REL - Success -- Performing Test CFLAGS_WARN_UNINIT -- Performing Test CFLAGS_WARN_UNINIT - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_WARN_EXTRA -- Performing Test CXXFLAGS_WARN_EXTRA - Success -- Performing Test CXXFLAGS_WARN_REL -- Performing Test CXXFLAGS_WARN_REL - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for rsqrt -- Looking for rsqrt - not found -- Looking for rsqrtf -- Looking for rsqrtf - not found -- Looking for sqrtf -- Looking for sqrtf - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for zlibVersion in /usr/lib64/libz.so -- Looking for zlibVersion in /usr/lib64/libz.so - found -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.12") -- Looking for xmlTextWriterEndAttribute in /usr/lib64/libxml2.so -- Looking for xmlTextWriterEndAttribute in /usr/lib64/libxml2.so - found -- Looking for include file libxml/parser.h -- Looking for include file libxml/parser.h - found -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Could NOT find Boost (missing: Boost_INCLUDE_DIR) (Required is at least version "1.44.0") Boost >= 1.44 not found. Using minimal internal version. This may cause trouble if you plan on compiling/linking other software that uses Boost against Gromacs. -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build user/date/host/cpu information -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for isfinite -- Performing Test isfinite_compile_ok -- Performing Test isfinite_compile_ok - Success -- Checking for isfinite - yes -- Checking for _isfinite -- Performing Test _isfinite_compile_ok -- Performing Test _isfinite_compile_ok - Failed -- Checking for _isfinite - no -- Checking for _finite -- Performing Test _finite_compile_ok -- Performing Test _finite_compile_ok - Failed -- Checking for _finite - no -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test GMX_CXX11_SUPPORTED -- Performing Test GMX_CXX11_SUPPORTED - Success -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.9 -- Looking for fftwf_plan_r2r_1d in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_r2r_1d in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Could NOT find BLAS (missing: BLAS_LIBRARIES) -- Using GROMACS built-in BLAS. -- Could NOT find LAPACK (missing: LAPACK_LIBRARIES) Reason given by package: LAPACK could not be found because dependency BLAS could not be found. -- Using GROMACS built-in LAPACK. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could NOT find Pandoc (missing: PANDOC_EXECUTABLE) -- Found PythonInterp: /usr/bin/python (found version "3.9.6") -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Looking for inttypes.h -- Looking for inttypes.h - found -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_DEPRECATED_REGISTER -- Performing Test HAS_NO_DEPRECATED_REGISTER - Success -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BUILD_STATIC_LIBS GMXLIB INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build + /usr/bin/cmake --build build -j8 --verbose /usr/bin/cmake -S/home/iurt/rpmbuild/BUILD/gromacs-5.0.7 -B/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/CMakeFiles /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/iurt/rpmbuild/BUILD/gromacs-5.0.7 /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/iurt/rpmbuild/BUILD/gromacs-5.0.7 /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' /usr/bin/gmake -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' [ 0%] Building C object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/md.c.o [ 0%] Building C object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/membed.c.o [ 0%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o [ 1%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o [ 1%] Building C object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/pme_loadbal.c.o [ 1%] Building C object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.c.o [ 1%] Building C object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/runner.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/membed.c.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/membed.c.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs/mdrun/membed.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -MD -MT src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o -MF CMakeFiles/view_objlib.dir/view/view.cpp.o.d -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs/view/view.cpp cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/md.c.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/md.c.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/md.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs/mdrun/md.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs/mdrun/mdrun.cpp cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/pme_loadbal.c.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/pme_loadbal.c.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/pme_loadbal.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs/mdrun/pme_loadbal.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.c.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.c.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs/mdrun/repl_ex.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -MD -MT src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/runner.c.o -MF CMakeFiles/mdrun_objlib.dir/mdrun/runner.c.o.d -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs/mdrun/runner.c gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/iurt/rpmbuild/BUILD/gromacs-5.0.7 /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' /usr/bin/gmake -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/bwlzh.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/bwlzh.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/bwlzh.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/bwlzh.c gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' [ 2%] Built target view_objlib [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/bwt.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/bwt.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/bwt.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/bwt.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/bwt.c [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/coder.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/coder.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/coder.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/coder.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/coder.c [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/dict.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/dict.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/dict.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/dict.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/dict.c [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/fixpoint.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/fixpoint.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/fixpoint.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/fixpoint.c [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/huffman.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/huffman.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/huffman.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/huffman.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/huffman.c [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/huffmem.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/huffmem.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/huffmem.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/huffmem.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/huffmem.c [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/lz77.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/lz77.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/lz77.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/lz77.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/lz77.c [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/mtf.c.o [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/merge_sort.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/mtf.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/mtf.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/mtf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/mtf.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/merge_sort.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/merge_sort.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/merge_sort.c [ 2%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/rle.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/rle.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/rle.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/rle.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/rle.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/tng_compress.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/tng_compress.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/tng_compress.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/tng_compress.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/vals16.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/vals16.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/vals16.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/vals16.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/vals16.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/warnmalloc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/warnmalloc.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/warnmalloc.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/warnmalloc.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/widemuldiv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/widemuldiv.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/widemuldiv.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/widemuldiv.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/xtc2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/xtc2.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/xtc2.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/xtc2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/xtc2.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/xtc3.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/xtc3.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/xtc3.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/compression/xtc3.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/compression/xtc3.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/lib/tng_io.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -DUSE_STD_INTTYPES_H -DUSE_ZLIB -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/lib/tng_io.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/lib/tng_io.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/lib/tng_io.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/lib/md5.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/tng_io/src/lib/md5.c.o -MF CMakeFiles/libgromacs.dir/__/external/tng_io/src/lib/md5.c.o.d -o CMakeFiles/libgromacs.dir/__/external/tng_io/src/lib/md5.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/md5.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/add_par.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/addconf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/addconf.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/addconf.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/addconf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/addconf.c [ 3%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calc_verletbuf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calc_verletbuf.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/calc_verletbuf.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/calc_verletbuf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/calc_verletbuf.c [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/compute_io.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/compute_io.c [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/convparm.c [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/fflibutil.cpp [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_ad.c [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_maxwell_velocities.c [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' [ 4%] Built target mdrun_objlib [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/genconf.c [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/genhydro.c [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gmxcpp.c In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:295, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: In function 'strncpy', inlined from 'tng_atom_data_write.isra' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:2986:5: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_atom_data_write.isra': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:2985:26: note: length computed here 2985 | len = tng_min_i((int)strlen(atom->name) + 1, TNG_MAX_STR_LEN); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:295, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: In function 'strncpy', inlined from 'tng_atom_data_write.isra' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:2990:5: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_atom_data_write.isra': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:2989:26: note: length computed here 2989 | len = tng_min_i((int)strlen(atom->atom_type) + 1, TNG_MAX_STR_LEN); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:295, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: In function 'strncpy', inlined from 'tng_residue_data_write.isra' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:2888:5: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_residue_data_write.isra': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:2887:26: note: length computed here 2887 | len = tng_min_i((int)strlen(residue->name) + 1, TNG_MAX_STR_LEN); | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:43: In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:276:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 4095 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:296:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:297:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:298:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:287:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:288:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:241:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:243:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:244:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:231:29: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 31 bytes from a string of length 31 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'read_vsite_database' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gen_vsite.c:188:17: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output may be truncated copying 4094 bytes from a string of length 4094 [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gpp_atomtype.c In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:295, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: In function 'strncpy', inlined from 'tng_data_block_write.isra' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:7094:21: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_data_block_write.isra': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:7093:41: note: length computed here 7093 | len = (unsigned int)strlen(data->strings[i][j]) + 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gpp_bond_atomtype.c [ 4%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/gpp_nextnb.c In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:295, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: In function 'strncpy', inlined from 'tng_particle_data_block_write.isra' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:6241:25: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_particle_data_block_write.isra': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:6240:45: note: length computed here 6240 | len = (unsigned int)strlen(second_dim_values[k]) + 1; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/grompp.c [ 5%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/h_db.c [ 5%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/hackblock.c [ 5%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/hizzie.c [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/insert-molecules.cpp [ 5%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/nm2type.c [ 5%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/pdb2gmx.c [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/pdb2top.cpp [ 5%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.c.o [ 5%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/protonate.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/pgutil.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/protonate.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/protonate.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/protonate.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/protonate.c [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/read-conformation.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/read-conformation.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/read-conformation.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/read-conformation.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/read-conformation.cpp [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readadress.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readadress.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/readadress.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/readadress.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readadress.c [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/readir.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readir.c [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readpull.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/pdb2gmx.c: In function 'gmx_pdb2gmx': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/pdb2gmx.c:2168:32: warning: '.itp' directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] 2168 | sprintf(buf_fn, "%s%c%s.itp", ffdir, DIR_SEPARATOR, watermodel); | ^~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/pdb2gmx.c:47: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 4101) into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/pdb2gmx.c:2168:32: warning: '.itp' directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] 2168 | sprintf(buf_fn, "%s%c%s.itp", ffdir, DIR_SEPARATOR, watermodel); | ^~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/pdb2gmx.c:47: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 4101) into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readrot.c [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/resall.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/resall.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readrot.c: In function 'set_reference_positions': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readrot.c:267:30: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] 267 | sprintf(reffile, "%s.%d.%s", base, g, extension); | ^~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readrot.c:267:26: note: directive argument in the range [0, 2147483647] 267 | sprintf(reffile, "%s.%d.%s", base, g, extension); | ^~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/typedefs.h:46, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/vec.h:118, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readrot.c:41: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 4108) into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readrot.c:230:58: warning: '%s' directive writing up to 4095 bytes into a region of size 4050 [-Wformat-overflow=] 230 | sprintf(warn_buf, "%s Box size in reference file %s differs from actual box size!", | ^~ ...... 290 | check_box_unchanged(f_box, box, reffile, wi); | ~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/typedefs.h:46, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/vec.h:118, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/readrot.c:41: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 77 and 4172 bytes into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/solvate.cpp [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/sortwater.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/sortwater.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/sortwater.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/sortwater.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/sortwater.c [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/specbond.c [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/ter_db.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/solvate.cpp: In function 'void update_top(t_atoms*, real (*)[3], int, t_filenm*, gmx_atomprop_t)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/solvate.cpp:569:37: warning: ' in water ' directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 569 | sprintf(buf, "%s in water\n", buf2); | ^~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/solvate.cpp:45: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 11 and 4106 bytes into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/specbond.c: In function 'mk_specbonds': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/specbond.c:302:37: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] 302 | sprintf(buf, "%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); | ^~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/specbond.c:302:34: note: directive argument in the range [-2147483647, 2147483647] 302 | sprintf(buf, "%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/typedefs.h:46, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/specbond.c:45: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/specbond.c:313:37: warning: '%d' directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] 313 | sprintf(buf, "%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); | ^~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/specbond.c:313:34: note: directive argument in the range [-2147483647, 2147483647] 313 | sprintf(buf, "%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/typedefs.h:46, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/specbond.c:45: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 12) into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/solvate.cpp:43: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void add_solv(const char*, t_atoms*, real (**)[3], real (**)[3], real**, int, real (*)[3], gmx_atomprop_t, real, real, int*, int*, real, int, output_env_t)' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/solvate.cpp:393:12, inlined from 'int gmx_solvate(int, char**)' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/solvate.cpp:779:13: /usr/include/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound 4096 equals destination size [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/tomorse.c In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:295, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: In function 'strncpy', inlined from 'tng_molecules_block_write' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:3663:9, inlined from 'tng_file_headers_write' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:12786:8: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_file_headers_write': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:3662:30: note: length computed here 3662 | len = tng_min_i((int)strlen(molecule->name) + 1, TNG_MAX_STR_LEN); | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:295, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: In function 'strncpy', inlined from 'tng_chain_data_write' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:2784:5, inlined from 'tng_molecules_block_write' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:3744:17, inlined from 'tng_file_headers_write' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:12786:8: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_file_headers_write': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:2783:26: note: length computed here 2783 | len = tng_min_i((int)strlen(chain->name) + 1, TNG_MAX_STR_LEN); | ^~~~~~~~~~~~~~~~~~~ [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/topdirs.c [ 6%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/topio.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/topio.c [ 7%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/toppush.c [ 7%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/topshake.c [ 7%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/toputil.c [ 7%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/vsite_parm.c [ 7%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/x2top.c [ 7%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.c.o -MF CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.c.o.d -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/xlate.c In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:295, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: In function 'strncpy', inlined from 'tng_data_block_add' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:13612:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_data_block_add': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:13612:47: note: length computed here 13612 | strncpy(data->block_name, block_name, strlen(block_name) + 1); | ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:295, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: In function 'strncpy', inlined from 'tng_particle_data_block_add' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:13765:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_particle_data_block_add': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:13765:47: note: length computed here 13765 | strncpy(data->block_name, block_name, strlen(block_name) + 1); | ^~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/cmdlinehelpcontext.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/cmdlinehelpmodule.cpp /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/toppush.c: In function 'push_gb_params': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/toppush.c:1061:57: warning: '%s' directive writing up to 4095 bytes into a region of size 4065 [-Wformat-overflow=] 1061 | sprintf(errbuf, "Too few gb parameters for type %s\n", atypename); | ^~ ~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxpreprocess/toppush.c:45: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 33 and 4128 bytes into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/cmdlinehelpwriter.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/cmdlineinit.cpp [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/cmdlinemodulemanager.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/cmdlineparser.cpp /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c: In function 'tng_time_get_str': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:16950:24: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] 16950 | "%4d-%02d-%02d %02d:%02d:%02d", | ^~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include/tng/tng_io.h:293, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/src/lib/tng_io.c:18: /usr/include/bits/stdio2.h:71:10: note: '__builtin___snprintf_chk' output between 20 and 72 bytes into a destination of size 24 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/cmdlineprogramcontext.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/pargs.cpp [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -MF CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o.d -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/shellcompletions.cpp [ 8%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.c.o -MF CMakeFiles/libgromacs.dir/fft/fft.c.o.d -o CMakeFiles/libgromacs.dir/fft/fft.