D: [iurt_root_command] chroot warning: Found bdb_ro Packages database while attempting sqlite backend: using bdb_ro backend. warning: Macro expanded in comment on line 3: %{_libdir}/R/bin Installing /home/iurt/rpmbuild/SRPMS/R-base-4.0.5-1.mga9.src.rpm Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.1c589G + umask 022 + cd /home/iurt/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + cd /home/iurt/rpmbuild/BUILD + rm -rf R-4.0.5 + /usr/bin/gzip -dc /home/iurt/rpmbuild/SOURCES/R-4.0.5.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd R-4.0.5 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/bin/cat /home/iurt/rpmbuild/SOURCES/R-2.15.3-menu.patch + /usr/bin/cat /home/iurt/rpmbuild/SOURCES/R-3.3.0-slow-test.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/bin/cat /home/iurt/rpmbuild/SOURCES/R-3.6.3-date-test.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.6csvo5 + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd R-4.0.5 + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' ++ type -p xdg-open + export R_BROWSER=/usr/bin/xdg-open + R_BROWSER=/usr/bin/xdg-open ++ type -p xdg-open + export R_PDFVIEWER=/usr/bin/xdg-open + R_PDFVIEWER=/usr/bin/xdg-open + export R_PRINTCMD=lpr + R_PRINTCMD=lpr ++ echo '-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' ++ sed -e s/-ffast-math/-fno-fast-math/g + export 'CFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'CFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'FFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'CXXFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'FCFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export 'OBJCFLAGS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + OBJCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export F77=gfortran + F77=gfortran + export 'JAVA_HOME=%{java_home}' + JAVA_HOME='%{java_home}' + export FPICFLAGS=-fPIC + FPICFLAGS=-fPIC + export CPICFLAGS=-fPIC + CPICFLAGS=-fPIC + unset DISPLAY + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' + export FCFLAGS + LDFLAGS=' -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags' + export LDFLAGS + CONFIGURE_TOP=. + '[' 1 = 1 ']' ++ find . -name config.guess -o -name config.sub + for i in $(find ${CONFIGURE_TOP} -name config.guess -o -name config.sub) ++ basename ./tools/config.sub + '[' -f /usr/lib/rpm/mageia/config.sub ']' ++ basename ./tools/config.sub + cp -af /usr/lib/rpm/mageia/config.sub ./tools/config.sub + for i in $(find ${CONFIGURE_TOP} -name config.guess -o -name config.sub) ++ basename ./tools/config.guess + '[' -f /usr/lib/rpm/mageia/config.guess ']' ++ basename ./tools/config.guess + cp -af /usr/lib/rpm/mageia/config.guess ./tools/config.guess + /usr/lib/rpm/mageia/force-as-needed-for-shared-lib-in-libtool Forcing -Wl,--as-needed in configure/libtool to workaround libtool bug (cf http://lists.gnu.org/archive/html/libtool-patches/2004-06/msg00002.html) + /usr/lib/rpm/mageia/fix-libtool-ltmain-from-overlinking + /usr/lib/rpm/mageia/fix-libtool-from-moving-options-after-libs . Fixing libtool inside configure to pass -Wl,xxx options before libraries + /usr/lib/rpm/mageia/fix-dlsearch-path-in-libtool-for-multilib . lib64 Forcing run-time library search path definition in configure to prevent libtool from adding rpath for standard directories (configure was generated with libtool without support for autodetection) + ./configure --host=aarch64-mageia-linux-gnu --build=aarch64-mageia-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-tcltk --with-tcl-config=/usr/lib64/tclConfig.sh --with-tk-config=/usr/lib64/tkConfig.sh --with-cairo --with-libpng --with-jpeglib --with-system-zlib --with-system-bzlib --with-system-pcre --with-system-tre --with-system-xz --with-ICU --with-readline --disable-BLAS-shlib --with-lapack=/usr/lib64 --with-blas --enable-threads=pth --enable-R-profiling --enable-R-shlib --disable-lto configure: WARNING: unrecognized options: --disable-dependency-tracking, --with-system-zlib, --with-system-bzlib, --with-system-pcre, --with-system-xz checking build system type... aarch64-mageia-linux-gnu checking host system type... aarch64-mageia-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /usr/bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... /usr/bin/gtar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... /usr/sbin/install-info checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... found zi4.sty checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 using default browser ... /usr/bin/xdg-open checking for /usr/bin/xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... false checking for realpath... /usr/bin/realpath checking for aarch64-mageia-linux-gnu-pkg-config... /usr/bin/aarch64-mageia-linux-gnu-pkg-config checking for aarch64-mageia-linux-gnu-gcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking whether gcc needs -traditional... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking for aarch64-mageia-linux-gnu-gfortran... no checking for aarch64-mageia-linux-gnu-g95... no checking for aarch64-mageia-linux-gnu-xlf95... no checking for aarch64-mageia-linux-gnu-f95... no checking for aarch64-mageia-linux-gnu-fort... no checking for aarch64-mageia-linux-gnu-ifort... no checking for aarch64-mageia-linux-gnu-ifc... no checking for aarch64-mageia-linux-gnu-efc... no checking for aarch64-mageia-linux-gnu-pgfortran... no checking for aarch64-mageia-linux-gnu-pgf95... no checking for aarch64-mageia-linux-gnu-lf95... no checking for aarch64-mageia-linux-gnu-ftn... no checking for aarch64-mageia-linux-gnu-nagfor... no checking for aarch64-mageia-linux-gnu-xlf90... no checking for aarch64-mageia-linux-gnu-f90... no checking for aarch64-mageia-linux-gnu-pgf90... no checking for aarch64-mageia-linux-gnu-pghpf... no checking for aarch64-mageia-linux-gnu-epcf90... no checking for aarch64-mageia-linux-gnu-g77... no checking for aarch64-mageia-linux-gnu-xlf... no checking for aarch64-mageia-linux-gnu-f77... no checking for aarch64-mageia-linux-gnu-frt... no checking for aarch64-mageia-linux-gnu-pgf77... no checking for aarch64-mageia-linux-gnu-cf77... no checking for aarch64-mageia-linux-gnu-fort77... no checking for aarch64-mageia-linux-gnu-fl32... no checking for aarch64-mageia-linux-gnu-af77... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for aarch64-mageia-linux-gnu-g++... no checking for aarch64-mageia-linux-gnu-c++... no checking for aarch64-mageia-linux-gnu-gpp... no checking for aarch64-mageia-linux-gnu-aCC... no checking for aarch64-mageia-linux-gnu-CC... no checking for aarch64-mageia-linux-gnu-cxx... no checking for aarch64-mageia-linux-gnu-cc++... no checking for aarch64-mageia-linux-gnu-cl.exe... no checking for aarch64-mageia-linux-gnu-FCC... no checking for aarch64-mageia-linux-gnu-KCC... no checking for aarch64-mageia-linux-gnu-RCC... no checking for aarch64-mageia-linux-gnu-xlC_r... no checking for aarch64-mageia-linux-gnu-xlC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking whether g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables can compile C++ code... yes checking how to run the C++ preprocessor... g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for aarch64-mageia-linux-gnu-gcc... no checking for aarch64-mageia-linux-gnu-objcc... no checking for aarch64-mageia-linux-gnu-objc... no checking for aarch64-mageia-linux-gnu-cc... no checking for aarch64-mageia-linux-gnu-CC... no checking for gcc... gcc checking whether we are using the GNU Objective C compiler... yes checking whether gcc accepts -g... yes checking whether g++ can compile ObjC++... yes checking for Objective C++ compiler... g++ checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-mageia-linux-gnu file names to aarch64-mageia-linux-gnu format... func_convert_file_noop checking how to convert aarch64-mageia-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for aarch64-mageia-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for aarch64-mageia-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for aarch64-mageia-linux-gnu-ar... (cached) ar checking for archiver @FILE support... @ checking for aarch64-mageia-linux-gnu-strip... no checking for strip... strip checking for aarch64-mageia-linux-gnu-ranlib... no checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for aarch64-mageia-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking stdalign.h usability... yes checking stdalign.h presence... yes checking for stdalign.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/aarch64-mageia-linux/11 -L/usr/lib/gcc/aarch64-mageia-linux/11/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-mageia-linux/11/../../.. -lgfortran -lm checking how to get verbose linking output from gcc... -v checking for C libraries of gcc... -L/usr/lib/gcc/aarch64-mageia-linux/11 -L/usr/lib/gcc/aarch64-mageia-linux/11/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/aarch64-mageia-linux/11/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... yes, using $(OBJC) -MM checking for ObjC runtime library... -lobjc checking for ObjC runtime style... unknown checking whether gcc accepts -fobjc-exceptions... yes checking if need -fno-optimize-sibling-calls for gfortran... yes checking for type of 'hidden' Fortran character lengths... size_t checking for xmkmf... /usr/bin/xmkmf checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking whether g++ supports C++17 features with -std=gnu++17... yes checking whether g++ supports C++20 features with -std=gnu++20... yes checking for g++ -std=gnu++11 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking sunmath.h usability... no checking sunmath.h presence... no checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... no checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking thread.h usability... no checking thread.h presence... no checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... no checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... yes checking whether mktime works correctly outside 1902-2037... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes configure: searching for an external BLAS configure: searching for BLAS in default libraries checking for dgemm_... no configure: searching for OpenBLAS checking for sgemm_ in -lopenblas... no configure: searching for ATLAS checking for ATL_xerbla in -latlas... no configure: searching for PhiPACK checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no configure: searching for IBM ESSL checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -lessl... no configure: searching for generic BLAS library checking for dgemm_ in -lblas... (cached) yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... no checking for dpstrf_ in /usr/lib64... no checking for dpstrf_ in -llapack... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether iswblank exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... libraries , headers checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Intrinsic.h usability... yes checking X11/Intrinsic.h presence... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking X11/Xmu/Atoms.h usability... yes checking X11/Xmu/Atoms.h presence... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for /usr/lib64/tclConfig.sh... /usr/lib64/tclConfig.sh checking for /usr/lib64/tkConfig.sh... /usr/lib64/tkConfig.sh checking tcl.h usability... yes checking tcl.h presence... yes checking for tcl.h... yes checking tk.h usability... yes checking tk.h presence... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking rpc/types.h usability... no checking rpc/types.h presence... no checking for rpc/types.h... no checking tirpc/rpc/types.h usability... no checking tirpc/rpc/types.h presence... no checking for tirpc/rpc/types.h... no checking for XDR support... no checking for inflateInit2_ in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking for BZ2_bzlibVersion in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking lzma.h usability... yes checking lzma.h presence... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking pcre2.h usability... yes checking pcre2.h presence... yes checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for tre_regncompb in -ltre... no checking for curl-config... /usr/bin/curl-config checking libcurl version ... 7.77.0 checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.28.0... yes checking if libcurl supports https... yes checking if pkg-config knows about libjpeg... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if pkg-config knows about libpng... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking if pkg-config knows about libtiff... yes checking tiffio.h usability... yes checking tiffio.h presence... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for sys/time.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for aarch64-mageia-linux-gnu-ranlib... ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... no checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_kill in -lpthread... yes checking for pthread_rwlock_t... yes checking for multithread API to use... posix checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... bison checking version of bison... 3.7.6, ok checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --disable-dependency-tracking, --with-system-zlib, --with-system-bzlib, --with-system-pcre, --with-system-xz R is now configured for aarch64-mageia-linux-gnu Source directory: . Installation directory: /usr C compiler: gcc -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables Fortran fixed-form compiler: gfortran -fno-optimize-sibling-calls -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables Default C++ compiler: g++ -std=gnu++11 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables C++14 compiler: g++ -std=gnu++14 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables C++17 compiler: g++ -std=gnu++17 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables C++20 compiler: g++ -std=gnu++20 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables Fortran free-form compiler: gfortran -fno-optimize-sibling-calls -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables Obj-C compiler: gcc -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fobjc-exceptions Interfaces supported: X11, tcltk External libraries: pcre2, readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling Capabilities skipped: Options not enabled: shared BLAS, memory profiling Recommended packages: yes + /usr/bin/make -O -j8 V=1 VERBOSE=1 make[1]: Nothing to be done for 'R'. make[1]: Nothing to be done for 'R'. make[2]: Nothing to be done for 'R'. make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/scripts' creating src/scripts/R.fe make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/scripts' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/scripts' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/include' mkdir -p -- ../../include make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/include' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/include/R_ext' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' making xdr.d from xdr.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' making xdr_mem.d from xdr_mem.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' making xdr_float.d from xdr_float.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making regerror.d from regerror.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' making xdr_stdio.d from xdr_stdio.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making regcomp.d from regcomp.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making tre-ast.d from tre-ast.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making regexec.d from regexec.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making tre-match-backtrack.d from tre-match-backtrack.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making tre-match-parallel.d from tre-match-parallel.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making tre-mem.d from tre-mem.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making tre-compile.d from tre-compile.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making tre-match-approx.d from tre-match-approx.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making tre-stack.d from tre-stack.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making tre-parse.d from tre-parse.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' making xmalloc.d from xmalloc.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c xdr_float.c -o xdr_float.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c xdr_stdio.c -o xdr_stdio.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c xdr_mem.c -o xdr_mem.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c regerror.c -o regerror.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c xdr.c -o xdr.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-ast.c -o tre-ast.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' ar -cr libxdr.a xdr.o xdr_float.o xdr_mem.o xdr_stdio.o ranlib libxdr.a make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/xdr' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c regcomp.c -o regcomp.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-mem.c -o tre-mem.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c regexec.c -o regexec.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-stack.c -o tre-stack.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c xmalloc.c -o xmalloc.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-parse.c -o tre-parse.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c tre-compile.c -o tre-compile.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/extra/tre' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' making interv.d from interv.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' making pretty.d from pretty.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' making maxcol.d from maxcol.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' making integrate.d from integrate.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' making uncmin.d from uncmin.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' making optim.d from optim.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpbfa.f -o dpbfa.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c interv.c -o interv.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpbsl.f -o dpbsl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c maxcol.c -o maxcol.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pretty.c -o pretty.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpofa.f -o dpofa.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dchdc.f -o dchdc.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpodi.f -o dpodi.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dposl.f -o dposl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpoco.f -o dpoco.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrls.f -o dqrls.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrdc.f -o dqrdc.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrdc2.f -o dqrdc2.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrutl.f -o dqrutl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dqrsl.f -o dqrsl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtrsl.f -o dtrsl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtrco.f -o dtrco.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dsvdc.f -o dsvdc.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c integrate.c -o integrate.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c uncmin.c -o uncmin.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c optim.c -o optim.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/appl' #@/usr/bin/make install-Linpack make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making d1mach.d from d1mach.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making mlutils.d from mlutils.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making i1mach.d from i1mach.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making fmax2.d from fmax2.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making fmin2.d from fmin2.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making fround.d from fround.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making fprec.d from fprec.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making ftrunc.d from ftrunc.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making fsign.d from fsign.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making sign.d from sign.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making imax2.d from imax2.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making imin2.d from imin2.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making log1p.d from log1p.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making chebyshev.d from chebyshev.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making lgammacor.d from lgammacor.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making gammalims.d from gammalims.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making stirlerr.d from stirlerr.