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fft/fft.c [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fft/fft5d.cpp [ 8%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.c.o -MF CMakeFiles/libgromacs.dir/fft/parallel_3dfft.c.o.d -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fft/parallel_3dfft.c [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -MF CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o.d -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fft/fft_fftw3.cpp [ 8%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/eigensolver.c [ 8%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:37: In function 'strncpy', inlined from 'dsaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2046:17: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dsaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2050:17: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dsaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2054:17: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dsaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2058:17: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dsaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2022:13: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dsaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2074:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dsaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2089:13: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ssaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:4916:17: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ssaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:4920:17: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ssaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:4924:17: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ssaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:4928:17: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ssaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:4892:13: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ssaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:4944:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'ssaup2_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:4959:13: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dseupd_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2507:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dseupd_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2503:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dseupd_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2499:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'dseupd_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:2495:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'sseupd_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:5377:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'sseupd_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:5373:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'sseupd_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:5369:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'sseupd_' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_arpack.c:5365:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/matrix.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include 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CMakeFiles/libgromacs.dir/linearalgebra/matrix.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/matrix.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/mtxio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/mtxio.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/mtxio.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/mtxio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/mtxio.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/nrjac.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/nrjac.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/nrjac.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/nrjac.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/sparsematrix.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dasum.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dasum.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dasum.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dasum.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dasum.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/daxpy.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/daxpy.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/daxpy.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/daxpy.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/daxpy.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dcopy.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dcopy.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dcopy.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dcopy.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dcopy.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ddot.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H 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CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ddot.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ddot.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/ddot.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dgemm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dgemm.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dgemm.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dgemm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dgemm.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dgemv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dgemv.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dgemv.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dgemv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dgemv.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dger.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dger.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dger.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dger.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dger.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dnrm2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dnrm2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dnrm2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dnrm2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dnrm2.c [ 9%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/drot.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/drot.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/drot.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/drot.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/drot.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dscal.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dscal.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dscal.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dscal.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dscal.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dswap.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dswap.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dswap.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dswap.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dswap.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsymv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsymv.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsymv.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsymv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dsymv.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsyr2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsyr2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsyr2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsyr2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dsyr2.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsyr2k.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsyr2k.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsyr2k.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dsyr2k.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dsyr2k.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrmm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrmm.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrmm.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrmm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dtrmm.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrmv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrmv.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrmv.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrmv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dtrmv.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrsm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrsm.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrsm.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/dtrsm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/dtrsm.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/idamax.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/idamax.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/idamax.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/idamax.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/idamax.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/isamax.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/isamax.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/isamax.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/isamax.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/isamax.c [ 10%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sasum.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sasum.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sasum.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sasum.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/sasum.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/saxpy.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/saxpy.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/saxpy.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/saxpy.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/saxpy.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/scopy.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H 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CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/scopy.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/scopy.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/scopy.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sdot.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sdot.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sdot.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sdot.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/sdot.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sgemm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sgemm.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sgemm.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sgemm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/sgemm.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sgemv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sgemv.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sgemv.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sgemv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/sgemv.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sger.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sger.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sger.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sger.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/sger.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/snrm2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/snrm2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/snrm2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/snrm2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/snrm2.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/srot.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/srot.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/srot.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/srot.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/srot.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sscal.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sscal.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sscal.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sscal.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/sscal.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sswap.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sswap.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sswap.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/sswap.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/sswap.c [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssyr2.c.o [ 12%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssymv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssyr2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssyr2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssyr2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/ssyr2.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssymv.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssymv.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssymv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/ssymv.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssyr2k.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssyr2k.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssyr2k.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/ssyr2k.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/ssyr2k.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strmm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strmm.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strmm.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strmm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/strmm.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strmv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strmv.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strmv.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strmv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/strmv.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strsm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strsm.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strsm.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_blas/strsm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_blas/strsm.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dbdsdc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dbdsdc.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dbdsdc.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dbdsdc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dbdsdc.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dbdsqr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dbdsqr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dbdsqr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dbdsqr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dbdsqr.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgebd2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgebd2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgebd2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgebd2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dgebd2.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgebrd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgebrd.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgebrd.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgebrd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dgebrd.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgelq2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgelq2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgelq2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgelq2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dgelq2.c [ 13%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgelqf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgelqf.c.o -MF 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgeqr2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgeqr2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgeqr2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dgeqr2.c [ 14%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgeqrf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgeqrf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgeqrf.c.o.d -o 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--param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgesdd.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgesdd.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgesdd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dgesdd.c [ 14%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetf2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetf2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetf2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetf2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dgetf2.c [ 14%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetrf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetrf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetrf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetrf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dgetrf.c [ 14%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetri.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetrs.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetrs.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetrs.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dgetrs.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dgetrs.c [ 14%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlabrd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlabrd.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlabrd.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlabrd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlabrd.c [ 14%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlacpy.c.o cd 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-fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlacpy.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlacpy.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlacpy.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlacpy.c [ 14%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlae2.c.o [ 14%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaebz.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlae2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlae2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlae2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlae2.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaebz.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaebz.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaebz.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlaebz.c [ 14%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaed6.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaed6.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaed6.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaed6.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlaed6.c [ 15%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaev2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlagtf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlagtf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlagtf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlagtf.c [ 15%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlagts.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include 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--param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlamrg.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlamrg.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlamrg.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlamrg.c [ 15%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlange.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlange.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlange.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlange.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlange.c [ 15%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlanst.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlanst.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlanst.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlanst.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlanst.c [ 15%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlansy.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlapy2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlapy2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlapy2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlapy2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlapy2.c [ 15%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlar1vx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlar1vx.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlar1vx.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlar1vx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlar1vx.c [ 15%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarf.c.o cd 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-fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlarf.c [ 15%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarfb.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarfb.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarfb.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarfb.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlarfb.c [ 15%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarfg.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarfg.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarfg.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarfg.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlarfg.c [ 16%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarft.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarft.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarft.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarft.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlarft.c [ 16%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarnv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrbx.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrbx.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrbx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlarrbx.c [ 16%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrex.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrex.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrex.c.o.d -o 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--param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrfx.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrfx.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrfx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlarrfx.c [ 16%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrvx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrvx.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrvx.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlarrvx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlarrvx.c [ 16%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlartg.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlartg.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlartg.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlartg.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlartg.c [ 16%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaruv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlas2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlas2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlas2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlas2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlas2.c [ 16%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlascl.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlascl.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlascl.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlascl.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlascl.c [ 16%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd0.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd0.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd0.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd0.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasd0.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd1.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd1.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd1.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd1.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasd1.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasd2.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd3.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd3.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd3.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd3.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasd3.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd4.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd4.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd4.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd4.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasd4.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd5.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd5.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd5.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd5.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasd5.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd6.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd6.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd6.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd6.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasd6.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd7.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd7.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd7.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd7.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasd7.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd8.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd8.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd8.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasd8.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasd8.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasda.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasda.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasda.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasda.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasda.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasdq.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasdt.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasdt.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasdt.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasdt.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasdt.c [ 17%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaset.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaset.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaset.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaset.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlaset.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq1.c.o cd 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-fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq1.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq1.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq1.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasq1.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasq2.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq3.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq3.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq3.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq3.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasq3.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq4.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq4.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq4.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq4.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasq4.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq5.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq5.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq5.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq5.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasq5.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq6.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq6.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq6.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasq6.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasq6.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasr.c.o.d -o 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--param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasrt.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasrt.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasrt.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasrt.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasrt2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlasrt2.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlassq.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlassq.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlassq.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlassq.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlassq.c [ 18%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlasv2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaswp.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaswp.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaswp.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlaswp.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlaswp.c [ 19%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlatrd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlatrd.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlatrd.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dlatrd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dlatrd.c [ 19%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorg2r.c.o cd 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-fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorg2r.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorg2r.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorg2r.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dorg2r.c [ 19%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorgbr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorgbr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorgbr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorgbr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dorgbr.c [ 19%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorgl2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorgl2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorgl2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorgl2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dorgl2.c [ 19%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorglq.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorglq.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorglq.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorglq.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dorglq.c [ 19%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorgqr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorm2l.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorm2l.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorm2l.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dorm2l.c [ 19%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorm2r.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorm2r.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorm2r.c.o.d -o 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--param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormbr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormbr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormbr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dormbr.c [ 19%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dorml2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dorml2.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormlq.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormlq.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormlq.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormlq.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dormlq.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormql.c.o [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormqr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dormql.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormqr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormqr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormqr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dormqr.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormtr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormtr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormtr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dormtr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dormtr.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstebz.c.o cd 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-fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstebz.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstebz.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstebz.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dstebz.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstegr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstegr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstegr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstegr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dstegr.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstein.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstein.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstein.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstein.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dstein.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsteqr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsteqr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsteqr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsteqr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dsteqr.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsterf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsterf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsterf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsterf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dsterf.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstevr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstevr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstevr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dstevr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dstevr.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsyevr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsyevr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsyevr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsyevr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dsyevr.c [ 20%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsytd2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsytd2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsytd2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsytd2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dsytd2.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsytrd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsytrd.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsytrd.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dsytrd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dsytrd.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dtrti2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dtrti2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dtrti2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dtrti2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dtrti2.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dtrtri.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dtrtri.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dtrtri.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/dtrtri.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/dtrtri.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ilasrt2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ilasrt2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ilasrt2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ilasrt2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/ilasrt2.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sbdsdc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sbdsdc.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sbdsdc.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sbdsdc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sbdsdc.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sbdsqr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sbdsqr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sbdsqr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sbdsqr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sbdsqr.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgebd2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgebd2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgebd2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgebd2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgebd2.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgebrd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgebrd.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgebrd.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgebrd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgebrd.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgelq2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgelq2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgelq2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgelq2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgelq2.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgelqf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgelqf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgelqf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgelqf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgelqf.c [ 21%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgeqr2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgeqr2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgeqr2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgeqr2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgeqr2.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgeqrf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS 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CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgeqrf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgeqrf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgeqrf.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgesdd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgesdd.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgesdd.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgesdd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgesdd.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetf2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetf2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetf2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetf2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgetf2.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetrf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetrf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetrf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetrf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgetrf.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetri.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetri.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetri.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetri.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgetri.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetrs.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetrs.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetrs.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sgetrs.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sgetrs.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slabrd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slae2.c.o [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slacpy.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slae2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slae2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slae2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slae2.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slacpy.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slacpy.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slacpy.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slacpy.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaebz.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaebz.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaebz.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaebz.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slaebz.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaed6.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaed6.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaed6.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaed6.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slaed6.c [ 23%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaev2.c.o cd 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slagtf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slagtf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slagtf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slagtf.c [ 24%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slagts.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slagts.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slagts.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slagts.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slagts.c [ 24%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slamrg.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slamrg.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slamrg.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slamrg.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slamrg.c [ 24%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slange.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slange.c.o -MF 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slanst.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slanst.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slanst.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slanst.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slansy.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slansy.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slansy.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slansy.c [ 24%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slapy2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slapy2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slapy2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slapy2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slapy2.c [ 24%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slar1vx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slar1vx.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slar1vx.c.o.d -o 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--param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slarf.c [ 24%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarfb.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slarfb.c [ 24%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarfg.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarfg.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarfg.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarfg.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slarfg.c [ 25%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarft.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarnv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarnv.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarnv.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarnv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slarnv.c [ 25%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrbx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrbx.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrbx.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrbx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slarrbx.c [ 25%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrex.c.o cd 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-fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrex.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrex.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrex.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slarrex.c [ 25%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrfx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrfx.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrfx.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrfx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slarrfx.c [ 25%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrvx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrvx.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrvx.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slarrvx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slarrvx.c [ 25%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slartg.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slartg.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slartg.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slartg.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slartg.c [ 25%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaruv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS 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CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaruv.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaruv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slaruv.c [ 25%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slas2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slas2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slas2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slas2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slas2.c [ 25%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slascl.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slascl.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slascl.c.o.d -o 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--param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd0.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd0.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd0.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasd0.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd1.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasd1.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasd2.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd3.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd4.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd4.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd4.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd4.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasd4.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd5.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd5.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd5.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd5.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasd5.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd6.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd6.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd6.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd6.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasd6.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd7.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd7.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd7.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd7.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasd7.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd8.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd8.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd8.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasd8.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasd8.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasda.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasda.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasda.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasda.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasda.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasdq.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasdq.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasdq.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasdq.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasdq.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasdt.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasdt.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasdt.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasdt.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasdt.c [ 26%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaset.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaset.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaset.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaset.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slaset.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq1.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq1.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq1.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq1.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasq1.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasq2.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq3.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq3.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq3.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq3.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasq3.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq4.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq5.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq5.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq5.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq5.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasq5.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq6.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq6.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq6.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasq6.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasq6.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasr.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasrt.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasrt.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasrt.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasrt.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasrt.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasrt2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasrt2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasrt2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasrt2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasrt2.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slassq.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slassq.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slassq.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slassq.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slassq.c [ 27%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasv2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasv2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasv2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slasv2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slasv2.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaswp.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaswp.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaswp.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slaswp.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slaswp.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slatrd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slatrd.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slatrd.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/slatrd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/slatrd.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorg2r.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorg2r.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorg2r.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorg2r.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sorg2r.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorgbr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sorgbr.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorgl2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorgl2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorgl2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorgl2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sorgl2.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorglq.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorgqr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorgqr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorgqr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorgqr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sorgqr.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorm2l.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorm2l.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorm2l.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorm2l.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sorm2l.