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making bd0.d from bd0.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making gamma.d from gamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making lbeta.d from lbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making gamma_cody.d from gamma_cody.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making polygamma.d from polygamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making beta.d from beta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making lgamma.d from lgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making bessel_i.d from bessel_i.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making cospi.d from cospi.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making bessel_y.d from bessel_y.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making bessel_k.d from bessel_k.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making bessel_j.d from bessel_j.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making snorm.d from snorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making choose.d from choose.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making sexp.d from sexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dgamma.d from dgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pgamma.d from pgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qbeta.d from qbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rgamma.d from rgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dbeta.d from dbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pbeta.d from pbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qgamma.d from qgamma.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rbeta.d from rbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dunif.d from dunif.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dnorm.d from dnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making punif.d from punif.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qunif.d from qunif.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making runif.d from runif.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pnorm.d from pnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qnorm.d from qnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rnorm.d from rnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dlnorm.d from dlnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rlnorm.d from rlnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making df.d from df.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making plnorm.d from plnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qlnorm.d from qlnorm.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qf.d from qf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pf.d from pf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rf.d from rf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dnf.d from dnf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pt.d from pt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dt.d from dt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qt.d from qt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rt.d from rt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dnt.d from dnt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dchisq.d from dchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pchisq.d from pchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qchisq.d from qchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dbinom.d from dbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rnchisq.d from rnchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rchisq.d from rchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pbinom.d from pbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qbinom.d from qbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rmultinom.d from rmultinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rbinom.d from rbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dcauchy.d from dcauchy.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pcauchy.d from pcauchy.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qcauchy.d from qcauchy.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rcauchy.d from rcauchy.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dexp.d from dexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pexp.d from pexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qexp.d from qexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rexp.d from rexp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dgeom.d from dgeom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rgeom.d from rgeom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pgeom.d from pgeom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qgeom.d from qgeom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dhyper.d from dhyper.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making phyper.d from phyper.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qhyper.d from qhyper.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rhyper.d from rhyper.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pnbinom.d from pnbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qnbinom.d from qnbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dnbinom.d from dnbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rnbinom.d from rnbinom.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dpois.d from dpois.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making ppois.d from ppois.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qpois.d from qpois.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rpois.d from rpois.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pweibull.d from pweibull.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dweibull.d from dweibull.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dlogis.d from dlogis.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qweibull.d from qweibull.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rweibull.d from rweibull.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making plogis.d from plogis.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making rlogis.d from rlogis.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qlogis.d from qlogis.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qnchisq.d from qnchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qnbeta.d from qnbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dnchisq.d from dnchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pnbeta.d from pnbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pnchisq.d from pnchisq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making dnbeta.d from dnbeta.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pnf.d from pnf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making pnt.d from pnt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making ptukey.d from ptukey.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qnf.d from qnf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qnt.d from qnt.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making qtukey.d from qtukey.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making wilcox.d from wilcox.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making toms708.d from toms708.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' making signrank.d from signrank.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mlutils.c -o mlutils.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ftrunc.c -o ftrunc.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmin2.c -o fmin2.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c i1mach.c -o i1mach.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmax2.c -o fmax2.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c d1mach.c -o d1mach.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fround.c -o fround.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fprec.c -o fprec.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sign.c -o sign.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fsign.c -o fsign.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imin2.c -o imin2.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imax2.c -o imax2.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c log1p.c -o log1p.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chebyshev.c -o chebyshev.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gammalims.c -o gammalims.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgammacor.c -o lgammacor.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bd0.c -o bd0.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stirlerr.c -o stirlerr.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma_cody.c -o gamma_cody.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c beta.c -o beta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgamma.c -o lgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma.c -o gamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lbeta.c -o lbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cospi.c -o cospi.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c choose.c -o choose.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sexp.c -o sexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c snorm.c -o snorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c polygamma.c -o polygamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_y.c -o bessel_y.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgamma.c -o dgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_i.c -o bessel_i.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_j.c -o bessel_j.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbeta.c -o dbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbeta.c -o pbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgamma.c -o rgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dunif.c -o dunif.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c punif.c -o punif.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgamma.c -o qgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbeta.c -o rbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qunif.c -o qunif.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c runif.c -o runif.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgamma.c -o pgamma.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnorm.c -o rnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnorm.c -o dnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlnorm.c -o dlnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plnorm.c -o plnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlnorm.c -o qlnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnorm.c -o qnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlnorm.c -o rlnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnorm.c -o pnorm.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c df.c -o df.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qf.c -o qf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rf.c -o rf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pf.c -o pf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbeta.c -o qbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnf.c -o dnf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dt.c -o dt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rt.c -o rt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dchisq.c -o dchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pt.c -o pt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnt.c -o dnt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pchisq.c -o pchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qchisq.c -o qchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rchisq.c -o rchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnchisq.c -o rnchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbinom.c -o pbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qt.c -o qt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbinom.c -o dbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dcauchy.c -o dcauchy.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pcauchy.c -o pcauchy.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rmultinom.c -o rmultinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbinom.c -o qbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qcauchy.c -o qcauchy.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rcauchy.c -o rcauchy.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pexp.c -o pexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dexp.c -o dexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbinom.c -o rbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qexp.c -o qexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rexp.c -o rexp.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgeom.c -o dgeom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgeom.c -o pgeom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgeom.c -o rgeom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgeom.c -o qgeom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dhyper.c -o dhyper.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qhyper.c -o qhyper.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c phyper.c -o phyper.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbinom.c -o pnbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnbinom.c -o rnbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpois.c -o dpois.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbinom.c -o dnbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbinom.c -o qnbinom.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ppois.c -o ppois.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rhyper.c -o rhyper.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pweibull.c -o pweibull.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dweibull.c -o dweibull.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qpois.c -o qpois.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qweibull.c -o qweibull.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rweibull.c -o rweibull.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpois.c -o rpois.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlogis.c -o dlogis.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plogis.c -o plogis.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlogis.c -o rlogis.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlogis.c -o qlogis.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnchisq.c -o dnchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbeta.c -o dnbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnf.c -o pnf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbeta.c -o qnbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnchisq.c -o qnchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbeta.c -o pnbeta.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnf.c -o qnf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnt.c -o pnt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnchisq.c -o pnchisq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnt.c -o qnt.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qtukey.c -o qtukey.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ptukey.c -o ptukey.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c signrank.c -o signrank.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c wilcox.c -o wilcox.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c toms708.c -o toms708.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' config.status: creating src/unix/Makefile make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' making Rembedded.d from Rembedded.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' making dynload.d from dynload.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' making X11.d from X11.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' making system.d from system.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' making sys-unix.d from sys-unix.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' making sys-std.d from sys-std.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rembedded.c -o Rembedded.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dynload.c -o dynload.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c X11.c -o X11.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c system.c -o system.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sys-unix.c -o sys-unix.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sys-std.c -o sys-std.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' gcc -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -DR_HOME='"/home/iurt/rpmbuild/BUILD/R-4.0.5"' \ -o Rscript ./Rscript.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' config.status: creating src/main/Makefile make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making CommandLineArgs.d from CommandLineArgs.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making Renviron.d from Renviron.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making agrep.d from agrep.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making altrep.d from altrep.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making apply.d from apply.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making RNG.d from RNG.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making Rdynload.d from Rdynload.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making altclasses.d from altclasses.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making attrib.d from attrib.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making arithmetic.d from arithmetic.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making bind.d from bind.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making colors.d from colors.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making array.d from array.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making builtin.d from builtin.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making character.d from character.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making coerce.d from coerce.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making complex.d from complex.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making cum.d from cum.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making context.d from context.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making datetime.d from datetime.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making debug.d from debug.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making dcf.d from dcf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making connections.d from connections.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making deparse.d from deparse.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making devices.d from devices.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making duplicate.d from duplicate.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making dotcode.d from dotcode.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making dstruct.d from dstruct.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making dounzip.d from dounzip.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making edit.d from edit.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making engine.d from engine.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making envir.d from envir.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making errors.d from errors.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making format.d from format.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making gevents.d from gevents.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making gram-ex.d from gram-ex.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making gram.d from gram.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making graphics.d from graphics.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making eval.d from eval.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making grep.d from grep.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making identical.d from identical.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making inlined.d from inlined.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making inspect.d from inspect.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making internet.d from internet.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making iosupport.d from iosupport.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making lapack.d from lapack.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making localecharset.d from localecharset.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making list.d from list.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making logic.d from logic.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making mapply.d from mapply.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making match.d from match.