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorm2r.c.o [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormbr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorm2r.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorm2r.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorm2r.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sorm2r.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormbr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormbr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormbr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sormbr.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorml2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorml2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorml2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sorml2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sorml2.c [ 28%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormlq.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormlq.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormlq.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormlq.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sormlq.c [ 29%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormql.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormql.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormql.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormql.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sormql.c [ 29%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormqr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormqr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormqr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormqr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sormqr.c [ 29%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormtr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormtr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sormtr.c.o.d -o 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--param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstebz.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstebz.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstebz.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sstebz.c [ 29%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstegr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sstegr.c [ 29%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstein.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstein.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstein.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstein.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sstein.c [ 29%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssteqr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssterf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssterf.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssterf.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssterf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/ssterf.c [ 29%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstevr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstevr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstevr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/sstevr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/sstevr.c [ 29%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssyevr.c.o cd 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-fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssyevr.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssyevr.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssyevr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/ssyevr.c [ 29%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssytd2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssytd2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssytd2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssytd2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/ssytd2.c [ 30%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssytrd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID 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src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssytrd.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssytrd.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/ssytrd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/ssytrd.c [ 30%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/strti2.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/strti2.c.o -MF CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/strti2.c.o.d -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/strti2.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/linearalgebra/gmx_lapack/strti2.c [ 30%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/linearalgebra/gmx_lapack/strtri.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS 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-Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/3dview.c.o -MF CMakeFiles/libgromacs.dir/math/3dview.c.o.d -o CMakeFiles/libgromacs.dir/math/3dview.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/math/3dview.c [ 30%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.c.o -MF CMakeFiles/libgromacs.dir/math/utilities.c.o.d -o CMakeFiles/libgromacs.dir/math/utilities.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/math/utilities.c [ 30%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/random/random.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/random/random.c.o -MF CMakeFiles/libgromacs.dir/random/random.c.o.d -o CMakeFiles/libgromacs.dir/random/random.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/random/random.c [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/helpformat.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/helpmanager.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/helptopic.cpp [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -MF CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o.d -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/helpwritercontext.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -MF CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o.d -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/options/abstractoption.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -MF CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o.d -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/options/basicoptions.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -MF CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o.d -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/options/filenameoption.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o -MF CMakeFiles/libgromacs.dir/options/options.cpp.o.d -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/options/options.cpp /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/helpwritercontext.cpp: In copy constructor 'gmx::HelpWriterContext::HelpWriterContext(const gmx::HelpWriterContext&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/helpwritercontext.cpp:617:34: warning: implicitly-declared 'gmx::HelpWriterContext::Impl::Impl(const gmx::HelpWriterContext::Impl&)' is deprecated [-Wdeprecated-copy] 617 | : impl_(new Impl(*other.impl_)) | ^ In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/helpwritercontext.h:49, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/helpwritercontext.cpp:42: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/../utility/common.h:89:20: note: because 'gmx::HelpWriterContext::Impl' has user-provided 'gmx::HelpWriterContext::Impl& gmx::HelpWriterContext::Impl::operator=(const gmx::HelpWriterContext::Impl&)' 89 | ClassName &operator=(const ClassName &) | ^~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/onlinehelp/helpwritercontext.cpp:532:9: note: in expansion of macro 'GMX_DISALLOW_ASSIGN' 532 | GMX_DISALLOW_ASSIGN(Impl); | ^~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -MF CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o.d -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/options/optionsassigner.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -MF CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o.d -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/options/optionsvisitor.cpp [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -MF CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/options/timeunitmanager.cpp [ 31%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.c.o -MF CMakeFiles/libgromacs.dir/timing/cyclecounter.c.o.d -o CMakeFiles/libgromacs.dir/timing/cyclecounter.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/cyclecounter.c [ 31%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.c.o -MF CMakeFiles/libgromacs.dir/timing/wallcycle.c.o.d -o CMakeFiles/libgromacs.dir/timing/wallcycle.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.c: In function 'print_cycles.part.0': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.c:539:59: warning: '%4d' directive output may be truncated writing between 4 and 10 bytes into a region of size 6 [-Wformat-truncation=] 539 | snprintf(nnodes_str, sizeof(nnodes_str), "%4d", nnodes); | ^~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.c:539:58: note: directive argument in the range [0, 2147483647] 539 | snprintf(nnodes_str, sizeof(nnodes_str), "%4d", nnodes); | ^~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.h:40, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.c:37: /usr/include/bits/stdio2.h:71:10: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 6 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.c:547:63: warning: '%4d' directive output may be truncated writing between 4 and 10 bytes into a region of size 6 [-Wformat-truncation=] 547 | snprintf(nthreads_str, sizeof(nthreads_str), "%4d", nthreads); | ^~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.c:547:62: note: directive argument in the range [0, 2147483647] 547 | snprintf(nthreads_str, sizeof(nthreads_str), "%4d", nthreads); | ^~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.h:40, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/wallcycle.c:37: /usr/include/bits/stdio2.h:71:10: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 6 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 31%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.c.o -MF CMakeFiles/libgromacs.dir/timing/walltime_accounting.c.o.d -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/timing/walltime_accounting.c [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -MF CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/baseversion.cpp [ 31%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.c.o -MF CMakeFiles/libgromacs.dir/utility/cstringutil.c.o.d -o CMakeFiles/libgromacs.dir/utility/cstringutil.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/cstringutil.c [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/errorcodes.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -MF CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/errorformat.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -MF CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/exceptions.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/file.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/file.cpp.o -MF CMakeFiles/libgromacs.dir/utility/file.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/file.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/file.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/gmxassert.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/gmxomp.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -MF CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/gmxregex.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o -MF CMakeFiles/libgromacs.dir/utility/init.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/init.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -MF CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/messagestringcollector.cpp [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -MF CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/programcontext.cpp [ 32%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.c.o -MF CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.c.o.d -o CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/qsort_threadsafe.c [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.c.o -MF CMakeFiles/libgromacs.dir/utility/smalloc.c.o.d -o CMakeFiles/libgromacs.dir/utility/smalloc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/smalloc.c [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -MF CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o.d -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/utility/stringutil.cpp [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.c.o -MF CMakeFiles/libgromacs.dir/fileio/confio.c.o.d -o CMakeFiles/libgromacs.dir/fileio/confio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/../legacyheaders/readinp.h:41, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/trxio.h:43, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:57: In function 'strncpy', inlined from 'write_hconf_indexed_p' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1315:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 5 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'write_hconf_indexed_p' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1323:13: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 5 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'strncpy', inlined from 'write_hconf_indexed_p' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1333:13: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' output truncated before terminating nul copying 5 bytes from a string of the same length [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c: In function 'write_hconf_box': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: warning: '%d' directive writing between 2 and 10 bytes into a region of size between 7 and 75 [-Wformat-overflow=] 1281 | sprintf(format, "%%%d.%df%%%d.%df%%%d.%df" | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1282:28: note: format string is defined here 1282 | "%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df%%%d.%df\n", | ^~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [10, 2147483647] 1281 | sprintf(format, "%%%d.%df%%%d.%df%%%d.%df" | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [5, 2147483647] /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [10, 2147483647] /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [5, 2147483647] /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [10, 2147483647] /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [5, 2147483647] /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [10, 2147483647] /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [5, 2147483647] /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [10, 2147483647] /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:1281:25: note: directive argument in the range [5, 2147483647] In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/confio.c:42: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 56 and 209 bytes into a destination of size 100 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.c.o -MF CMakeFiles/libgromacs.dir/fileio/enxio.c.o.d -o CMakeFiles/libgromacs.dir/fileio/enxio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/enxio.c [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filenm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/filenm.c.o -MF CMakeFiles/libgromacs.dir/fileio/filenm.c.o.d -o CMakeFiles/libgromacs.dir/fileio/filenm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.c In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.c:37: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.c: In function 'parse_file_args': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.h:78:18: warning: left shift of negative value [-Wshift-negative-value] 78 | #define ffSET 1<<0 | ^~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.c:64:43: note: in expansion of macro 'ffSET' 64 | #define UN_SET(fn) (fn.flag = (fn.flag & ~ffSET)) | ^~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.c:575:9: note: in expansion of macro 'UN_SET' 575 | UN_SET(fnm[i]); | ^~~~~~ [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/futil.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/futil.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/futil.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/futil.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/futil.cpp [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_system_xdr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_system_xdr.c.o -MF CMakeFiles/libgromacs.dir/fileio/gmx_system_xdr.c.o.d -o CMakeFiles/libgromacs.dir/fileio/gmx_system_xdr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c: In function 'xdr_int': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c:189:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 189 | *ip = (int) l; | ~~~~^~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c:191:9: note: here 191 | case XDR_FREE: | ^~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c: In function 'xdr_u_int': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c:217:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 217 | *up = (unsigned int) l; | ~~~~^~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c:219:9: note: here 219 | case XDR_FREE: | ^~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c: In function 'xdr_string': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c:483:22: warning: this statement may fall through [-Wimplicit-fallthrough=] 483 | sp[size] = 0; | ~~~~~~~~~^~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmx_system_xdr.c:486:9: note: here 486 | case XDR_ENCODE: | ^~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.c: In function 'add_suffix_to_output_names': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.c:819:42: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 819 | sprintf(newname, "%s%s.%s", buf, suffix, extpos + 1); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/../legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/../legacyheaders/typedefs.h:46, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.h:41, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/filenm.c:37: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 4097) into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.c.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio.c.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmxfio.c [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_asc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_asc.c.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio_asc.c.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio_asc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmxfio_asc.c [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_bin.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_bin.c.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio_bin.c.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio_bin.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmxfio_bin.c [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_rw.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_rw.c.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio_rw.c.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio_rw.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmxfio_rw.c [ 34%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.c.o -MF CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.c.o.d -o CMakeFiles/libgromacs.dir/fileio/gmxfio_xdr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/gmxfio_xdr.c [ 35%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.c.o -MF CMakeFiles/libgromacs.dir/fileio/libxdrf.c.o.d -o CMakeFiles/libgromacs.dir/fileio/libxdrf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/libxdrf.c [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/matio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/matio.cpp /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/futil.cpp: In function 'int gmx_directory_nextfile(gmx_directory_t, char*, int)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/futil.cpp:696:23: warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated [-Wdeprecated-declarations] 696 | rc = readdir_r(gmxdir->dirent_handle, direntp_large, &p); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/futil.cpp:51: /usr/include/dirent.h:183:12: note: declared here 183 | extern int readdir_r (DIR *__restrict __dirp, | ^~~~~~~~~ [ 35%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.c.o -MF CMakeFiles/libgromacs.dir/fileio/md5.c.o.d -o CMakeFiles/libgromacs.dir/fileio/md5.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/md5.c [ 35%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mdoutf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/mdoutf.c.o -MF CMakeFiles/libgromacs.dir/fileio/mdoutf.c.o.d -o CMakeFiles/libgromacs.dir/fileio/mdoutf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/mdoutf.c [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/path.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/path.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/path.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/path.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/path.cpp [ 35%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.c.o -MF CMakeFiles/libgromacs.dir/fileio/pdbio.c.o.d -o CMakeFiles/libgromacs.dir/fileio/pdbio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/pdbio.c [ 35%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/strdb.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/strdb.c.o -MF CMakeFiles/libgromacs.dir/fileio/strdb.c.o.d -o CMakeFiles/libgromacs.dir/fileio/strdb.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/strdb.c [ 35%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.c.o -MF CMakeFiles/libgromacs.dir/fileio/timecontrol.c.o.d -o CMakeFiles/libgromacs.dir/fileio/timecontrol.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/timecontrol.c [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/tngio.cpp [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio_for_tools.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio_for_tools.cpp.o -MF CMakeFiles/libgromacs.dir/fileio/tngio_for_tools.cpp.o.d -o CMakeFiles/libgromacs.dir/fileio/tngio_for_tools.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/tngio_for_tools.cpp /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/pdbio.c: In function 'read_pdbfile': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/pdbio.c:761:26: warning: 'd' directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] 761 | sprintf(format, "%s%%d", form2); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/pdbio.c:44: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 3 and 34 bytes into a destination of size 32 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 35%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.c.o -MF CMakeFiles/libgromacs.dir/fileio/tpxio.c.o.d -o CMakeFiles/libgromacs.dir/fileio/tpxio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/tpxio.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/futil.cpp: In function 'FILE* gmx_ffopen(const char*, const char*)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/futil.cpp:296:31: warning: '%s' directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] 296 | sprintf(buf, "gunzip -c < %s", fn); | ^~ ...... 541 | ff = gunzip(buf, mode); | ~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/futil.cpp:41: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 13 and 268 bytes into a destination of size 256 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/futil.cpp:280:35: warning: '%s' directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] 280 | sprintf(buf, "uncompress -c < %s", fn); | ^~ ...... 534 | ff = uncompress(buf, mode); | ~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/futil.cpp:41: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 17 and 272 bytes into a destination of size 256 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trajectory_writing.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trajectory_writing.c.o -MF CMakeFiles/libgromacs.dir/fileio/trajectory_writing.c.o.d -o CMakeFiles/libgromacs.dir/fileio/trajectory_writing.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/trajectory_writing.c [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trnio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trnio.c.o -MF CMakeFiles/libgromacs.dir/fileio/trnio.c.o.d -o CMakeFiles/libgromacs.dir/fileio/trnio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/trnio.c [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.c.o -MF CMakeFiles/libgromacs.dir/fileio/trxio.c.o.d -o CMakeFiles/libgromacs.dir/fileio/trxio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/trxio.c [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.c.o -MF CMakeFiles/libgromacs.dir/fileio/vmdio.c.o.d -o CMakeFiles/libgromacs.dir/fileio/vmdio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/vmdio.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/trxio.c: In function 'write_trxframe_indexed': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/trxio.c:368:16: warning: this statement may fall through [-Wimplicit-fallthrough=] 368 | if (fr->bF) | ^ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/trxio.c:377:9: note: here 377 | case efXTC: | ^~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/trxio.c:445:16: warning: this statement may fall through [-Wimplicit-fallthrough=] 445 | if (fout) | ^ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/trxio.c:450:9: note: here 450 | case efXTC: | ^~~~ [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.c.o -MF CMakeFiles/libgromacs.dir/fileio/writeps.c.o.d -o CMakeFiles/libgromacs.dir/fileio/writeps.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/writeps.c [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.c.o -MF CMakeFiles/libgromacs.dir/fileio/xdrd.c.o.d -o CMakeFiles/libgromacs.dir/fileio/xdrd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/xdrd.c [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.c.o -MF CMakeFiles/libgromacs.dir/fileio/xtcio.c.o.d -o CMakeFiles/libgromacs.dir/fileio/xtcio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/fileio/xtcio.c [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -MF CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o.d -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/vmd_molfile/vmddlopen.c [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.c.o -MF CMakeFiles/libgromacs.dir/swap/swapcoords.c.o.d -o CMakeFiles/libgromacs.dir/swap/swapcoords.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/swap/swapcoords.c [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.c.o -MF CMakeFiles/libgromacs.dir/essentialdynamics/edsam.c.o.d -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/essentialdynamics/edsam.c [ 36%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.c.o -MF CMakeFiles/libgromacs.dir/pulling/pull.c.o.d -o CMakeFiles/libgromacs.dir/pulling/pull.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.c.o -MF CMakeFiles/libgromacs.dir/pulling/pull_rotation.c.o.d -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull_rotation.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.c.o -MF CMakeFiles/libgromacs.dir/pulling/pullutil.c.o.d -o CMakeFiles/libgromacs.dir/pulling/pullutil.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pullutil.