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making main.d from main.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making options.d from options.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making memory.d from memory.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making objects.d from objects.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making names.d from names.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making paste.d from paste.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making plot3d.d from plot3d.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making plot.d from plot.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making plotmath.d from plotmath.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making printvector.d from printvector.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making platform.d from platform.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making printarray.d from printarray.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making print.d from print.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making printutils.d from printutils.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making radixsort.d from radixsort.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making qsort.d from qsort.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making random.d from random.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making rlocale.d from rlocale.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making registration.d from registration.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making raw.d from raw.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making relop.d from relop.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making saveload.d from saveload.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making seq.d from seq.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making scan.d from scan.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making sort.d from sort.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making serialize.d from serialize.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making source.d from source.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making split.d from split.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making sprintf.d from sprintf.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making startup.d from startup.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making subassign.d from subassign.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making subscript.d from subscript.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making subset.d from subset.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making summary.d from summary.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making times.d from times.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making sysutils.d from sysutils.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making unique.d from unique.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making version.d from version.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making g_alab_her.d from g_alab_her.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making Rmain.d from Rmain.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making alloca.d from alloca.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making g_fontdb.d from g_fontdb.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making g_cntrlify.d from g_cntrlify.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making g_her_glyph.d from g_her_glyph.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making util.d from util.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making strncasecmp.d from strncasecmp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making strdup.d from strdup.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' making mkdtemp.d from mkdtemp.c make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c CommandLineArgs.c -o CommandLineArgs.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Renviron.c -o Renviron.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c RNG.c -o RNG.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c altrep.c -o altrep.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c apply.c -o apply.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rdynload.c -o Rdynload.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c altclasses.c -o altclasses.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agrep.c -o agrep.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c colors.c -o colors.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c builtin.c -o builtin.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c character.c -o character.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c complex.c -o complex.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c attrib.c -o attrib.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cum.c -o cum.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c context.c -o context.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c array.c -o array.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dcf.c -o dcf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c debug.c -o debug.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devices.c -o devices.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bind.c -o bind.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dstruct.c -o dstruct.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c arithmetic.c -o arithmetic.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coerce.c -o coerce.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c edit.c -o edit.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dounzip.c -o dounzip.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c duplicate.c -o duplicate.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c deparse.c -o deparse.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c datetime.c -o datetime.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c format.c -o format.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gevents.c -o gevents.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gram-ex.c -o gram-ex.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c graphics.c -o graphics.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dotcode.c -o dotcode.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c engine.c -o engine.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c identical.c -o identical.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c errors.c -o errors.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c inlined.c -o inlined.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c connections.c -o connections.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c inspect.c -o inspect.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c iosupport.c -o iosupport.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lapack.c -o lapack.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c internet.c -o internet.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c localecharset.c -o localecharset.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c list.c -o list.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mapply.c -o mapply.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c match.c -o match.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c main.c -o main.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c names.c -o names.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c envir.c -o envir.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c logic.c -o logic.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c options.c -o options.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c paste.c -o paste.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c objects.c -o objects.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plot.c -o plot.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gram.c -o gram.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plot3d.c -o plot3d.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c grep.c -o grep.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c printvector.c -o printvector.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c platform.c -o platform.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c print.c -o print.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c printarray.c -o printarray.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c printutils.c -o printutils.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c registration.c -o registration.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qsort.c -o qsort.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlocale.c -o rlocale.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c raw.c -o raw.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c random.c -o random.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plotmath.c -o plotmath.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c memory.c -o memory.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c radixsort.c -o radixsort.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c source.c -o source.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c scan.c -o scan.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c saveload.c -o saveload.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c split.c -o split.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c startup.c -o startup.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c relop.c -o relop.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sprintf.c -o sprintf.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c serialize.c -o serialize.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sort.c -o sort.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c times.c -o times.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c seq.c -o seq.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c subscript.c -o subscript.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c version.c -o version.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c g_alab_her.c -o g_alab_her.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sysutils.c -o sysutils.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c summary.c -o summary.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c g_fontdb.c -o g_fontdb.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c xxxpr.f -o xxxpr.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c subset.c -o subset.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c g_her_glyph.c -o g_her_glyph.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c g_cntrlify.c -o g_cntrlify.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c subassign.c -o subassign.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c util.c -o util.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c unique.c -o unique.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c eval.c -o eval.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -shared -fopenmp -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a ../extra/xdr/libxdr.a -lblas -lgfortran -lm -lreadline -lpcre2-8 -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' mkdir -p -- /home/iurt/rpmbuild/BUILD/R-4.0.5/bin/exec make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' mkdir -p -- /home/iurt/rpmbuild/BUILD/R-4.0.5/lib make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rmain.c -o Rmain.o make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o R.bin Rmain.o -lR make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' making nanoftp.d from nanoftp.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' making Rsock.d from Rsock.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' making rotated.d from rotated.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/lapack' making Lapack.d from Lapack.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/lapack' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' making internet.d from internet.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' making libcurl.d from libcurl.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' making Rhttpd.d from Rhttpd.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' making nanohttp.d from nanohttp.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' making sock.d from sock.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' making rbitmap.d from rbitmap.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' making sockconn.d from sockconn.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' making devX11.d from devX11.c make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c Rsock.c -o Rsock.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c sock.c -o sock.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c nanoftp.c -o nanoftp.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c internet.c -o internet.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c nanohttp.c -o nanohttp.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c sockconn.c -o sockconn.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c libcurl.c -o libcurl.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbitmap.c -o rbitmap.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lR make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' mkdir -p -- /home/iurt/rpmbuild/BUILD/R-4.0.5/modules make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rotated.c -o rotated.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/lapack' gcc -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Lapack.c -o Lapack.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/lapack' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/lapack' gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o lapack.so Lapack.o -lR -llapack -lblas -lgfortran -lm make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/lapack' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devX11.c -o devX11.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../src/library/grDevices/src/cairo -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dataentry.c -o dataentry.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' mkdir -p -- ../../library make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/profile' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/translations' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/base' building package 'base' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/base' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/base' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making md5.d from md5.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making text.d from text.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making http.d from http.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making getfmts.d from getfmts.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making Rmd5.d from Rmd5.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making install.d from install.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making signals.d from signals.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making gramLatex.d from gramLatex.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' making gramRd.d from gramRd.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c http.c -o http.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rmd5.c -o Rmd5.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c signals.c -o signals.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c getfmts.c -o getfmts.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c install.c -o install.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c text.c -o text.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c md5.c -o md5.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gramLatex.c -o gramLatex.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gramRd.c -o gramRd.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/compiler' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/compiler' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/compiler' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/base' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tools' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' mkdir -p -- ../../../library/utils/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' making sock.d from sock.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' making size.d from size.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' making stubs.d from stubs.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' making utils.d from utils.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' making io.d from io.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sock.c -o sock.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c utils.c -o utils.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stubs.c -o stubs.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c size.c -o size.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c io.c -o io.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/utils' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices' mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making chull.d from chull.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making axis_scales.d from axis_scales.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making devices.d from devices.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making stubs.d from stubs.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making devPicTeX.d from devPicTeX.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making colors.d from colors.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making devCairo.d from devCairo.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making devQuartz.d from devQuartz.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' making devPS.d from devPS.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c axis_scales.c -o axis_scales.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devCairo.c -o devCairo.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stubs.c -o stubs.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devQuartz.c -o devQuartz.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chull.c -o chull.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devices.c -o devices.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devPicTeX.c -o devPicTeX.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c colors.c -o colors.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c devPS.c -o devPS.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src' make[7]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src/cairo' making cairoBM.d from cairoBM.c make[7]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src/cairo' make[9]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src/cairo' gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/harfbuzz -I/usr/include/freetype2 -I/usr/include/libpng16 -I/usr/include/libmount -I/usr/include/blkid -I/usr/include/fribidi -I/usr/include/libxml2 -I/usr/include/cairo -I/usr/include/pixman-1 -pthread -I../../../../../src/modules/X11 -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cairoBM.c -o cairoBM.o make[9]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src/cairo' make[9]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src/cairo' gcc -shared -L"../../../../../lib" -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm make[9]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices/src/cairo' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grDevices' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics' mkdir -p -- ../../../library/graphics/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' making stem.d from stem.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' making base.d from base.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' making par.d from par.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' making graphics.d from graphics.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' making plot.d from plot.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' making plot3d.d from plot3d.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stem.c -o stem.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c base.c -o base.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c graphics.c -o graphics.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c par.c -o par.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plot3d.c -o plot3d.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plot.c -o plot.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/graphics' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats' mkdir -p -- ../../../library/stats/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making kmeans.d from kmeans.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making bandwidths.d from bandwidths.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making d2x2xk.d from d2x2xk.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making ansari.d from ansari.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making chisqsim.d from chisqsim.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making kendall.d from kendall.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making fexact.d from fexact.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making prho.d from prho.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making line.d from line.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making swilk.d from swilk.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making ks.d from ks.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making smooth.d from smooth.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making ksmooth.d from ksmooth.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making monoSpl.d from monoSpl.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making loessc.d from loessc.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making dblcen.d from dblcen.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making Srunmed.d from Srunmed.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making hclust-utils.d from hclust-utils.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making isoreg.d from isoreg.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making distance.d from distance.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making nls.d from nls.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making HoltWinters.d from HoltWinters.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making rWishart.d from rWishart.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making PPsum.d from PPsum.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making arima.d from arima.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making burg.d from burg.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making filter.d from filter.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making mAR.d from mAR.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making port.d from port.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making pacf.d from pacf.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making starma.d from starma.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making family.d from family.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making sbart.d from sbart.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making approx.d from approx.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making loglin.d from loglin.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making lowess.d from lowess.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making massdist.d from massdist.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making lm.d from lm.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making splines.d from splines.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making complete_cases.d from complete_cases.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making fft.d from fft.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making cov.d from cov.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making fourier.d from fourier.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making deriv.d from deriv.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making model.d from model.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making optim.d from optim.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making optimize.d from optimize.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making integrate.d from integrate.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making zeroin.d from zeroin.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making rcont.d from rcont.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making distn.d from distn.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making influence.d from influence.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' making random.d from random.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c d2x2xk.c -o d2x2xk.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c kendall.c -o kendall.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ansari.c -o ansari.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chisqsim.c -o chisqsim.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bandwidths.c -o bandwidths.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c kmeans.c -o kmeans.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c line.c -o line.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c prho.c -o prho.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ksmooth.c -o ksmooth.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c swilk.c -o swilk.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ks.c -o ks.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c monoSpl.c -o monoSpl.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c isoreg.c -o isoreg.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dblcen.c -o dblcen.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c smooth.c -o smooth.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c hclust-utils.c -o hclust-utils.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c PPsum.c -o PPsum.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c HoltWinters.c -o HoltWinters.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c loessc.c -o loessc.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rWishart.c -o rWishart.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c distance.c -o distance.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nls.c -o nls.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c burg.c -o burg.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c filter.c -o filter.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c family.c -o family.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Srunmed.c -o Srunmed.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c port.c -o port.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c approx.c -o approx.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sbart.c -o sbart.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pacf.c -o pacf.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c massdist.c -o massdist.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c starma.c -o starma.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c loglin.c -o loglin.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lm.c -o lm.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lowess.c -o lowess.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c splines.c -o splines.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c complete_cases.c -o complete_cases.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c arima.c -o arima.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fourier.c -o fourier.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fft.c -o fft.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mAR.c -o mAR.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fexact.c -o fexact.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c integrate.c -o integrate.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c zeroin.c -o zeroin.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rcont.c -o rcont.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c influence.c -o influence.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bsplvd.f -o bsplvd.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bvalue.f -o bvalue.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bvalus.f -o bvalus.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c random.c -o random.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c optimize.c -o optimize.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qsbart.f -o qsbart.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c optim.c -o optim.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sgram.f -o sgram.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sinerp.f -o sinerp.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stxwx.f -o stxwx.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sslvrg.f -o sslvrg.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c distn.c -o distn.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c eureka.f -o eureka.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c hclust.f -o hclust.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cov.c -o cov.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lminfl.f -o lminfl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c kmns.f -o kmns.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c deriv.c -o deriv.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stl.f -o stl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ppr.f -o ppr.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c loessf.f -o loessf.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fopenmp -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c model.c -o model.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gfortran -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c portsrc.f -o portsrc.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/datasets' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/datasets' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods' mkdir -p -- ../../../library/methods/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' making do_substitute_direct.d from do_substitute_direct.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' making slot.d from slot.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' making class_support.d from class_support.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' making methods_list_dispatch.d from methods_list_dispatch.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' making tests.d from tests.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' making utils.d from utils.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c slot.c -o slot.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c class_support.c -o class_support.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c do_substitute_direct.c -o do_substitute_direct.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tests.c -o tests.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c utils.c -o utils.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c methods_list_dispatch.c -o methods_list_dispatch.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods' byte-compiling package 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/methods' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid' mkdir -p -- ../../../library/grid/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making register.d from register.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making just.d from just.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making state.d from state.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making grid.d from grid.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making layout.d from layout.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making matrix.d from matrix.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making gpar.d from gpar.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making unit.d from unit.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making viewport.d from viewport.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' making util.d from util.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c just.c -o just.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c register.c -o register.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c matrix.c -o matrix.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c state.c -o state.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c util.c -o util.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c viewport.c -o viewport.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c layout.c -o layout.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gpar.c -o gpar.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c unit.c -o unit.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c grid.c -o grid.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/grid' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines' mkdir -p -- ../../../library/splines/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines/src' making splines.d from splines.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines/src' gcc -I"../../../../include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c splines.c -o splines.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o splines.so splines.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/splines' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats4' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats4' mkdir -p -- ../../../library/stats4/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats4' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/stats4' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' making init.d from init.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' making tcltk_unix.d from tcltk_unix.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' making tcltk.d from tcltk.c make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tcltk_unix.c -o tcltk_unix.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tcltk.c -o tcltk.o make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib64 -ltcl8.6 -L/usr/lib64 -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/tcltk' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel' mkdir -p -- ../../../library/parallel/R make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' making rngstream.d from rngstream.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' making init.d from init.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' making fork.d from fork.c make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rngstream.c -o rngstream.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fork.c -o fork.o make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' make[5]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' gcc -shared -L../../../../lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[5]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' make[6]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel/src' make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/parallel' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' installing parsed NAMESPACE files make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[1]: Nothing to be done for 'R'. you should 'make docs' now ... make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc' creating doc/NEWS make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5' configuring Java ... *** JAVA_HOME is not a valid path, ignoring Java interpreter : /usr/bin/java Java version : 11.0.11 Java home path : /usr/lib/jvm/java-11-openjdk-11.0.11.0.9-0.1.mga9.aarch64 Java compiler : /usr/bin/javac Java headers gen.: Java archive tool: /usr/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm make[2]: Entering directory '/tmp/Rjavareconf.2FfMa6' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/lib/jvm/java-11-openjdk-11.0.11.0.9-0.1.mga9.aarch64/include -I/usr/lib/jvm/java-11-openjdk-11.0.11.0.9-0.1.mga9.aarch64/include/linux -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c conftest.c -o conftest.o gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o conftest.so conftest.o -L/usr/lib/jvm/java-11-openjdk-11.0.11.0.9-0.1.mga9.aarch64/lib/server -ljvm -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[2]: Leaving directory '/tmp/Rjavareconf.2FfMa6' JAVA_HOME : /usr/lib/jvm/java-11-openjdk-11.0.11.0.9-0.1.mga9.aarch64 Java library path: $(JAVA_HOME)/lib/server JNI cpp flags : -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/linux JNI linker flags : -L$(JAVA_HOME)/lib/server -ljvm Updating Java configuration in /home/iurt/rpmbuild/BUILD/R-4.0.5 Done. make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc' creating doc/NEWS.pdf make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' creating doc/manual/version.texi make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' creating doc/manual/R-FAQ.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' creating doc/manual/R-data.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' creating doc/manual/R-lang.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' creating doc/manual/R-ints.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' creating doc/manual/R-admin.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' creating doc/manual/R-intro.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' creating doc/manual/R-exts.html make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' installing parsed Rd make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' datasets make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' grid make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' grDevices make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' methods make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' tcltk make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' graphics make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' splines make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' compiler make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' stats4 make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' tools make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' parallel make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' utils make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' stats make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' base make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' building/updating package metadata ... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' writing package indices make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package MASS make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package codetools make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package foreign make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package lattice make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package KernSmooth make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package rpart make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package nnet make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package spatial make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (codetools) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp5b3aoP/R.INSTALL320926a77bb9/spatial/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmp5b3aoP/R.INSTALL320926a77bb9/spatial/src' make[3]: Entering directory '/tmp/Rtmp5b3aoP/R.INSTALL320926a77bb9/spatial/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c krc.c -o krc.o make[3]: Leaving directory '/tmp/Rtmp5b3aoP/R.INSTALL320926a77bb9/spatial/src' make[3]: Entering directory '/tmp/Rtmp5b3aoP/R.INSTALL320926a77bb9/spatial/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pps.c -o pps.o make[3]: Leaving directory '/tmp/Rtmp5b3aoP/R.INSTALL320926a77bb9/spatial/src' make[3]: Entering directory '/tmp/Rtmp5b3aoP/R.INSTALL320926a77bb9/spatial/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o spatial.so init.o krc.o pps.o -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/Rtmp5b3aoP/R.INSTALL320926a77bb9/spatial/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpFIslfq/R.INSTALL320722a5e604/nnet/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nnet.c -o nnet.o make[3]: Leaving directory '/tmp/RtmpFIslfq/R.INSTALL320722a5e604/nnet/src' make[3]: Entering directory '/tmp/RtmpFIslfq/R.INSTALL320722a5e604/nnet/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o nnet.so nnet.o -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/RtmpFIslfq/R.INSTALL320722a5e604/nnet/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c blkest.f -o blkest.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cp.f -o cp.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgedi.f -o dgedi.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgefa.f -o dgefa.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgesl.f -o dgesl.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c linbin.f -o linbin.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c linbin2D.f -o linbin2D.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c locpoly.f -o locpoly.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlbin.f -o rlbin.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sdiag.f -o sdiag.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sstdiag.f -o sstdiag.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' make[3]: Entering directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lblas -lgfortran -lm -lgfortran -lm -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/RtmpBWc1Pe/R.INSTALL31f332bab2d9/KernSmooth/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c R_systat.c -o R_systat.