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c: In function 'open_pull_out.part.0': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:200:33: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 200 | sprintf(buf, "%d", c+1); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 2 and 11 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:182:45: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] 182 | sprintf(buf, "%d %s%c", c+1, "c", 'X'+m); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 14 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:182:45: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] 182 | sprintf(buf, "%d %s%c", c+1, "c", 'X'+m); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 14 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:182:45: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] 182 | sprintf(buf, "%d %s%c", c+1, "c", 'X'+m); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 14 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:192:41: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] 192 | sprintf(buf, "%d %s%c", c+1, "d", 'X'+m); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 14 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:192:41: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] 192 | sprintf(buf, "%d %s%c", c+1, "d", 'X'+m); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 14 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:192:41: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] 192 | sprintf(buf, "%d %s%c", c+1, "d", 'X'+m); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/pulling/pull.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 5 and 14 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/essentialdynamics/edsam.c: In function 'nice_legend': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/essentialdynamics/edsam.c:2456:22: warning: ' (' directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 2456 | sprintf(tmp2, "%s (%s)", tmp, unit); | ^~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/essentialdynamics/edsam.c:41: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 4099) into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.c.o -MF CMakeFiles/libgromacs.dir/imd/imd.c.o.d -o CMakeFiles/libgromacs.dir/imd/imd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/imd/imd.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.c.o -MF CMakeFiles/libgromacs.dir/imd/imdsocket.c.o.d -o CMakeFiles/libgromacs.dir/imd/imdsocket.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/imd/imdsocket.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.c.o -MF CMakeFiles/libgromacs.dir/gmxana/anadih.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/anadih.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/anadih.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/autocorr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/autocorr.c.o -MF CMakeFiles/libgromacs.dir/gmxana/autocorr.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/autocorr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/autocorr.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.c.o -MF CMakeFiles/libgromacs.dir/gmxana/binsearch.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/binsearch.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/binsearch.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.c.o -MF CMakeFiles/libgromacs.dir/gmxana/cmat.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/cmat.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/cmat.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/correl.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/correl.c.o -MF CMakeFiles/libgromacs.dir/gmxana/correl.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/correl.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/correl.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.c.o -MF CMakeFiles/libgromacs.dir/gmxana/dens_filter.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/dens_filter.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.c.o -MF CMakeFiles/libgromacs.dir/gmxana/dlist.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/dlist.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/dlist.c [ 37%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/edittop.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/edittop.c.o -MF CMakeFiles/libgromacs.dir/gmxana/edittop.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/edittop.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/edittop.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.c.o -MF CMakeFiles/libgromacs.dir/gmxana/eigio.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/eigio.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/eigio.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/expfit.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/expfit.c.o -MF CMakeFiles/libgromacs.dir/gmxana/expfit.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/expfit.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/expfit.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.c.o -MF CMakeFiles/libgromacs.dir/gmxana/fitahx.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/fitahx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/fitahx.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/geminate.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/geminate.c.o -MF CMakeFiles/libgromacs.dir/gmxana/geminate.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/geminate.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/geminate.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_anadock.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_anaeig.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_analyze.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_angle.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_angle.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_bar.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_bar.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_bundle.c [ 38%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_chi.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_chi.c [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_cluster.c [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_clustsize.c [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_confrms.c [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_covar.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_covar.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_chi.c: In function 'gmx_chi': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_chi.c:786:50: warning: '.xvg' directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 786 | sprintf(sshisfile, "%s-%s.xvg", hisfile, sss[k]); | ^~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_chi.c:40: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 6 or more bytes (assuming 261) into a destination of size 256 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_current.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_current.c [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_density.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_density.c [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_densmap.c [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_densorder.cpp [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_dielectric.c [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_dipoles.cpp [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_disre.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_disre.c [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_do_dssp.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dos.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_dos.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_dyecoupl.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_dyndom.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_editconf.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_eneconv.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_enemat.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_energy.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_energy.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_filter.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_filter.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genion.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genion.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_genion.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_genion.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_genpr.c [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_gyrate.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_densorder.cpp: In function 'int gmx_densorder(int, char**)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_densorder.cpp:576:34: warning: '%4i' directive writing between 4 and 10 bytes into a region of size 5 [-Wformat-overflow=] 576 | sprintf(numbuf, "tblock: %4i", n); | ^~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_densorder.cpp:576:25: note: directive argument in the range [0, 2147483646] 576 | sprintf(numbuf, "tblock: %4i", n); | ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_densorder.cpp:43: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output between 13 and 19 bytes into a destination of size 13 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_h2order.c [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hbond.c [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_helix.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_helix.c In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hbond.c:49: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hbond.c: In function 'do_hbac': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/macros.h:71:34: warning: division 'sizeof (char **) / sizeof (char *)' does not compute the number of array elements [-Wsizeof-pointer-div] 71 | #define asize(a) ((int)(sizeof(a)/sizeof((a)[0]))) | ^ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hbond.c:3065:29: note: in expansion of macro 'asize' 3065 | xvgr_legend(fp, asize(legGem), (const char**)legGem, oenv); | ^~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hbond.c:2562:20: note: first 'sizeof' operand was declared here 2562 | static char **legGem; | ^~~~~~ [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_helixorient.c [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hydorder.c [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_lie.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_lie.c [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_make_edi.c [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_make_ndx.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hydorder.c: In function 'gmx_hydorder': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hydorder.c:517:26: warning: '%5d' directive writing between 5 and 10 bytes into a region of size 8 [-Wformat-overflow=] 517 | sprintf(numbuf, "%5d", n); | ^~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hydorder.c:517:25: note: directive argument in the range [0, 2147483646] 517 | sprintf(numbuf, "%5d", n); | ^~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hydorder.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 6 and 11 bytes into a destination of size 8 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_mdmat.c [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_mindist.c [ 41%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_mk_angndx.c [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_morph.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_morph.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_morph.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_morph.c [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_msd.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_msd.c [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_nmeig.c [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_nmens.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_make_ndx.c: In function 'gmx_make_ndx': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_make_ndx.c:1430:54: warning: '%s' directive writing up to 4095 bytes into a region of size 4093 [-Wformat-overflow=] 1430 | sprintf(gname, "%s_&_%s", gname1, gname2); | ^~ ~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_make_ndx.c:44: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 4 or more bytes (assuming 4099) into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_make_ndx.c:1425:54: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 1425 | sprintf(gname, "%s_%s", gname1, gname2); | ^ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_make_ndx.c:44: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 4097) into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_nmtraj.c [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_options.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_options.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_options.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_options.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_options.c [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_order.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_order.c [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_pme_error.cpp [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_polystat.c [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_potential.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_potential.c [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_principal.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_principal.c [ 42%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rama.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_rama.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rdf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rdf.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rdf.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rdf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_rdf.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rms.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_rms.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hbond.c: In function 'gmx_hbond': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hbond.c:2685:39: warning: '%i' directive output may be truncated writing between 1 and 10 bytes into a region of size 6 [-Wformat-truncation=] 2685 | snprintf(tmpstr, 7, "[%i]", i); | ^~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hbond.c:2685:37: note: directive argument in the range [0, 2147483646] 2685 | snprintf(tmpstr, 7, "[%i]", i); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/../fileio/../legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/../fileio/../legacyheaders/typedefs.h:46, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/../fileio/filenm.h:41, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/commandline/pargs.h:49, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_hbond.c:44: /usr/include/bits/stdio2.h:71:10: note: '__builtin___snprintf_chk' output between 4 and 13 bytes into a destination of size 7 71 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_rmsdist.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_rmsf.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_rotacf.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_rotmat.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_saltbr.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sans.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_sans.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_saxs.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sham.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_sham.c [ 43%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_sigeps.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_sorient.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_spatial.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_spol.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_spol.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_tcaf.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_traj.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_traj.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_trjcat.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_trjconv.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_trjorder.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_tune_pme.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_vanhove.c [ 45%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_velacc.c In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/readinp.h:41, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_tune_pme.c:52: In function 'strncpy', inlined from 'make_benchmark_tprs' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_tune_pme.c:1058:9: /usr/include/bits/string_fortified.h:95:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_tune_pme.c: In function 'make_benchmark_tprs': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_tune_pme.c:1058:47: note: length computed here 1058 | strncpy(fn_bench_tprs[j], fn_sim_tpr, strlen(fn_sim_tpr)-strlen(".tpr")); | ^~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_trjconv.c: In function 'gmx_trjconv': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_trjconv.c:1816:72: warning: '%s' directive writing up to 255 bytes into a region of size 233 [-Wformat-overflow=] 1816 | sprintf(title, "Generated by trjconv : %s t= %9.5f", | ^~ 1817 | top_title, fr.time); | ~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/copyrite.h:40, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_trjconv.c:44: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 37 and 599 bytes into a destination of size 256 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_trjconv.c:1830:59: warning: ' t= ' directive writing 4 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 1830 | sprintf(title, "%s t= %9.5f", top_title, frout.time); | ^~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/copyrite.h:40, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_trjconv.c:44: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 14 and 576 bytes into a destination of size 256 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wheel.c [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.c.o -MF CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_xpm2ps.c [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.c.o -MF CMakeFiles/libgromacs.dir/gmxana/hxprops.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/hxprops.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/hxprops.c [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/levenmar.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/levenmar.c.o -MF CMakeFiles/libgromacs.dir/gmxana/levenmar.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/levenmar.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.c.o -MF CMakeFiles/libgromacs.dir/gmxana/nrama.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/nrama.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/nrama.c [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.c.o -MF CMakeFiles/libgromacs.dir/gmxana/nsfactor.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/nsfactor.c [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/polynomials.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/polynomials.c.o -MF CMakeFiles/libgromacs.dir/gmxana/polynomials.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/polynomials.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/polynomials.c [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.c.o -MF CMakeFiles/libgromacs.dir/gmxana/powerspect.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/powerspect.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/powerspect.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c: In function 'mrqmin': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:530:9: warning: 'mrqcof' accessing 4 bytes in a region of size 0 [-Wstringop-overflow=] 530 | mrqcof(x, y, sig, ndata, a, ma, lista, mfit, alpha, beta, chisq, funcs); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:530:9: note: referencing argument 10 of type 'real *' {aka 'float *'} /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:443:13: note: in a call to function 'mrqcof' 443 | static void mrqcof(real x[], real y[], real sig[], int ndata, real a[], | ^~~~~~ In function 'free_vector', inlined from 'mrqmin' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:553:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:185:5: warning: 'free' called on pointer 'beta' with nonzero offset 4 [-Wfree-nonheap-object] 185 | free((char*) (v+nl)); | ^~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c: In function 'mrqmin': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:495:39: note: declared here 495 | static real *da, *atry, **oneda, *beta, ochisq; | ^~~~ In function 'free_vector', inlined from 'mrqmin' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:555:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:185:5: warning: 'free' called on pointer 'atry' with nonzero offset 4 [-Wfree-nonheap-object] 185 | free((char*) (v+nl)); | ^~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c: In function 'mrqmin': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:495:23: note: declared here 495 | static real *da, *atry, **oneda, *beta, ochisq; | ^~~~ In function 'free_matrix', inlined from 'mrqmin' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:556:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:206:9: warning: 'free' called on pointer '*(real **)((char *)oneda.16_406 = PHI +ivtmp*8)' with nonzero offset 4 [-Wfree-nonheap-object] 206 | free((char*) (m[i]+ncl)); | ^~~~~~~~~~~~~~~~~~~~~~~~ In function 'free_vector', inlined from 'mrqmin' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:553:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:185:5: warning: 'free' called on pointer 'beta' with nonzero offset 4 [-Wfree-nonheap-object] 185 | free((char*) (v+nl)); | ^~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c: In function 'mrqmin': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:495:39: note: declared here 495 | static real *da, *atry, **oneda, *beta, ochisq; | ^~~~ In function 'free_vector', inlined from 'mrqmin' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:555:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:185:5: warning: 'free' called on pointer 'atry' with nonzero offset 4 [-Wfree-nonheap-object] 185 | free((char*) (v+nl)); | ^~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c: In function 'mrqmin': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:495:23: note: declared here 495 | static real *da, *atry, **oneda, *beta, ochisq; | ^~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp: In function 'FILE* _Z13open_pdo_pipePKcP17t_UmbrellaOptionsPi.part.0(const char*, t_UmbrellaOptions*, gmx_bool*)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp:1860:28: warning: ' -c < ' directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] 1860 | sprintf(Buffer, "%s -c < %s", gunzip, fn); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp:49: /usr/include/bits/stdio2.h:38:34: note: '__builtin___sprintf_chk' output 7 or more bytes (assuming 1030) into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.c.o -MF CMakeFiles/libgromacs.dir/gmxana/pp2shift.c.o.d -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/pp2shift.c [ 46%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.c.o -MF CMakeFiles/libgromacs.dir/statistics/statistics.c.o.d -o CMakeFiles/libgromacs.dir/statistics/statistics.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/statistics/statistics.c [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/abstractdata.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/analysisdata.cpp In function 'free_matrix', inlined from 'mrqmin_new' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:668:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:208:5: warning: 'free' called on pointer 'oneda' with nonzero offset 8 [-Wfree-nonheap-object] 208 | free((char*) (m+nrl)); | ^~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c: In function 'mrqmin_new': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:625:46: note: declared here 625 | static real ochisq, *atry, *beta, *da, **oneda; | ^~~~~ In function 'free_vector', inlined from 'mrqmin_new' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:669:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:185:5: warning: 'free' called on pointer 'da' with nonzero offset 4 [-Wfree-nonheap-object] 185 | free((char*) (v+nl)); | ^~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c: In function 'mrqmin_new': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:625:40: note: declared here 625 | static real ochisq, *atry, *beta, *da, **oneda; | ^~ In function 'free_vector', inlined from 'mrqmin_new' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:670:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:185:5: warning: 'free' called on pointer 'beta' with nonzero offset 4 [-Wfree-nonheap-object] 185 | free((char*) (v+nl)); | ^~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c: In function 'mrqmin_new': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:625:33: note: declared here 625 | static real ochisq, *atry, *beta, *da, **oneda; | ^~~~ In function 'free_vector', inlined from 'mrqmin_new' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:671:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:185:5: warning: 'free' called on pointer 'atry' with nonzero offset 4 [-Wfree-nonheap-object] 185 | free((char*) (v+nl)); | ^~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c: In function 'mrqmin_new': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:625:26: note: declared here 625 | static real ochisq, *atry, *beta, *da, **oneda; | ^~~~ In function 'free_matrix', inlined from 'mrqmin_new' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:668:9: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/levenmar.c:206:9: warning: 'free' called on pointer '*(real **)((char *)oneda+ivtmp*8)' with nonzero offset 4 [-Wfree-nonheap-object] 206 | free((char*) (m[i]+ncl)); | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/arraydata.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/dataframe.cpp In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp:51: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void calc_cumulatives(t_UmbrellaWindow*, int, t_UmbrellaOptions*, const char*)' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp:1216:16: /usr/include/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp: In function 'void calc_cumulatives(t_UmbrellaWindow*, int, t_UmbrellaOptions*, const char*)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp:1216:64: note: length computed here 1216 | sprintf(fn, "%s_cumul.xvg", strncpy(buf, fnhist, strlen(fnhist)-4)); | ~~~~~~^~~~~~~~ [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/datamodule.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/datamodulemanager.cpp In file included from /usr/include/string.h:519, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp:51: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void print_histograms(const char*, t_UmbrellaWindow*, int, int, t_UmbrellaOptions*)' at /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp:1458:16: /usr/include/bits/string_fortified.h:95:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp: In function 'void print_histograms(const char*, t_UmbrellaWindow*, int, int, t_UmbrellaOptions*)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxana/gmx_wham.cpp:1458:63: note: length computed here 1458 | sprintf(fn, "%s_bs%d.xvg", strncpy(buf, fnhist, strlen(fnhist)-4), bs_index); | ~~~~~~^~~~~~~~ [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/dataproxy.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/datastorage.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/modules/average.