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rdbfread.c -o Rdbfread.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Rdbfwrite.c -o Rdbfwrite.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c SASxport.c -o SASxport.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c avl.c -o avl.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbfopen.c -o dbfopen.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c file-handle.c -o file-handle.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c format.c -o format.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c minitab.c -o minitab.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pfm-read.c -o pfm-read.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c spss.c -o spss.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sfm-read.c -o sfm-read.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stataread.c -o stataread.o make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' make[3]: Entering directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/RtmpnWFwRf/R.INSTALL31fb6f611cec/foreign/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c anova.c -o anova.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c anovapred.c -o anovapred.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c branch.c -o branch.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bsplit.c -o bsplit.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c choose_surg.c -o choose_surg.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fix_cp.c -o fix_cp.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c free_tree.c -o free_tree.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gini.c -o gini.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c graycode.c -o graycode.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c insert_split.c -o insert_split.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c make_cp_list.c -o make_cp_list.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c make_cp_table.c -o make_cp_table.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mysort.c -o mysort.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nodesplit.c -o nodesplit.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c partition.c -o partition.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c poisson.c -o poisson.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pred_rpart.c -o pred_rpart.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c print_tree.c -o print_tree.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpart.c -o rpart.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpart_callback.c -o rpart_callback.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpartexp2.c -o rpartexp2.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpartexp.c -o rpartexp.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpcountup.c -o rpcountup.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rundown.c -o rundown.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rundown2.c -o rundown2.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpmatrix.c -o rpmatrix.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c surrogate.c -o surrogate.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c usersplit.c -o usersplit.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c xval.c -o xval.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c xpred.c -o xpred.o make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' make[3]: Entering directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/Rtmpd5v9ZB/R.INSTALL31fa67366a58/rpart/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp6WznoJ/R.INSTALL31f0472b8caf/MASS/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c MASS.c -o MASS.o make[3]: Leaving directory '/tmp/Rtmp6WznoJ/R.INSTALL31f0472b8caf/MASS/src' make[3]: Entering directory '/tmp/Rtmp6WznoJ/R.INSTALL31f0472b8caf/MASS/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lqs.c -o lqs.o make[3]: Leaving directory '/tmp/Rtmp6WznoJ/R.INSTALL31f0472b8caf/MASS/src' make[3]: Entering directory '/tmp/Rtmp6WznoJ/R.INSTALL31f0472b8caf/MASS/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o MASS.so MASS.o lqs.o -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/Rtmp6WznoJ/R.INSTALL31f0472b8caf/MASS/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package cluster make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package class make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpQZ1bya/R.INSTALL38e1363082b/class/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c class.c -o class.o make[3]: Leaving directory '/tmp/RtmpQZ1bya/R.INSTALL38e1363082b/class/src' make[3]: Entering directory '/tmp/RtmpQZ1bya/R.INSTALL38e1363082b/class/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o class.so class.o -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/RtmpQZ1bya/R.INSTALL38e1363082b/class/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpTkpceE/R.INSTALL31ff86674ef/lattice/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpTkpceE/R.INSTALL31ff86674ef/lattice/src' make[3]: Entering directory '/tmp/RtmpTkpceE/R.INSTALL31ff86674ef/lattice/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c threeDplot.c -o threeDplot.o make[3]: Leaving directory '/tmp/RtmpTkpceE/R.INSTALL31ff86674ef/lattice/src' make[3]: Entering directory '/tmp/RtmpTkpceE/R.INSTALL31ff86674ef/lattice/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o lattice.so init.o threeDplot.o -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/RtmpTkpceE/R.INSTALL31ff86674ef/lattice/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (lattice) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package nlme make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package Matrix make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dysta.f -o dysta.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c daisy.f -o daisy.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sildist.c -o sildist.o make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mona.c -o mona.o make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c spannel.c -o spannel.o make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fanny.c -o fanny.o make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c clara.c -o clara.o make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c twins.c -o twins.o make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pam.c -o pam.o make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' make[3]: Entering directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/RtmpEZkWxq/R.INSTALL38df2d7caedf/cluster/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (cluster) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chol.f -o chol.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gnls.c -o gnls.o make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nlOptimizer.c -o nlOptimizer.o make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pythag.c -o pythag.o make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pdMat.c -o pdMat.o make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c matrix.c -o matrix.o make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nlme.c -o nlme.o make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gfortran -fno-optimize-sibling-calls -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rs.f -o rs.o f951: Warning: command-line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c corStruct.c -o corStruct.o make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c nlmefit.c -o nlmefit.o make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' make[3]: Entering directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/Rtmpogm2jC/R.INSTALL3e143ed450b5/nlme/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nlme) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c CHMfactor.c -o CHMfactor.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Tsparse.c -o Tsparse.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c TMatrix_as.c -o TMatrix_as.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cs_utils.c -o cs_utils.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgTMatrix.c -o dgTMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dense.c -o dense.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chm_common.c -o chm_common.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgCMatrix.c -o dgCMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpoMatrix.c -o dpoMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Mutils.c -o Mutils.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dppMatrix.c -o dppMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dsCMatrix.c -o dsCMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dspMatrix.c -o dspMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtTMatrix.c -o dtTMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtCMatrix.c -o dtCMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dsyMatrix.c -o dsyMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgeMatrix.c -o dgeMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtpMatrix.c -o dtpMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ldense.c -o ldense.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c Csparse.c -o Csparse.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgCMatrix.c -o lgCMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' ( cd Lib ; /usr/bin/make clean ) ( cd Source ; /usr/bin/make clean ) make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c factorizations.c -o factorizations.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' ( cd Source ; /usr/bin/make clean ) make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dtrMatrix.c -o dtrMatrix.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c abIndex.c -o abIndex.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' ( cd Lib ; /usr/bin/make -f "/home/iurt/rpmbuild/BUILD/R-4.0.5/etc/Makeconf" -f Makefile ) make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sparseQR.c -o sparseQR.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_aat.c -o cholmod_aat.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_band.c -o cholmod_band.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cs.c -o cs.o make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_common.c -o cholmod_common.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_add.c -o cholmod_add.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_error.c -o cholmod_error.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_complex.c -o cholmod_complex.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_copy.c -o cholmod_copy.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_memory.c -o cholmod_memory.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_factor.c -o cholmod_factor.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_version.c -o cholmod_version.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_dense.c -o cholmod_dense.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_sparse.c -o cholmod_sparse.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_triplet.c -o cholmod_triplet.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Check/cholmod_read.c -o cholmod_read.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Check/cholmod_write.c -o cholmod_write.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Core/cholmod_transpose.c -o cholmod_transpose.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Check/cholmod_check.c -o cholmod_check.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ../Modify/cholmod_updown.c -o cholmod_updown.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/CHOLMOD/Lib' ( cd Source ; /usr/bin/make -f "/home/iurt/rpmbuild/BUILD/R-4.0.5/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/COLAMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c colamd.c -o colamd_l.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/COLAMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/COLAMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c colamd.c -o colamd.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/COLAMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/COLAMD/Source' ar -rucs ../../COLAMD.a colamd.o colamd_l.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/COLAMD/Source' ( cd Source ; /usr/bin/make -f "/home/iurt/rpmbuild/BUILD/R-4.0.5/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_1.c -o amd_i_1.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_1.c -o amd_l_1.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_order.c -o amd_l_order.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_control.c -o amd_i_control.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_order.c -o amd_i_order.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_control.c -o amd_l_control.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_info.c -o amd_i_info.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_info.c -o amd_l_info.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDINT -c amd_2.c -o amd_i_2.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I../Include -DDLONG -c amd_2.c -o amd_l_2.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[5]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o make[5]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/AMD/Source' make[4]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/SuiteSparse_config' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -DNTIMER -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c SuiteSparse_config.c -o SuiteSparse_config.o make[4]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/SuiteSparse_config' make[4]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/SuiteSparse_config' ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[4]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src/SuiteSparse_config' make[3]: Entering directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -llapack -lblas -lgfortran -lm -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/Rtmp8N7zsN/R.INSTALL3e18329bed49/Matrix/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package survival make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package mgcv make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agexact.c -o agexact.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agmart.c -o agmart.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agfit5.c -o agfit5.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agmart3.c -o agmart3.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agfit4.c -o agfit4.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agsurv4.c -o agsurv4.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agscore2.c -o agscore2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agsurv5.c -o agsurv5.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c agsurv3.c -o agsurv3.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chinv2.c -o chinv2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cdecomp.c -o cdecomp.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cholesky2.c -o cholesky2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chinv3.c -o chinv3.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cholesky3.c -o cholesky3.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cholesky5.c -o cholesky5.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chsolve2.c -o chsolve2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chsolve5.c -o chsolve5.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chsolve3.c -o chsolve3.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c collapse.c -o collapse.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c concordance1.c -o concordance1.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cox_Rcallback.c -o cox_Rcallback.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c concordance3.c -o concordance3.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxcount1.c -o coxcount1.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxdetail.c -o coxdetail.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxmart.c -o coxmart.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxsafe.c -o coxsafe.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxmart2.c -o coxmart2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxfit6.c -o coxfit6.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxph_wtest.c -o coxph_wtest.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxexact.c -o coxexact.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxscho.c -o coxscho.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxscore2.c -o coxscore2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dmatrix.c -o dmatrix.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c doloop.c -o doloop.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c multicheck.c -o multicheck.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxsurv1.c -o coxsurv1.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gchol.c -o gchol.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c finegray.c -o finegray.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c norisk.c -o norisk.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxsurv2.c -o coxsurv2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survConcordance.c -o survConcordance.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pystep.c -o pystep.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pyears2.c -o pyears2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pyears3b.c -o pyears3b.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survdiff2.c -o survdiff2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pyears1.c -o pyears1.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survfit4.c -o survfit4.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxfit5.c -o coxfit5.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survfitci.c -o survfitci.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survpenal.c -o survpenal.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survreg6.c -o survreg6.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survregc1.c -o survregc1.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survsplit.c -o survsplit.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tmerge.c -o tmerge.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survregc2.c -o survregc2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survreg7.c -o survreg7.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survfitresid.c -o survfitresid.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c zph1.c -o zph1.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c survfitkm.c -o survfitkm.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c zph2.c -o zph2.o make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' make[3]: Entering directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agsurv3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o dmatrix.o doloop.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o zph1.o zph2.o -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/Rtmp6BD4DV/R.INSTALLcbbc1d79c2fd/survival/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' begin installing recommended package boot make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (boot) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c init.c -o init.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c davies.c -o davies.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c coxph.c -o coxph.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c matrix.c -o matrix.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c misc.c -o misc.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mgcv.c -o mgcv.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c magic.c -o magic.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mvn.c -o mvn.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qp.c -o qp.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c soap.c -o soap.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sparse-smooth.c -o sparse-smooth.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c tprs.c -o tprs.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c discrete.c -o discrete.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mat.c -o mat.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gdi.c -o gdi.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -I"/home/iurt/rpmbuild/BUILD/R-4.0.5/include" -DNDEBUG -I/usr/local/include -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sparse.c -o sparse.o make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' make[3]: Entering directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' gcc -shared -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o mgcv.so coxph.o davies.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o sparse.o tprs.o -llapack -lblas -lgfortran -lm -fopenmp -L/home/iurt/rpmbuild/BUILD/R-4.0.5/lib -lR make[3]: Leaving directory '/tmp/RtmpGSVfXP/R.INSTALLcbbf28fab911/mgcv/src' installing to /home/iurt/rpmbuild/BUILD/R-4.0.5/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mgcv) make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library/Recommended' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' building/updating vignettes for package 'grid' ... building/updating vignettes for package 'parallel' ... building/updating vignettes for package 'utils' ... make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' + pushd src/nmath/standalone ~/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone ~/rpmbuild/BUILD/R-4.0.5 + /usr/bin/make -O -j8 V=1 VERBOSE=1 (cd ../../include; /usr/bin/make Rmath.h) make[1]: 'Rmath.h' is up to date. Copying source files make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making mlutils.d from mlutils.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making d1mach.d from d1mach.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making i1mach.d from i1mach.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making fmax2.d from fmax2.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making fmin2.d from fmin2.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making fprec.d from fprec.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making fround.d from fround.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making ftrunc.d from ftrunc.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making sign.d from sign.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making fsign.d from fsign.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making imax2.d from imax2.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making imin2.d from imin2.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making chebyshev.d from chebyshev.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making log1p.d from log1p.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making lgammacor.d from lgammacor.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making gammalims.d from gammalims.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making gamma.d from gamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making stirlerr.d from stirlerr.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making bd0.d from bd0.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making lgamma.d from lgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making beta.d from beta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making gamma_cody.d from gamma_cody.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making polygamma.d from polygamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making lbeta.d from lbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making cospi.d from cospi.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making bessel_j.d from bessel_j.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making bessel_i.d from bessel_i.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making bessel_y.d from bessel_y.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making bessel_k.d from bessel_k.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making choose.d from choose.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making snorm.d from snorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making sexp.d from sexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dgamma.d from dgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pgamma.d from pgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qgamma.d from qgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rgamma.d from rgamma.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dbeta.d from dbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pbeta.d from pbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qbeta.d from qbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rbeta.d from rbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dunif.d from dunif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qunif.d from qunif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making punif.d from punif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making runif.d from runif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pnorm.d from pnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dnorm.d from dnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qnorm.d from qnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rnorm.d from rnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dlnorm.d from dlnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making plnorm.d from plnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qlnorm.d from qlnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rlnorm.d from rlnorm.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making df.d from df.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pf.d from pf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qf.d from qf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rf.d from rf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dt.d from dt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dnf.d from dnf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qt.d from qt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rt.d from rt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pt.d from pt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dnt.d from dnt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dchisq.d from dchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pchisq.d from pchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qchisq.d from qchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rchisq.d from rchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rnchisq.d from rnchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dbinom.d from dbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pbinom.d from pbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qbinom.d from qbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rbinom.d from rbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rmultinom.d from rmultinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pcauchy.d from pcauchy.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dcauchy.d from dcauchy.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qcauchy.d from qcauchy.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rcauchy.d from rcauchy.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dexp.d from dexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pexp.d from pexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qexp.d from qexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rexp.d from rexp.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dgeom.d from dgeom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pgeom.d from pgeom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qgeom.d from qgeom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rgeom.d from rgeom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dhyper.d from dhyper.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making phyper.d from phyper.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qhyper.d from qhyper.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rhyper.d from rhyper.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dnbinom.d from dnbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qnbinom.d from qnbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pnbinom.d from pnbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rnbinom.d from rnbinom.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dpois.d from dpois.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qpois.d from qpois.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making ppois.d from ppois.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rpois.d from rpois.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dweibull.d from dweibull.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pweibull.d from pweibull.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qweibull.d from qweibull.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rweibull.d from rweibull.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dlogis.d from dlogis.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making plogis.d from plogis.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qlogis.d from qlogis.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making rlogis.d from rlogis.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dnchisq.d from dnchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pnchisq.d from pnchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qnchisq.d from qnchisq.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making dnbeta.d from dnbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pnbeta.d from pnbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qnbeta.d from qnbeta.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pnf.d from pnf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making pnt.d from pnt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qnf.d from qnf.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qnt.d from qnt.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making ptukey.d from ptukey.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making qtukey.d from qtukey.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making toms708.d from toms708.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making wilcox.d from wilcox.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making signrank.d from signrank.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' making std_unif.d from std_unif.c make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c i1mach.c -o i1mach.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mlutils.c -o mlutils.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmin2.c -o fmin2.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c d1mach.c -o d1mach.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmax2.c -o fmax2.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c i1mach.c -o i1mach.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c d1mach.c -o d1mach.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fprec.c -o fprec.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c mlutils.c -o mlutils.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ftrunc.c -o ftrunc.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fround.c -o fround.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmin2.c -o fmin2.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fprec.c -o fprec.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fmax2.c -o fmax2.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imax2.c -o imax2.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sign.c -o sign.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imin2.c -o imin2.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sign.c -o sign.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fsign.c -o fsign.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imin2.c -o imin2.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fsign.c -o fsign.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chebyshev.c -o chebyshev.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ftrunc.c -o ftrunc.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c fround.c -o fround.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c imax2.c -o imax2.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gammalims.c -o gammalims.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c chebyshev.c -o chebyshev.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c log1p.c -o log1p.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgammacor.c -o lgammacor.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c log1p.c -o log1p.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgammacor.c -o lgammacor.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stirlerr.c -o stirlerr.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bd0.c -o bd0.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c stirlerr.c -o stirlerr.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gammalims.c -o gammalims.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bd0.c -o bd0.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma_cody.c -o gamma_cody.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgamma.c -o lgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma.c -o gamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma.c -o gamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c beta.c -o beta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c gamma_cody.c -o gamma_cody.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lgamma.c -o lgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c beta.c -o beta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lbeta.c -o lbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cospi.c -o cospi.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c cospi.c -o cospi.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c lbeta.c -o lbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_j.c -o bessel_j.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_i.c -o bessel_i.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c polygamma.c -o polygamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_i.c -o bessel_i.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_y.c -o bessel_y.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c choose.c -o choose.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c polygamma.c -o polygamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sexp.c -o sexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_j.c -o bessel_j.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c snorm.c -o snorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgamma.c -o dgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c bessel_y.c -o bessel_y.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c sexp.c -o sexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbeta.c -o dbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgamma.c -o rgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbeta.c -o pbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c choose.c -o choose.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgamma.c -o dgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgamma.c -o pgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgamma.c -o qgamma.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dunif.c -o dunif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c snorm.c -o snorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbeta.c -o rbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qunif.c -o qunif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgamma.c -o rgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c punif.c -o punif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbeta.c -o pbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbeta.c -o dbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c runif.c -o runif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbeta.c -o qbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dunif.c -o dunif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgamma.c -o qgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbeta.c -o rbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnorm.c -o dnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgamma.c -o pgamma.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c punif.c -o punif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnorm.c -o qnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qunif.c -o qunif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnorm.c -o rnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnorm.c -o dnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c runif.c -o runif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnorm.c -o pnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnorm.c -o pnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlnorm.c -o qlnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlnorm.c -o dlnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plnorm.c -o plnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbeta.c -o qbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plnorm.c -o plnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlnorm.c -o dlnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnorm.c -o rnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlnorm.c -o rlnorm.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnorm.c -o qnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlnorm.c -o rlnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlnorm.c -o qlnorm.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pf.c -o pf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c df.c -o df.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qf.c -o qf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rf.c -o rf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qf.c -o qf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pf.c -o pf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rf.c -o rf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c df.c -o df.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnf.c -o dnf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dt.c -o dt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dt.c -o dt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnf.c -o dnf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pt.c -o pt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pt.c -o pt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rt.c -o rt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rt.c -o rt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qt.c -o qt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnt.c -o dnt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dchisq.c -o dchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qt.c -o qt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dchisq.c -o dchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qchisq.c -o qchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnt.c -o dnt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pchisq.c -o pchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qchisq.c -o qchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rchisq.c -o rchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pchisq.c -o pchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbinom.c -o pbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbinom.c -o dbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dbinom.c -o dbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rchisq.c -o rchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnchisq.c -o rnchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnchisq.c -o rnchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbinom.c -o qbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rmultinom.c -o rmultinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pbinom.c -o pbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qbinom.c -o qbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dcauchy.c -o dcauchy.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rcauchy.c -o rcauchy.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pcauchy.c -o pcauchy.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbinom.c -o rbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qcauchy.c -o qcauchy.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rbinom.c -o rbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rmultinom.c -o rmultinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pexp.c -o pexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dexp.c -o dexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dcauchy.c -o dcauchy.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qexp.c -o qexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgeom.c -o qgeom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qcauchy.c -o qcauchy.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgeom.c -o pgeom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rexp.c -o rexp.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pcauchy.c -o pcauchy.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rcauchy.c -o rcauchy.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgeom.c -o dgeom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgeom.c -o rgeom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dexp.c -o dexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pexp.c -o pexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c phyper.c -o phyper.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rexp.c -o rexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qexp.c -o qexp.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dhyper.c -o dhyper.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pgeom.c -o pgeom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qgeom.c -o qgeom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dgeom.c -o dgeom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qhyper.c -o qhyper.