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/modules/displacement.cpp /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/datastorage.cpp: In member function 'gmx::internal::AnalysisDataFrameBuilderPointer gmx::internal::AnalysisDataStorageImpl::getFrameBuilder()': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/datastorage.cpp:499:16: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 499 | return move(builder); | ~~~~^~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/datastorage.cpp:499:16: note: remove 'std::move' call /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/datastorage.cpp: In member function 'gmx::internal::AnalysisDataFrameBuilderPointer gmx::internal::AnalysisDataStorageFrameData::finishFrame(bool)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/datastorage.cpp:676:16: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 676 | return move(builder); | ~~~~^~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/datastorage.cpp:676:16: note: remove 'std::move' call [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/modules/frameaverager.cpp [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/modules/histogram.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/modules/lifetime.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -MF CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o.d -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/analysisdata/modules/plot.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -MF CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/centerofmass.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -MF CMakeFiles/libgromacs.dir/selection/compiler.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/compiler.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -MF CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/evaluate.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -MF CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/indexutil.cpp In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/keywords.h:47, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/compiler.cpp:290: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -MF CMakeFiles/libgromacs.dir/selection/mempool.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/mempool.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -MF CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o -MF CMakeFiles/libgromacs.dir/selection/params.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/params.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parser.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/parser.cpp.o -MF CMakeFiles/libgromacs.dir/selection/parser.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/parser.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parser.cpp /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp: In member function 'real gmx::AnalysisNeighborhoodSearch::minimumDistance(const gmx::AnalysisNeighborhoodPositions&) const': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp:935:32: warning: implicitly-declared 'constexpr gmx::{anonymous}::MindistAction::MindistAction(const gmx::{anonymous}::MindistAction&)' is deprecated [-Wdeprecated-copy] 935 | (void)pairSearch.searchNext(action); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.h:55, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp:58: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/../utility/common.h:89:20: note: because 'gmx::{anonymous}::MindistAction' has user-provided 'gmx::{anonymous}::MindistAction& gmx::{anonymous}::MindistAction::operator=(const gmx::{anonymous}::MindistAction&)' 89 | ClassName &operator=(const ClassName &) | ^~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp:797:9: note: in expansion of macro 'GMX_DISALLOW_ASSIGN' 797 | GMX_DISALLOW_ASSIGN(MindistAction); | ^~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp:643:60: note: initializing argument 1 of 'bool gmx::internal::AnalysisNeighborhoodPairSearchImpl::searchNext(Action) [with Action = gmx::{anonymous}::MindistAction]' 643 | bool AnalysisNeighborhoodPairSearchImpl::searchNext(Action action) | ~~~~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp: In member function 'gmx::AnalysisNeighborhoodPair gmx::AnalysisNeighborhoodSearch::nearestPoint(const gmx::AnalysisNeighborhoodPositions&) const': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp:949:32: warning: implicitly-declared 'constexpr gmx::{anonymous}::MindistAction::MindistAction(const gmx::{anonymous}::MindistAction&)' is deprecated [-Wdeprecated-copy] 949 | (void)pairSearch.searchNext(action); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.h:55, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp:58: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/../utility/common.h:89:20: note: because 'gmx::{anonymous}::MindistAction' has user-provided 'gmx::{anonymous}::MindistAction& gmx::{anonymous}::MindistAction::operator=(const gmx::{anonymous}::MindistAction&)' 89 | ClassName &operator=(const ClassName &) | ^~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp:797:9: note: in expansion of macro 'GMX_DISALLOW_ASSIGN' 797 | GMX_DISALLOW_ASSIGN(MindistAction); | ^~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/nbsearch.cpp:643:60: note: initializing argument 1 of 'bool gmx::internal::AnalysisNeighborhoodPairSearchImpl::searchNext(Action) [with Action = gmx::{anonymous}::MindistAction]' 643 | bool AnalysisNeighborhoodPairSearchImpl::searchNext(Action action) | ~~~~~~~^~~~~~ In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parser_internal.h:55, from parser.y:56: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/params.cpp:56: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -MF CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.cpp [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -MF CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/poscalc.cpp [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o -MF CMakeFiles/libgromacs.dir/selection/position.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/position.cpp [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -Wno-unused-parameter -Wno-deprecated-register -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner.cpp.o -MF CMakeFiles/libgromacs.dir/selection/scanner.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/scanner.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/scanner.cpp In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/keywords.h:47, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.cpp:238: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -MF CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/scanner_internal.cpp [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selection.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selection.cpp In file included from parser.y:74, from scanner.l:58: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call scanner.l: In function 'int _gmx_sel_yylex(YYSTYPE*, yyscan_t)': scanner.cpp:747:43: warning: this statement may fall through [-Wimplicit-fallthrough=] scanner.l:168:1: note: in expansion of macro 'YY_FATAL_ERROR' scanner.cpp:1034:2: note: here In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/scanner_internal.cpp:68: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selectioncollection.cpp [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selectionoption.cpp [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selectionoptionmanager.cpp At global scope: cc1plus: note: unrecognized command-line option '-Wno-deprecated-register' may have been intended to silence earlier diagnostics [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selelem.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selelem.cpp [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selhelp.cpp In file included from parser.y:74, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selectioncollection.cpp:69: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selmethod.cpp In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/keywords.h:47, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selelem.cpp:53: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selhelp.cpp: In function 'gmx::HelpTopicPointer gmx::createSelectionHelpTopic()': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selhelp.cpp:630:16: warning: redundant move in return statement [-Wredundant-move] 630 | return move(root); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selhelp.cpp:630:16: note: remove 'std::move' call [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -MF CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/selvalue.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_compare.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_distance.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_insolidangle.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_keywords.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_merge.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_permute.cpp In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/keywords.h:47, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_keywords.cpp:60: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_position.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_same.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -MF CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_simple.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -MF CMakeFiles/libgromacs.dir/selection/symrec.cpp.o.d -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/symrec.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/analysismodule.cpp [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/analysissettings.cpp In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/keywords.h:47, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_position.cpp:51: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/modules.cpp [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/modules/angle.cpp In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/keywords.h:47, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/sm_same.cpp:50: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h: In static member function 'static gmx::SelectionParserValueListPointer gmx::SelectionParserValue::createList(const gmx::SelectionParserValue&)': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: warning: moving a local object in a return statement prevents copy elision [-Wpessimizing-move] 126 | return move(list); | ~~~~^~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/selection/parsetree.h:126:24: note: remove 'std::move' call [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/modules/distance.cpp [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/modules/freevolume.cpp [ 51%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/nsc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/nsc.c.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/nsc.c.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/nsc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/modules/nsc.c [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/modules/sasa.cpp [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/modules/select.cpp [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -MF CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o.d -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/trajectoryanalysis/runnercommon.cpp [ 51%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/check.c.o -MF CMakeFiles/libgromacs.dir/tools/check.c.o.d -o CMakeFiles/libgromacs.dir/tools/check.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/tools/check.c [ 51%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/tools/compare.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/compare.c.o -MF CMakeFiles/libgromacs.dir/tools/compare.c.o.d -o CMakeFiles/libgromacs.dir/tools/compare.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/tools/compare.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.c.o -MF CMakeFiles/libgromacs.dir/tools/convert_tpr.c.o.d -o CMakeFiles/libgromacs.dir/tools/convert_tpr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/tools/convert_tpr.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.c.o -MF CMakeFiles/libgromacs.dir/tools/dump.c.o.d -o CMakeFiles/libgromacs.dir/tools/dump.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/tools/dump.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/atomprop.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/atomprop.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/atomprop.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/atomprop.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/atomprop.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/bondfree.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/bondfree.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/bondfree.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/bondfree.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/bondfree.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/calcgrid.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/calcgrid.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/calcgrid.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/calcgrid.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/calcgrid.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/calch.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/calch.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/calch.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/calch.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/calch.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/chargegroup.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/chargegroup.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/checkpoint.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/checkpoint.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/checkpoint.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/checkpoint.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/checkpoint.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/cinvsqrtdata.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/cinvsqrtdata.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/cinvsqrtdata.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/cinvsqrtdata.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/cinvsqrtdata.c [ 52%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/conformation-utilities.c [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/copyrite.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/copyrite.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/copyrite.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/copyrite.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/copyrite.cpp [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/disre.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/disre.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/disre.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/disre.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/disre.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/ewald_util.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/ewald_util.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/ewald_util.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/ewald_util.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/ewald_util.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_cpuid.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_cpuid.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/gmx_cpuid.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/gmx_cpuid.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/gmx_cpuid.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_detect_hardware.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_detect_hardware.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/gmx_detect_hardware.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/gmx_detect_hardware.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/gmx_detect_hardware.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_fatal.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_fatal.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/gmx_fatal.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/gmx_fatal.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/gmx_fatal.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_omp_nthreads.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_omp_nthreads.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/gmx_omp_nthreads.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/gmx_omp_nthreads.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/gmx_omp_nthreads.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_thread_affinity.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/gmx_thread_affinity.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/gmx_thread_affinity.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/gmx_thread_affinity.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/gmx_thread_affinity.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/ifunc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/ifunc.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/ifunc.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/ifunc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/ifunc.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/index.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/index.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/index.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/index.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/index.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/inputrec.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/inputrec.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/inputrec.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/inputrec.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/inputrec.c [ 53%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/invblock.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/invblock.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/invblock.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/invblock.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/invblock.c [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/main.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/main.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/main.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/main.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/main.cpp [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/md_logging.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/md_logging.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/md_logging.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/md_logging.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/md_logging.c [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/mshift.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/mshift.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/mshift.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/mshift.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/mshift.c [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/mtop_util.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/mtop_util.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/mtop_util.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/mtop_util.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/mtop_util.c [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/mvdata.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/mvdata.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/mvdata.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/mvdata.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/mvdata.c [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/names.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/names.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/names.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/names.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/names.c [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/network.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/network.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/network.c [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nrnb.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nrnb.c [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/oenv.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/oenv.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/oenv.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/oenv.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/oenv.cpp [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/orires.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/orires.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/orires.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/orires.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/orires.c [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/pbc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/pbc.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/pbc.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/pbc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/pbc.c [ 54%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/physics.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/physics.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/physics.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/physics.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/physics.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/princ.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/princ.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/princ.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/princ.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/princ.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/rbin.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/rbin.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/rbin.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/rbin.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/rbin.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/readinp.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/readinp.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/readinp.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/readinp.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/readinp.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/restcbt.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/restcbt.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/restcbt.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/restcbt.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/restcbt.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/rmpbc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/rmpbc.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/rmpbc.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/rmpbc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/rmpbc.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/readinp.c: In function 'read_inpfile': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/readinp.c:191:78: warning: '%s' directive writing up to 4095 bytes into a region of size 4065 [-Wformat-overflow=] 191 | "Overriding existing parameter \"%s\" with value \"%s\"\n", | ^~ 192 | lbuf, rbuf); | ~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/readinp.c:41: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 48 and 8238 bytes into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/readinp.c:181:58: warning: '%s' directive writing up to 4095 bytes into a region of size 4085 [-Wformat-overflow=] 181 | "Parameter \"%s\" doubly defined (and multiple assignments not allowed)\n", | ^~ 182 | lbuf); | ~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/readinp.c:41: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 68 and 4163 bytes into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/readinp.c:153:54: warning: '%s' directive writing up to 4095 bytes into a region of size 4085 [-Wformat-overflow=] 153 | "Parameter \"%s\" should either be %s or %s\n", | ^~ 154 | lbuf, | ~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/readinp.c:41: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output 36 or more bytes (assuming 4131) into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/sfactor.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/sfactor.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/sfactor.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/sfactor.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/sfactor.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/sighandler.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/sighandler.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/sighandler.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/sighandler.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/sighandler.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/splitter.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/splitter.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/splitter.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/splitter.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/splitter.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/symtab.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/symtab.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/symtab.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/symtab.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/symtab.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/topsort.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/topsort.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/topsort.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/topsort.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/topsort.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/topsort.c: In function 'ip_pert': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/topsort.c:135:13: warning: this statement may fall through [-Wimplicit-fallthrough=] 135 | gmx_fatal(FARGS, "Function type %s does not support currentely free energy calculations", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | interaction_function[ftype].longname); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/topsort.c:137:9: note: here 137 | default: | ^~~~~~~ [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/txtdump.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/txtdump.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/txtdump.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/txtdump.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/txtdump.c [ 56%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/typedefs.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/typedefs.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/typedefs.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/typedefs.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/typedefs.c [ 57%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/viewit.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/viewit.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/viewit.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/viewit.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/viewit.c [ 57%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/warninp.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/warninp.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/warninp.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/warninp.