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbinom.c -o pnbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbinom.c -o dnbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rhyper.c -o rhyper.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rgeom.c -o rgeom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnbinom.c -o rnbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbinom.c -o qnbinom.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dhyper.c -o dhyper.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ppois.c -o ppois.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c phyper.c -o phyper.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpois.c -o dpois.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dweibull.c -o dweibull.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpois.c -o rpois.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qhyper.c -o qhyper.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pweibull.c -o pweibull.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbinom.c -o dnbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rweibull.c -o rweibull.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plogis.c -o plogis.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlogis.c -o dlogis.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qpois.c -o qpois.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlogis.c -o qlogis.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbinom.c -o pnbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbinom.c -o qnbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qweibull.c -o qweibull.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rhyper.c -o rhyper.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnchisq.c -o dnchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlogis.c -o rlogis.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dpois.c -o dpois.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ppois.c -o ppois.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnchisq.c -o qnchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rnbinom.c -o rnbinom.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbeta.c -o qnbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbeta.c -o dnbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnchisq.c -o pnchisq.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnf.c -o pnf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qpois.c -o qpois.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rpois.c -o rpois.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dweibull.c -o dweibull.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnt.c -o pnt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pweibull.c -o pweibull.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qweibull.c -o qweibull.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbeta.c -o pnbeta.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnf.c -o qnf.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rweibull.c -o rweibull.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qtukey.c -o qtukey.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnt.c -o qnt.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dlogis.c -o dlogis.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c std_unif.c -o std_unif.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qlogis.c -o qlogis.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c rlogis.c -o rlogis.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c plogis.c -o plogis.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ptukey.c -o ptukey.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c signrank.c -o signrank.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnbeta.c -o dnbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnchisq.c -o qnchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnchisq.c -o pnchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c wilcox.c -o wilcox.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c dnchisq.c -o dnchisq.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnbeta.c -o pnbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnf.c -o pnf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnbeta.c -o qnbeta.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnf.c -o qnf.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qtukey.c -o qtukey.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c std_unif.c -o std_unif.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c pnt.c -o pnt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c qnt.c -o qnt.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c ptukey.c -o ptukey.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c signrank.c -o signrank.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c wilcox.c -o wilcox.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c toms708.c -o toms708.o make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' ar -cr libRmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o std_unif.o ranlib libRmath.a make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -I. -I../../../src/include -I../../../src/include -I./.. -I/usr/local/include -DHAVE_CONFIG_H -DMATHLIB_STANDALONE -fopenmp -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -c toms708.c -o toms708.lo make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' gcc -shared -fopenmp -Wl,--as-needed -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -o libRmath.so mlutils.lo d1mach.lo i1mach.lo fmax2.lo fmin2.lo fprec.lo fround.lo ftrunc.lo sign.lo fsign.lo imax2.lo imin2.lo chebyshev.lo log1p.lo lgammacor.lo gammalims.lo stirlerr.lo bd0.lo gamma.lo lgamma.lo gamma_cody.lo beta.lo lbeta.lo polygamma.lo cospi.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_y.lo choose.lo snorm.lo sexp.lo dgamma.lo pgamma.lo qgamma.lo rgamma.lo dbeta.lo pbeta.lo qbeta.lo rbeta.lo dunif.lo punif.lo qunif.lo runif.lo dnorm.lo pnorm.lo qnorm.lo rnorm.lo dlnorm.lo plnorm.lo qlnorm.lo rlnorm.lo df.lo pf.lo qf.lo rf.lo dnf.lo dt.lo pt.lo qt.lo rt.lo dnt.lo dchisq.lo pchisq.lo qchisq.lo rchisq.lo rnchisq.lo dbinom.lo pbinom.lo qbinom.lo rbinom.lo rmultinom.lo dcauchy.lo pcauchy.lo qcauchy.lo rcauchy.lo dexp.lo pexp.lo qexp.lo rexp.lo dgeom.lo pgeom.lo qgeom.lo rgeom.lo dhyper.lo phyper.lo qhyper.lo rhyper.lo dnbinom.lo pnbinom.lo qnbinom.lo rnbinom.lo dpois.lo ppois.lo qpois.lo rpois.lo dweibull.lo pweibull.lo qweibull.lo rweibull.lo dlogis.lo plogis.lo qlogis.lo rlogis.lo dnchisq.lo pnchisq.lo qnchisq.lo dnbeta.lo pnbeta.lo qnbeta.lo pnf.lo pnt.lo qnf.lo qnt.lo ptukey.lo qtukey.lo toms708.lo wilcox.lo signrank.lo std_unif.lo -lm make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone' + popd ~/rpmbuild/BUILD/R-4.0.5 + /usr/bin/make -O -j8 V=1 VERBOSE=1 pdf make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' creating doc/manual/version.tex make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'datasets' ... 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Converting parsed Rd's to LaTeX ............... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'lattice' ... Converting parsed Rd's to LaTeX ...... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'codetools' ... Converting parsed Rd's to LaTeX make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'boot' ... Converting parsed Rd's to LaTeX ........ make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'survival' ... 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Converting parsed Rd's to LaTeX make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'rpart' ... Converting parsed Rd's to LaTeX .. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'cluster' ... Converting parsed Rd's to LaTeX ..... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'class' ... Converting parsed Rd's to LaTeX . make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'spatial' ... Converting parsed Rd's to LaTeX .. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'stats' ... Converting parsed Rd's to LaTeX ............................... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'nlme' ... Converting parsed Rd's to LaTeX ............................ make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-admin.texi @setfilename R-admin.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-admin.cp Writing index file R-admin.en Underfull \hbox (badness 10000) in paragraph at lines 151--156 []@textrm The tar-balls are avail-able from [][]@texttt https:// stat. ethz. ch/ R/ daily/ [][][]@textrm . Down-load [1] Chapter 2 [2] Cross reference values unknown; you must run TeX again. [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1483--1487 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make Chapter 4 [17] [18] [19] Chapter 5 [20] Chapter 6 [21] [22] [23] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2060--2060 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [24] [25] [26] [27] [28] [29] Chapter 7 [30] [31] [32] Chapter 8 [33] Chapter 9 [34] [35] Appendix A [36] [37] [38] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3223--3223 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [39] [40] [41] [42] [43] [44] [45] [46] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] [58] [59] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4968--4968 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (20.74757pt too wide) in paragraph at lines 4970--4970 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] Overfull \hbox (106.97789pt too wide) in paragraph at lines 5024--5024 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [60] Overfull \hbox (45.05586pt too wide) in paragraph at lines 5062--5062 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (17.16873pt too wide) in paragraph at lines 5111--5112 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [61] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5173--5173 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] [62] [63] [64] Overfull \hbox (16.31242pt too wide) in paragraph at lines 5392--5392 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/adoptopenjdk-11.jdk/Cont ents/Home[] [65] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5513--5513 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 10000) in paragraph at lines 5515--5521 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5515--5521 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 5515--5521 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co m-piler have Overfull \hbox (22.06111pt too wide) in paragraph at lines 5544--5544 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] [66] [67] Overfull \hbox (119.7888pt too wide) in paragraph at lines 5746--5746 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [68] [69] (Function and variable index) [70] No file R-admin.vrs. (Concept index) [71] No file R-admin.cps. (Environment variable index) [72] No file R-admin.ens. [73] ) (see the transcript file for additional information) Output written on R-admin.pdf (76 pages, 466862 bytes). Transcript written on R-admin.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-admin.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-admin.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-admin.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-admin.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-admin.aux) Writing index file R-admin.cp Writing index file R-admin.en Underfull \hbox (badness 10000) in paragraph at lines 151--156 []@textrm The tar-balls are avail-able from [][]@texttt https:// stat. ethz. ch/ R/ daily/ [][][]@textrm . Down-load [1] Chapter 2 [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] Chapter 3 [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1483--1487 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make Chapter 4 [17] [18] [19] Chapter 5 [20] Chapter 6 [21] [22] [23] Overfull \hbox (16.31242pt too wide) in paragraph at lines 2060--2060 []@texttt Sys.setenv(PATH=paste("C:\\rtools40\\usr\\bin", Sys.getenv("PATH"), sep=";"))[] [24] [25] [26] [27] [28] [29] Chapter 7 [30] [31] [32] Chapter 8 [33] Chapter 9 [34] [35] Appendix A [36] [37] [38] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3223--3223 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] [39] [40] [41] [42] [43] [44] [45] [46] [47] Appendix B [48] [49] [50] [51] [52] [53] Appendix C [54] [55] [56] [57] [58] [59] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4968--4968 []@texttt curl -OL https://mac.r-project.org/libs-4/pcre2-10.34-darwin.17-x86_ 64.tar.gz[] Overfull \hbox (20.74757pt too wide) in paragraph at lines 4970--4970 []@texttt curl -OL https://mac.r-project.org/libs-4/xz-5.2.4-darwin.17-x86_64. tar.gz[] Overfull \hbox (106.97789pt too wide) in paragraph at lines 5024--5024 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] [60] Overfull \hbox (45.05586pt too wide) in paragraph at lines 5062--5062 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig[] Overfull \hbox (17.16873pt too wide) in paragraph at lines 5111--5112 [][][]@smallrm See [][]@smalltt https:// developer. apple. com/ documentati on/ xcode/ notarizing_macos_software_before_distribution[][][]@smallrm .| [61] Overfull \hbox (56.55324pt too wide) in paragraph at lines 5173--5173 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] [62] [63] [64] Overfull \hbox (16.31242pt too wide) in paragraph at lines 5392--5392 []@texttt JAVA_HOME=/Library/Java/JavaVirtualMachines/adoptopenjdk-11.jdk/Cont ents/Home[] [65] Overfull \hbox (14.99889pt too wide) in paragraph at lines 5513--5513 []@texttt PKG_LIBS = /usr/local/clang/lib/libc++.a /usr/local/clang/lib/libc++ abi.a[] Underfull \hbox (badness 10000) in paragraph at lines 5515--5521 @textrm in @texttt src/Makevars[]@textrm . It would also be pos-si-ble to stat ic link the For- Underfull \hbox (badness 10000) in paragraph at lines 5515--5521 @textrm tran run-time li-braries @texttt /usr/local/gfortran/lib/libgfortran.a [] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 5515--5521 @texttt /usr/local/gfortran/lib/libquadmath.a[] @textrm should the For-tran co m-piler have Overfull \hbox (22.06111pt too wide) in paragraph at lines 5544--5544 []@texttt FC="/usr/local/gfortran/bin/gfortran -mtune=native -mmacosx-version- min=10.13"[] [66] [67] Overfull \hbox (119.7888pt too wide) in paragraph at lines 5746--5746 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] [68] [69] (Function and variable index) [70] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-admin.vrs) (Concept index) [71] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-admin.cps) (Environment variable index) [72] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-admin.ens) [73] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmr9.pfb> Output written on R-admin.pdf (78 pages, 510966 bytes). Transcript written on R-admin.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-data.texi @setfilename R-data.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-data.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] No file R-data.vrs. (Concept index) [29] No file R-data.cps. [30] ) (see the transcript file for additional information) Output written on R-data.pdf (33 pages, 265844 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.toc [-1]) [-2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.toc) (Acknowledgements) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.vrs [29]) (Concept index) [30] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 305727 bytes). Transcript written on R-data.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-data.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.toc [-1]) [-2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.toc) (Acknowledgements) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.aux) Chapter 1 [1] Writing index file R-data.cp [2] [3] [4] Underfull \hbox (badness 10000) in paragraph at lines 445--449 []@textrm Function @texttt write.foreign[] @textrm in pack-age [][]@textbf fore ign @textrm (@texttt https:// CRAN. R-project. org/ Chapter 2 [5] [6] [7] [8] [9] [10] Chapter 3 [11] [12] Chapter 4 [13] [14] [15] [16] [17] [18] Chapter 5 [19] Chapter 6 [20] Chapter 7 [21] [22] [23] [24] Chapter 8 [25] Chapter 9 [26] Appendix A [27] (Function and variable index) [28] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.vrs [29]) (Concept index) [30] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-data.cps) [31] ) (see the transcript file for additional information) Output written on R-data.pdf (35 pages, 305732 bytes). Transcript written on R-data.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-FAQ.texi @setfilename R-FAQ.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texmf-dist/fonts/m ap/pdftex/updmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. [1] Chapter 2 [2] [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 636--639 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 636--639 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 636--639 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ Underfull \hbox (badness 10000) in paragraph at lines 663--668 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 @texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia l-ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3134--3148 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3285--3293 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (49 pages, 356329 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texmf-dist/fonts/m ap/pdftex/updmap/pdftex.map}] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 636--639 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 636--639 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 636--639 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ Underfull \hbox (badness 10000) in paragraph at lines 663--668 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 @texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia l-ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3134--3148 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3285--3293 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 372656 bytes). Transcript written on R-FAQ.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texmf-dist/fonts/m ap/pdftex/updmap/pdftex.map}] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-FAQ.aux) [1] Chapter 2 [2] [3] [4] [5] [6] Underfull \hbox (badness 10000) in paragraph at lines 636--639 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 636--639 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 10000) in paragraph at lines 636--639 [][]@texttt https:// master. bioconductor. org/ help/ publications/ book s/ Underfull \hbox (badness 10000) in paragraph at lines 663--668 @textrm (doi: [][]10.1080/10618600.1996.10474713 (@texttt https:// doi. org/ 10. 1080/ 10618600. 1996. [7] [8] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 []@textrm See also [][]@texttt https:// en. wikipedia. org/ wiki/ R_progra mming_language# Underfull \hbox (badness 10000) in paragraph at lines 1531--1534 @texttt Commercialized_versions_of_R[][][] @textrm for point-ers to com-mer-cia l-ized ver-sions of Chapter 4 [18] Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] Writing index file R-FAQ.fn [38] Underfull \hbox (badness 10000) in paragraph at lines 3134--3148 @textrm and @texttt error.bars.by()[] @textrm func-tions in the [][]@textbf psy ch @textrm (@texttt https:// CRAN. R-project. org/ [39] [40] Underfull \hbox (badness 10000) in paragraph at lines 3285--3293 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the [41] Chapter 8 [42] Chapter 9 [43] [44] Chapter 10 [45] [46] [47] ) (see the transcript file for additional information) Output written on R-FAQ.pdf (51 pages, 372659 bytes). Transcript written on R-FAQ.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-ints.texi @setfilename R-ints.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] Underfull \hbox (badness 10000) in paragraph at lines 3840--3844 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [46] Underfull \hbox (badness 10000) in paragraph at lines 3874--3879 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10 [58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index) [62] No file R-ints.vrs. (Concept index) [63] No file R-ints.cps. [64] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/public/amsfonts/cm/cmti10.pfb> Output written on R-ints.pdf (67 pages, 402494 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.toc [-1]) [-2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] Underfull \hbox (badness 10000) in paragraph at lines 3840--3844 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [46] Underfull \hbox (badness 10000) in paragraph at lines 3874--3879 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10 [58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index) [62] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.vrs [63]) (Concept index) [64] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.cps) [65] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 453327 bytes). Transcript written on R-ints.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-ints.