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/warninp.c [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/xvgr.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/xvgr.cpp.o -MF CMakeFiles/libgromacs.dir/gmxlib/xvgr.cpp.o.d -o CMakeFiles/libgromacs.dir/gmxlib/xvgr.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/xvgr.cpp [ 57%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.c.o [ 57%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_free_energy.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_generic.c [ 57%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_adress.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_adress.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_adress.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_adress.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_generic_adress.c [ 57%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_generic_cg.c [ 57%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c [ 57%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o.d -o 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include 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CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c [ 58%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o.d -o 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-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c [ 59%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c [ 59%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o.d -o 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c [ 59%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c [ 59%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c [ 59%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c [ 59%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c [ 59%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c [ 59%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c [ 59%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c [ 60%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops 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CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c [ 61%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c [ 61%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o cd 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o.d -o 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c [ 61%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c [ 61%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -MF 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c [ 61%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c [ 61%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -MF 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c [ 61%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c [ 62%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c [ 62%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c [ 62%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c [ 62%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o.d -o 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-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c [ 62%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c [ 62%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c [ 62%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o cd 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o.d -o 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-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c [ 63%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o.d -o 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-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c [ 64%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o cd 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-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c [ 64%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o.d -o 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c [ 64%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c [ 64%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c [ 64%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c [ 64%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c [ 65%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c [ 65%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o.d -o 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c [ 65%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c [ 65%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c [ 65%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c [ 65%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c [ 65%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c [ 65%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c [ 67%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c [ 68%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o [ 69%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c [ 70%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops 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-I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c [ 71%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c [ 72%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders 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Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.c.o -MF CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.c.o.d -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/gmxlib/nonbonded/nonbonded.c [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/adress.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/adress.c.o -MF CMakeFiles/libgromacs.dir/mdlib/adress.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/adress.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/adress.c [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.c.o -MF CMakeFiles/libgromacs.dir/mdlib/calcmu.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/calcmu.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/calcmu.c [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.c.o -MF CMakeFiles/libgromacs.dir/mdlib/calcvir.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/calcvir.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/calcvir.c [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/clincs.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/clincs.c.o -MF CMakeFiles/libgromacs.dir/mdlib/clincs.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/clincs.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/clincs.c [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.c.o -MF CMakeFiles/libgromacs.dir/mdlib/constr.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/constr.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/constr.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/calcvir.c:223:36: warning: argument 7 of type 'real[3][3]' {aka 'float[3][3]'} with mismatched bound [-Warray-parameter=] 223 | t_graph *g, matrix box) | ~~~~~~~^~~ In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/calcvir.c:43: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/force.h:62:34: note: previously declared as 'real[][3]' {aka 'float[][3]'} 62 | t_graph *g, rvec shift_vec[]); | ~~~~~^~~~~~~~~~~ [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.c.o -MF CMakeFiles/libgromacs.dir/mdlib/coupling.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/coupling.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/coupling.c [ 73%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/csettle.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/csettle.c.o -MF CMakeFiles/libgromacs.dir/mdlib/csettle.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/csettle.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/csettle.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec.c.o -MF CMakeFiles/libgromacs.dir/mdlib/domdec.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/domdec.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/domdec.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_box.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_box.c.o -MF CMakeFiles/libgromacs.dir/mdlib/domdec_box.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/domdec_box.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/domdec_box.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_con.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_con.c.o -MF CMakeFiles/libgromacs.dir/mdlib/domdec_con.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/domdec_con.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/domdec_con.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_network.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_network.c.o -MF CMakeFiles/libgromacs.dir/mdlib/domdec_network.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/domdec_network.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/domdec_network.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_setup.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_setup.c.o -MF CMakeFiles/libgromacs.dir/mdlib/domdec_setup.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/domdec_setup.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/domdec_setup.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_top.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/domdec_top.c.o -MF CMakeFiles/libgromacs.dir/mdlib/domdec_top.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/domdec_top.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/domdec_top.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.c.o -MF CMakeFiles/libgromacs.dir/mdlib/ebin.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/ebin.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/ebin.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ewald.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ewald.c.o -MF CMakeFiles/libgromacs.dir/mdlib/ewald.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/ewald.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/ewald.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.c.o -MF CMakeFiles/libgromacs.dir/mdlib/expanded.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/expanded.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/expanded.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/expanded.c: In function 'CheckIfDoneEquilibrating': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/expanded.c:325:16: warning: this statement may fall through [-Wimplicit-fallthrough=] 325 | if (!(EWL(expand->elamstats) || expand->elamstats == elamstatsMINVAR)) | ^ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/expanded.c:343:9: note: here 343 | default: | ^~~~~~~ [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.c.o -MF CMakeFiles/libgromacs.dir/mdlib/force.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/force.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/force.c [ 74%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.c.o -MF CMakeFiles/libgromacs.dir/mdlib/forcerec.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/forcerec.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/forcerec.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/genborn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/genborn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/genborn.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/force.c:167:35: warning: argument 25 of type 'real[][3]' {aka 'float[][3]'} with mismatched bound [-Warray-parameter=] 167 | rvec mu_tot[], | ~~~~~~~~~~~^~~~~~~~ In file included from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/force.c:50: /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/force.h:280:44: note: previously declared as 'real[2][3]' {aka 'float[2][3]'} 280 | rvec mu_tot[2], | ~~~~~~~~~~~~~^~~~~~~~~ [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.c.o -MF CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/genborn_allvsall.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall_sse2_double.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall_sse2_double.c.o -MF CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall_sse2_double.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall_sse2_double.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/genborn_allvsall_sse2_double.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall_sse2_single.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall_sse2_single.c.o -MF CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall_sse2_single.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall_sse2_single.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/genborn_allvsall_sse2_single.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_sse2_double.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_sse2_double.c.o -MF CMakeFiles/libgromacs.dir/mdlib/genborn_sse2_double.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/genborn_sse2_double.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/genborn_sse2_double.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_sse2_single.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/genborn_sse2_single.c.o -MF CMakeFiles/libgromacs.dir/mdlib/genborn_sse2_single.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/genborn_sse2_single.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/genborn_sse2_single.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.c.o -MF CMakeFiles/libgromacs.dir/mdlib/groupcoord.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/groupcoord.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/init.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/init.c.o -MF CMakeFiles/libgromacs.dir/mdlib/init.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/init.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/init.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/iteratedconstraints.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/iteratedconstraints.c.o -MF CMakeFiles/libgromacs.dir/mdlib/iteratedconstraints.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/iteratedconstraints.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/iteratedconstraints.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders 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/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatom.c.o -MF CMakeFiles/libgromacs.dir/mdlib/mdatom.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdatom.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdatom.c [ 75%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.c.o -MF CMakeFiles/libgromacs.dir/mdlib/mdebin.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdebin.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdebin.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.c.o -MF CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdebin_bar.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/minimize.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/minimize.c.o -MF CMakeFiles/libgromacs.dir/mdlib/minimize.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/minimize.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/minimize.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_atomdata.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdebin.c: In function 'open_dhdl': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdebin.c:805:47: warning: '%s' directive writing up to 4095 bytes into a region of size between 4069 and 4079 [-Wformat-overflow=] 805 | sprintf(&(buf[bufplace]), "%s %d: %s = %s", | ^~ 806 | lambdastate, fep->init_fep_state, 807 | lambda_name_str, lambda_vec_str); | ~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/typedefs.h:46, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdebin.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 21 and 8221 bytes into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdebin.c:928:46: warning: '%s' directive writing up to 4095 bytes into a region of size 4077 [-Wformat-overflow=] 928 | nps = sprintf(buf, "%s %s to %s", deltag, lambda, lambda_vec_str); | ^~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/typedefs.h:46, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdebin.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 20 and 4115 bytes into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdebin.c:924:43: warning: '%s' directive writing up to 4095 bytes into a region of size 4080 [-Wformat-overflow=] 924 | nps = sprintf(buf, "%s %s %s", deltag, lambda, lambda_vec_str); | ^~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/sysstuff.h:44, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders/typedefs.h:46, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/mdebin.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 17 and 4112 bytes into a destination of size 4096 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.c [ 76%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.c [ 78%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.c [ 79%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.c [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.c.o [ 80%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.c.o [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.c.o [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.c [ 81%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.c.o [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.c [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.c.o [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.c [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.c [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.c.o [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.c [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.c.o [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.c [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.c [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.c [ 82%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.c [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.c.o [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.c [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.c [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.c.o [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.c [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.c.o [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.c [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.c [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.c.o [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.c [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.c [ 83%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.c [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.c.o [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.c [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.c [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.c [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.c [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.c.o [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.c [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.c.o [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.c [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.c [ 84%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.c [ 85%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.c.o [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.c [ 86%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.c.o [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.c [ 87%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.c [ 89%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.c [ 90%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.c [ 91%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.c [ 91%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.c [ 91%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.c [ 91%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.c [ 91%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.c.o [ 91%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.c [ 91%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.c [ 91%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.c [ 91%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.c.o [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.c.o [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.c.o [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.c [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.c.o [ 92%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.c [ 93%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.c [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.c.o [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.c.o [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.c [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.c.o [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.c cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.c [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn.c [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nbnxn_search.c [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nlistheuristics.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nlistheuristics.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nlistheuristics.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nlistheuristics.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nlistheuristics.c [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.c.o -MF CMakeFiles/libgromacs.dir/mdlib/ns.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/ns.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/ns.c [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.c.o -MF CMakeFiles/libgromacs.dir/mdlib/nsgrid.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/nsgrid.c [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.c.o -MF CMakeFiles/libgromacs.dir/mdlib/perf_est.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/perf_est.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/perf_est.c [ 94%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/pme.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/pme.c.o -MF CMakeFiles/libgromacs.dir/mdlib/pme.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/pme.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/pme.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/pme_pp.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/pme_pp.c.o -MF CMakeFiles/libgromacs.dir/mdlib/pme_pp.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/pme_pp.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/pme_pp.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.c.o -MF CMakeFiles/libgromacs.dir/mdlib/qm_gamess.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/qm_gamess.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.c.o -MF CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/qm_gaussian.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.c.o -MF CMakeFiles/libgromacs.dir/mdlib/qm_mopac.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/qm_mopac.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.c.o -MF CMakeFiles/libgromacs.dir/mdlib/qm_orca.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/qm_orca.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.c.o -MF CMakeFiles/libgromacs.dir/mdlib/qmmm.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/qmmm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/qmmm.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.c.o -MF CMakeFiles/libgromacs.dir/mdlib/rf_util.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/rf_util.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/rf_util.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shakef.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shakef.c.o -MF CMakeFiles/libgromacs.dir/mdlib/shakef.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/shakef.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/shakef.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.c.o -MF CMakeFiles/libgromacs.dir/mdlib/shellfc.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/shellfc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/shellfc.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.c.o -MF CMakeFiles/libgromacs.dir/mdlib/sim_util.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/sim_util.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/sim_util.c [ 95%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.c.o -MF CMakeFiles/libgromacs.dir/mdlib/stat.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/stat.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/stat.c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/sim_util.c: In function 'print_time': /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/sim_util.c:133:31: warning: '%s' directive writing up to 4095 bytes into a region of size 48 [-Wformat-overflow=] 133 | sprintf(buf, "%s", timebuf); | ^~ ~~~~~~~ In file included from /usr/include/stdio.h:866, from /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/sim_util.c:43: /usr/include/bits/stdio2.h:38:10: note: '__builtin___sprintf_chk' output between 1 and 4096 bytes into a destination of size 48 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tables.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tables.c.o -MF CMakeFiles/libgromacs.dir/mdlib/tables.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/tables.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/tables.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.c.o -MF CMakeFiles/libgromacs.dir/mdlib/tgroup.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/tgroup.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/tgroup.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tpi.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tpi.c.o -MF CMakeFiles/libgromacs.dir/mdlib/tpi.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/tpi.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/tpi.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.c.o -MF CMakeFiles/libgromacs.dir/mdlib/update.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/update.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/update.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.c.o -MF CMakeFiles/libgromacs.dir/mdlib/vcm.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/vcm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/vcm.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.c.o -MF CMakeFiles/libgromacs.dir/mdlib/vsite.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/vsite.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/vsite.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.c.o -MF CMakeFiles/libgromacs.dir/mdlib/wall.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/wall.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/wall.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.c.o -MF CMakeFiles/libgromacs.dir/mdlib/wnblist.c.o.d -o CMakeFiles/libgromacs.dir/mdlib/wnblist.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/mdlib/wnblist.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/errhandler.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/tmpi_malloc.c [ 96%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/atomic.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/lock.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/pthreads.c [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/system_error.cpp [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/alltoall.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/alltoall.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/alltoall.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/alltoall.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/alltoall.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_protocol.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_protocol.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_protocol.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_protocol.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/p2p_protocol.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/barrier.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/barrier.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/barrier.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/barrier.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/barrier.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_send_recv.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_send_recv.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_send_recv.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_send_recv.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/p2p_send_recv.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/bcast.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/bcast.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/bcast.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/bcast.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/bcast.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_wait.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_wait.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_wait.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_wait.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/p2p_wait.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/collective.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/collective.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/collective.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/collective.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/collective.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/profile.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/profile.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/profile.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/profile.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/profile.c [ 97%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/comm.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/comm.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/comm.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/comm.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/comm.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/reduce.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/event.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/event.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/event.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/event.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/event.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce_fast.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce_fast.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce_fast.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce_fast.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/reduce_fast.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/gather.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/gather.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/gather.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/gather.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/gather.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scatter.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scatter.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scatter.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scatter.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/scatter.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/group.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/group.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/group.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/group.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/group.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_init.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_init.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_init.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_init.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/tmpi_init.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/topology.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/topology.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/topology.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/topology.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/topology.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/list.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/list.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/list.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/list.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/list.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/type.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/type.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/type.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/type.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/type.c [ 98%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/scan.c [100%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/numa_malloc.c [100%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o -MF CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o.d -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/src/once.c [100%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cc -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/tng_io/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wno-maybe-uninitialized -Wextra -Wno-missing-field-initializers -Wno-sign-compare -Wpointer-arith -Wall -Wno-unused -Wunused-value -Wunused-parameter -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -MD -MT src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o -MF CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o.d -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility/baseversion-gen.c [100%] Linking CXX shared library ../../lib/libgromacs.so cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -shared -Wl,-soname,libgromacs.so.0 -o ../../lib/libgromacs.so.0.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp -Wl,-rpath,::::::::::::::::::::: -ldl -lrt -lm -lz -lfftw3f -lpthread -fopenmp cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.0.0.0 ../../lib/libgromacs.so.0 ../../lib/libgromacs.so gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' [100%] Built target libgromacs /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/iurt/rpmbuild/BUILD/gromacs-5.0.7 /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/share/template /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/share/template /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/iurt/rpmbuild/BUILD/gromacs-5.0.7 /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' /usr/bin/gmake -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build /usr/bin/gmake -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' gmake[2]: Entering directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/legacymodules.cpp.o [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/gmx.cpp.o cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/share/template && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -MD -MT share/template/CMakeFiles/template.dir/template.cpp.o -MF CMakeFiles/template.dir/template.cpp.o.d -o CMakeFiles/template.dir/template.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/share/template/template.cpp cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fopenmp -MD -MT src/programs/CMakeFiles/gmx.dir/legacymodules.cpp.o -MF CMakeFiles/gmx.dir/legacymodules.cpp.o.d -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs/legacymodules.cpp cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/c++ -DBOOST_NO_TYPEID -DHAVE_CONFIG_H -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/boost -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/gromacs/legacyheaders -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/gromacs/utility -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/external/thread_mpi/include -I/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -fopenmp -MD -MT src/programs/CMakeFiles/gmx.dir/gmx.cpp.o -MF CMakeFiles/gmx.dir/gmx.cpp.o.d -o CMakeFiles/gmx.dir/gmx.cpp.o -c /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/src/programs/gmx.cpp [100%] Linking CXX executable ../../bin/gmx cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -rdynamic CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/md.c.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/membed.c.o CMakeFiles/mdrun_objlib.dir/mdrun/pme_loadbal.c.o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.c.o CMakeFiles/mdrun_objlib.dir/mdrun/runner.c.o CMakeFiles/view_objlib.dir/view/view.cpp.o -o ../../bin/gmx -Wl,-rpath,/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/lib: ../../lib/libgromacs.so.0.0.0 -fopenmp -ldl -lrt -lm -lz -lfftw3f -lpthread gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' [100%] Built target gmx [100%] Linking CXX executable ../../bin/template cd /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++0x -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wextra -Wno-missing-field-initializers -Wpointer-arith -Wall -Wno-unused-function -DNDEBUG -fomit-frame-pointer -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -rdynamic CMakeFiles/template.dir/template.cpp.o -o ../../bin/template -Wl,-rpath,/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/lib ../../lib/libgromacs.so.0.0.0 -fopenmp -ldl -lrt -lm -lz -lfftw3f -lpthread gmake[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' [100%] Built target template gmake[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build' /usr/bin/cmake -E cmake_progress_start /home/iurt/rpmbuild/BUILD/gromacs-5.0.7/build/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.Ee3v04 + umask 022 + cd /home/iurt/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64 '!=' / ']' + rm -rf /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64 ++ dirname /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64 + mkdir -p /home/iurt/rpmbuild/BUILDROOT + mkdir /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64 + cd gromacs-5.0.7 + '[' 1 -eq 1 ']' + 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Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/tip4p.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/ha-shift.dat -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amberGS.ff -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amberGS.ff/dna.arn -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amberGS.ff/tip4pew.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amberGS.ff/dna.r2b -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amberGS.ff/dna.hdb -- Installing: 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/home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/amber99sb-ildn.ff/gbsa.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/spc216.gro -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/sfactor.dat -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/residues.dtd -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/spce.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/cb-shift.dat -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a6.ff -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp -- Installing: 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/home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/GMXRC.csh -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/demux.pl -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/xplor2gmx.pl -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/commandline.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/onlinehelp.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/options.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/selection.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/trajectoryanalysis.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/utility.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/version.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/lib64/libgromacs.so.0.0.0 -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/lib64/libgromacs.so.0 -- Set runtime path of "/home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/lib64/libgromacs.so.0.0.0" to "$ORIGIN/..//usr/lib64" -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/lib64/libgromacs.so -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/lib64/pkgconfig/libgromacs.pc -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/commandline/cmdlinehelpwriter.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/commandline/cmdlineinit.h -- 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/home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/fcdata.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/force_flags.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/forcerec.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/genborn.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/globsig.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/graph.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/group.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/hw_info.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/idef.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/ifunc.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/inputrec.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/interaction_const.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/ishift.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/iteratedconstraints.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/matrix.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/mdatom.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/membedt.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/nb_verlet.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/nblist.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/nbnxn_cuda_types_ext.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/nbnxn_pairlist.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/nlistheuristics.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/nrnb.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/ns.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/nsgrid.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/oenv.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/pbc.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/qmmmrec.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/shellfc.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/simple.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/state.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/symtab.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/legacyheaders/types/topology.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/gmxana/gstat.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/abstractdata.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/analysisdata.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/arraydata.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/dataframe.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/datamodule.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/modules/average.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/modules/displacement.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/modules/histogram.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/modules/lifetime.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/analysisdata/modules/plot.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/selection/nbsearch.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/selection/indexutil.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/selection/position.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/selection/selection.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/selection/selectioncollection.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/selection/selectionenums.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/selection/selectionoption.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/selection/selectionoptionmanager.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/gmx -- Set runtime path of "/home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/gmx" to "$ORIGIN/..//usr/lib64" -- Up-to-date: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/gmx-completion.bash -- Installing: /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/gmx-completion-gmx.bash -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/mdrun -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/gmxcheck -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/gmxdump -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/grompp -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/pdb2gmx -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/tpbconv -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_protonate -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_x2top -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/do_dssp -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/editconf -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/eneconv -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/genbox -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/genconf -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/genion -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/genrestr -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/make_edi -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/make_ndx -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/mk_angndx -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/trjcat -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/trjconv -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/trjorder -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/xpm2ps -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_anadock -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_anaeig -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_analyze -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_angle -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_bar -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_bond -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_bundle -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_chi -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_cluster -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_clustsize -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_confrms -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_covar -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_current -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_density -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_densmap -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_densorder -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_dielectric -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_dipoles -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_disre -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_dist -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_dos -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_dyecoupl -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_dyndom -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_enemat -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_energy -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_filter -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_gyrate -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_h2order -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_hbond -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_helix -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_helixorient -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_hydorder -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_lie -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_mdmat -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_mindist -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_morph -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_msd -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_nmeig -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_nmens -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_nmtraj -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_options -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_order -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_pme_error -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_polystat -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_potential -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_principal -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_rama -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_rdf -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_rms -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_rmsdist -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_rmsf -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_rotacf -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_rotmat -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_saltbr -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_sans -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_sas -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_saxs -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_select -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_sgangle -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_sham -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_sigeps -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_sorient -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_spatial -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_spol -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_tcaf -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_traj -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_tune_pme -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_vanhove -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_velacc -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_wham -- Installing: Creating symbolic link /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/g_wheel + /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 5.0.7-3.mga9 --unique-debug-suffix -5.0.7-3.mga9.aarch64 --unique-debug-src-base gromacs-5.0.7-3.mga9.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /home/iurt/rpmbuild/BUILD/gromacs-5.0.7 extracting debug info from /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/bin/gmx extracting debug info from /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/lib64/libgromacs.so.0.0.0 dwz: ./usr/bin/gmx-5.0.7-3.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/libgromacs.so.0.0.0-5.0.7-3.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: Too few files for multifile optimization original debug info size: 60108kB, size after compression: 60108kB /usr/bin/sepdebugcrcfix: Updated 0 CRC32s, 2 CRC32s did match. cpio: build/src/gromacs/parser.cpp: Cannot stat: No such file or directory cpio: build/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: build/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: build/src/gromacs/scanner.cpp: Cannot stat: No such file or directory cpio: build/src/gromacs/scanner.l: Cannot stat: No such file or directory cpio: build/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory 43829 blocks + /usr/lib/rpm/check-buildroot + '[' -n '' ']' + /usr/share/spec-helper/clean_files + '[' -n '' ']' + /usr/share/spec-helper/compress_files .xz + '[' -n '' ']' + /usr/share/spec-helper/relink_symlinks + '[' -n '' ']' + /usr/share/spec-helper/clean_perl + '[' -n '' ']' + /usr/share/spec-helper/lib_symlinks + '[' -n '' ']' + /usr/share/spec-helper/gprintify + '[' -n '' ']' + /usr/share/spec-helper/fix_mo + '[' -n '' ']' + /usr/share/spec-helper/fix_pamd + '[' -n '' ']' + /usr/share/spec-helper/remove_info_dir + '[' -n '' ']' + /usr/share/spec-helper/fix_eol + '[' -n '' ']' + /usr/share/spec-helper/check_desktop_files + '[' -n '' ']' + /usr/share/spec-helper/check_elf_files + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python3 1 0 + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/bin/GMXRC.csh is executable but has no shebang, removing executable bit *** WARNING: ./usr/bin/GMXRC.zsh is executable but has no shebang, removing executable bit *** WARNING: ./usr/bin/GMXRC.bash is executable but has no shebang, removing executable bit *** WARNING: ./usr/bin/GMXRC is executable but has no shebang, removing executable bit Processing files: gromacs-5.0.7-3.mga9.aarch64 Executing(%doc): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.yB713L + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd gromacs-5.0.7 + DOCDIR=/home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/doc/gromacs + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/doc/gromacs + cp -pr AUTHORS /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/doc/gromacs + cp -pr COPYING /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/doc/gromacs + cp -pr README /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64/usr/share/doc/gromacs + RPM_EC=0 ++ jobs -p + exit 0 warning: Found bdb_ro Packages database while attempting sqlite backend: using bdb_ro backend. warning: Found bdb_ro Packages database while attempting sqlite backend: using bdb_ro backend. Provides: gromacs = 5.0.7-3.mga9 gromacs(aarch-64) = 5.0.7-3.mga9 libgromacs.so.0()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.17)(64bit) libfftw3f.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgromacs.so.0()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0)(64bit) perl-base >= 2:5.34.0 Processing files: gromacs-devel-5.0.7-3.mga9.aarch64 Provides: devel(libgromacs(64bit)) gromacs-devel = 5.0.7-3.mga9 gromacs-devel(aarch-64) = 5.0.7-3.mga9 pkgconfig(libgromacs) = 5.0.7 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: devel(libdl(64bit)) devel(libfftw3f(64bit)) devel(libgcc_s(64bit)) devel(libgomp(64bit)) devel(libm(64bit)) devel(libstdc++(64bit)) devel(libz(64bit)) pkgconfig pkgconfig(fftw3f) Conflicts: gromacs < 4.5.3-2 Processing files: gromacs-debugsource-5.0.7-3.mga9.aarch64 Provides: gromacs-debugsource = 5.0.7-3.mga9 gromacs-debugsource(aarch-64) = 5.0.7-3.mga9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: gromacs-debuginfo-5.0.7-3.mga9.aarch64 Provides: debuginfo(build-id) = ba46ef4bd814794b81424f214ab4a2288d5cf5b4 debuginfo(build-id) = dd9c43240721728c2b74603cdeaaecbe46eb0570 gromacs-debuginfo = 5.0.7-3.mga9 gromacs-debuginfo(aarch-64) = 5.0.7-3.mga9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: gromacs-debugsource(aarch-64) = 5.0.7-3.mga9 Checking for unpackaged file(s): /usr/lib/rpm/check-files /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64 Wrote: /home/iurt/rpmbuild/RPMS/aarch64/gromacs-devel-5.0.7-3.mga9.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/gromacs-5.0.7-3.mga9.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/gromacs-debugsource-5.0.7-3.mga9.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/gromacs-debuginfo-5.0.7-3.mga9.aarch64.rpm Executing(%clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.rImj8w + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd gromacs-5.0.7 + /usr/bin/rm -rf /home/iurt/rpmbuild/BUILDROOT/gromacs-5.0.7-3.mga9.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(--clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.oHHpBT + umask 022 + cd /home/iurt/rpmbuild/BUILD + rm -rf gromacs-5.0.7 + RPM_EC=0 ++ jobs -p + exit 0 D: [iurt_root_command] Success!