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.toc [-1]) [-2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.aux) Writing index file R-ints.cp [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1468--1468 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1469--1469 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1470--1470 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1471--1471 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [17] [18] [19] [20] [21] Chapter 2 [22] [23] [24] [25] [26] Chapter 3 [27] [28] Chapter 4 [29] [30] Chapter 5 [31] Chapter 6 [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Chapter 7 [43] Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm ing been built and in-stalled as a Mac macOS `frame-work'. Specif-i-cal ly, Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm it uses @texttt /Library/Frameworks/R.framework/R[]@textrm . This is a sym-bolic link, as Underfull \hbox (badness 10000) in paragraph at lines 3653--3662 @textrm frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu-ally re- solves to [44] Chapter 8 [45] Underfull \hbox (badness 10000) in paragraph at lines 3840--3844 []@textrm If true, make use of the [][]@textbf codetools @textrm (@texttt http s:// CRAN. R-project. org/ [46] Underfull \hbox (badness 10000) in paragraph at lines 3874--3879 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47] [48] [49] [50] [51] [52] [53] [54] [55] Chapter 9 [56] [57] Chapter 10 [58] Chapter 11 [59] Chapter 12 [60] [61] (Function and variable index) [62] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.vrs [63]) (Concept index) [64] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-ints.cps) [65] ) (see the transcript file for additional information) Output written on R-ints.pdf (69 pages, 453325 bytes). Transcript written on R-ints.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-lang.texi @setfilename R-lang.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] Chapter 1 Writing index file R-lang.cp Chapter 2 [1] [2] Cross reference values unknown; you must run TeX again. Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4336--4338 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] No file R-lang.vrs. (Concept Index) [52] No file R-lang.cps. Appendix A [53] [54] ) (see the transcript file for additional information) Output written on R-lang.pdf (57 pages, 326306 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4336--4338 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 374776 bytes). Transcript written on R-lang.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-lang.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.toc [-1] [-2]) [-3] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.toc) Chapter 1 (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.aux) Writing index file R-lang.cp Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Chapter 4 [21] [22] [23] [24] Chapter 5 [25] [26] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4336--4338 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.vrs [52]) (Concept Index) [53] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-lang.cps) Appendix A [54] [55] ) (see the transcript file for additional information) Output written on R-lang.pdf (60 pages, 374783 bytes). Transcript written on R-lang.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'mgcv' ... Converting parsed Rd's to LaTeX ............... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-exts.texi @setfilename R-exts.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Chapter 1 [1] Writing index file R-exts.cp Cross reference values unknown; you must run TeX again. [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2461--2461 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2463--2463 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 2704--2707 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2775--2775 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 10000) in paragraph at lines 2798--2804 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4434--4434 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] [50] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4453--4453 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4856--4856 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4858--4858 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4859--4859 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4874--4874 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [55] Underfull \hbox (badness 7558) in paragraph at lines 4929--4933 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 5340--5343 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [61] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5548--5548 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [63] Underfull \hbox (badness 10000) in paragraph at lines 5639--5640 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6096--6106 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7138--7145 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7317--7323 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8611--8620 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 8876--8886 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 8890--8891 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [103] Overfull \hbox (56.55324pt too wide) in paragraph at lines 9028--9028 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [104] Underfull \hbox (badness 10000) in paragraph at lines 9056--9058 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9202--9202 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9568--9570 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : Overfull \hbox (102.54274pt too wide) in paragraph at lines 9604--9604 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9623--9623 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] [111] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9634--9634 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9664--9664 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10507--10507 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [122] [123] [124] [125] [126] [127] [128] Overfull \hbox (16.31242pt too wide) in paragraph at lines 11084--11084 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 11927--11929 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12967--12967 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [151] Overfull \hbox (50.80455pt too wide) in paragraph at lines 13067--13067 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [152] Chapter 6 [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [160] [161] [162] [163] [164] [165] [166] [167] [168] Warning: unbalanced parentheses in @def... [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 10000) in paragraph at lines 15002--15008 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [175] [176] Chapter 8 [177] [178] [179] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15413--15413 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [180] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15471--15471 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15974--15981 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [187] Underfull \hbox (badness 10000) in paragraph at lines 16097--16101 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [188] (Function and variable index) [189] No file R-exts.vrs. (Concept index) [190] No file R-exts.cps. [191] ) (see the transcript file for additional information) Output written on R-exts.pdf (194 pages, 920253 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.toc) (Acknowledgements) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2461--2461 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2463--2463 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 2704--2707 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2775--2775 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 10000) in paragraph at lines 2798--2804 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4434--4434 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4453--4453 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4856--4856 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4858--4858 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4859--4859 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4874--4874 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [55] Underfull \hbox (badness 7558) in paragraph at lines 4929--4933 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 5340--5343 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [61] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5548--5548 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [63] Underfull \hbox (badness 10000) in paragraph at lines 5639--5640 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6096--6106 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7138--7145 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7317--7323 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8611--8620 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 8876--8886 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 8890--8891 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [103] Overfull \hbox (56.55324pt too wide) in paragraph at lines 9028--9028 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [104] Underfull \hbox (badness 10000) in paragraph at lines 9056--9058 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9202--9202 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9568--9570 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : Overfull \hbox (102.54274pt too wide) in paragraph at lines 9604--9604 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9623--9623 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] [111] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9634--9634 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9664--9664 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10507--10507 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 11084--11084 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 11927--11929 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12967--12967 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [151] Overfull \hbox (50.80455pt too wide) in paragraph at lines 13067--13067 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [152] Chapter 6 [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [160] [161] [162] [163] [164] [165] [166] [167] [168] Warning: unbalanced parentheses in @def... [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 10000) in paragraph at lines 15002--15008 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [175] [176] Chapter 8 [177] [178] [179] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15413--15413 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [180] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15471--15471 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15974--15981 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [187] Underfull \hbox (badness 10000) in paragraph at lines 16097--16101 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [188] (Function and variable index) [189] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.vrs [190] [191] [192]) Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [193] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.cps [194]) [195] ) (see the transcript file for additional information) Output written on R-exts.pdf (201 pages, 984920 bytes). Transcript written on R-exts.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-exts.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.toc) (Acknowledgements) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.aux) Chapter 1 [1] Writing index file R-exts.cp [2] [3] [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 494--497 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2461--2461 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2463--2463 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [28] [29] [30] Underfull \hbox (badness 10000) in paragraph at lines 2704--2707 [][][]@smallrm Some changes are linked from [][]@smalltt https:// isocpp. org / std/ standing-documents/ [31] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2775--2775 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] Underfull \hbox (badness 10000) in paragraph at lines 2798--2804 [][][]@smallrm See [][]@smalltt https:// isocpp. org/ std/ standing-documen ts/ sd-6-sg10-feature-test-recommendations[][][] @smallrm or [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] Overfull \hbox (59.67485pt too wide) in paragraph at lines 4434--4434 [] @texttt CXX="$(CXX)" CXXFLAGS="$(CXXFLAGS) $(CXXPICFLAGS) $(C_VISIB ILITY)" \[] Overfull \hbox (37.99364pt too wide) in paragraph at lines 4453--4453 []@texttt CXXFLAGS = `"${RBIN}" CMD config CXXFLAGS` `"${RBIN}" CMD config CXX PICFLAGS`[] [50] [51] [52] [53] [54] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4856--4856 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4858--4858 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4859--4859 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Overfull \hbox (55.2397pt too wide) in paragraph at lines 4874--4874 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [55] Underfull \hbox (badness 7558) in paragraph at lines 4929--4933 @texttt /Applications/CMake.app/Contents/bin/cmake[] @textrm and that should b e looked for [56] [57] [58] [59] [60] Underfull \hbox (badness 10000) in paragraph at lines 5340--5343 @texttt gcc/ C-Extensions. html[][][] @textrm and [][]@texttt https:// gcc. gnu. org/ onlinedocs/ gcc/ [61] [62] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5548--5548 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [63] Underfull \hbox (badness 10000) in paragraph at lines 5639--5640 [][][]@smallrm See [][]@smalltt https:// prereleases. llvm. org/ 11. 0. 0 / rc2/ tools/ clang/ docs/ ReleaseNotes. html# [64] [65] [66] [67] [68] Underfull \hbox (badness 10000) in paragraph at lines 6096--6106 []@textrm R-Forge ([][]R-Forge.r-project.org (@texttt https:// R-Forge. r-pro ject. org[]@textrm )[][]) and RForge Chapter 2 [69] [70] [71] [72] [73] [74] [75] [76] [77] [78] [79] [80] Underfull \hbox (badness 10000) in paragraph at lines 7138--7145 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and [81] [82] Underfull \hbox (badness 10000) in paragraph at lines 7317--7323 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text[] @textrm part of [83] [84] [85] [86] Chapter 3 [87] [88] [89] [90] [91] [92] [93] [94] Chapter 4 [95] [96] [97] [98] [99] Underfull \hbox (badness 10000) in paragraph at lines 8611--8620 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [100] [101] [102] Underfull \hbox (badness 10000) in paragraph at lines 8876--8886 @textrm See [][]@texttt https:// clang. llvm. org/ docs/ UsersManual. htm l# controlling-code-generation[][][]@textrm , Overfull \hbox (27.28387pt too wide) in paragraph at lines 8890--8891 [][][]@smallrm see [][]@smalltt https:// llvm. org/ devmtg/ 2014-04/ PDFs/ LightningTalks/ EuroLLVM%202014%20--%20container%20overflow. [103] Overfull \hbox (56.55324pt too wide) in paragraph at lines 9028--9028 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] [104] Underfull \hbox (badness 10000) in paragraph at lines 9056--9058 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by [105] Overfull \hbox (50.80455pt too wide) in paragraph at lines 9202--9202 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [106] [107] [108] [109] [110] Underfull \hbox (badness 10000) in paragraph at lines 9568--9570 [][][]@smallrm See [][]@smalltt https:// svn. r-project. org/ R-dev-web/ t runk/ CRAN/ QA/ Simon/ R-build/ fixpathR[][][]@smallrm : Overfull \hbox (102.54274pt too wide) in paragraph at lines 9604--9604 []@texttt boot.f:61: warning: type of 'ddot' does not match original declarati on [-Wlto-type-mismatch][] Overfull \hbox (125.53749pt too wide) in paragraph at lines 9623--9623 []@texttt rkpk2.f:77:5: warning: type of 'dstup' does not match original decla ration [-Wlto-type-mismatch][] [111] Overfull \hbox (119.7888pt too wide) in paragraph at lines 9634--9634 []@texttt reg.f:78:33: warning: type of 'dqrdc' does not match original declar ation [-Wlto-type-mismatch][] Overfull \hbox (22.06111pt too wide) in paragraph at lines 9664--9664 []@texttt Warning: Type mismatch in argument 'jpvt' at (1); passed REAL(8) to INTEGER(4)[] Chapter 5 [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10507--10507 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [122] [123] [124] [125] [126] [127] Overfull \hbox (16.31242pt too wide) in paragraph at lines 11084--11084 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 10000) in paragraph at lines 11927--11929 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] Overfull \hbox (22.06111pt too wide) in paragraph at lines 12967--12967 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [151] Overfull \hbox (50.80455pt too wide) in paragraph at lines 13067--13067 []@texttt typedef enum {CE_NATIVE, CE_UTF8, CE_LATIN1, CE_BYTES, CE_SYMBOL, CE _ANY} cetype_t;[] [152] Chapter 6 [153] [154] [155] [156] [157] [158] [159] Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 []@textrm Passing a variable-length string from C to For-tran is trick-ier, but Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 [][]@texttt https:// software. intel. com/ content/ www/ us/ en/ develo p/ documentation/ Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 @texttt fortran-compiler-oneapi-dev-guide-and-reference/ top/ compiler-refere nce/ Underfull \hbox (badness 10000) in paragraph at lines 13790--13795 @texttt mixed-language-programming/ standard-tools-for-interoperability/ bind . html[][][] [160] [161] [162] [163] [164] [165] [166] [167] [168] Warning: unbalanced parentheses in @def... [169] [170] [171] [172] [173] [174] Underfull \hbox (badness 10000) in paragraph at lines 15002--15008 []@textrm The graph-ics sys-tems are ex-posed in head-ers @texttt R_ext/Graphic sEngine.h[]@textrm , @texttt R_ Chapter 7 [175] [176] Chapter 8 [177] [178] [179] Overfull \hbox (22.06111pt too wide) in paragraph at lines 15413--15413 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [180] Overfull \hbox (33.55849pt too wide) in paragraph at lines 15471--15471 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [181] [182] [183] [184] [185] [186] Underfull \hbox (badness 10000) in paragraph at lines 15974--15981 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and [187] Underfull \hbox (badness 10000) in paragraph at lines 16097--16101 []@textrm If the de-sired ar-chi-tec-ture is known, look in @texttt Software\R -core\R32[] @textrm or [188] (Function and variable index) [189] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.vrs [190] [191] [192]) Overfull \vbox (1.73251pt too high) has occurred while \output is active Overfull \vbox (1.73251pt too high) has occurred while \output is active (Concept index) [193] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-exts.cps [194]) [195] ) (see the transcript file for additional information) Output written on R-exts.pdf (201 pages, 984931 bytes). Transcript written on R-exts.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' TEXINPUTS=".:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf R-intro.texi @setfilename R-intro.info This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Preface) Cross reference values unknown; you must run TeX again. Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] No file R-intro.vrs. Appendix E [94] No file R-intro.cps. Appendix F [95] [96] ) (see the transcript file for additional information) Output written on R-intro.pdf (99 pages, 571449 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.toc) (Preface) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 628142 bytes). Transcript written on R-intro.log. This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdfetex) restricted \write18 enabled. entering extended mode (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2021-02-20.11]: pdf, fonts, glyphs, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) Writing index file R-intro.vr (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/version.texi) [1{/usr/share/texmf -dist/fonts/map/pdftex/updmap/pdftex.map}] [2] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.toc) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.toc) (Preface) (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.aux) Chapter 1 [1] Writing index file R-intro.cp [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6648--6653 []@textrm Windows' UNC filepaths (such as @texttt \\server\dir1\dir2\file[] @t extrm and Underfull \hbox (badness 7064) in paragraph at lines 6648--6653 @texttt \\?\UNC\server\dir1\dir2\file[]@textrm ) are not sup-ported, but they may work in [80] Appendix A [81] [82] [83] Appendix B [84] [85] [86] [87] [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 628143 bytes). Transcript written on R-intro.log. make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' collecting LaTeX docs for package 'base' ... Converting parsed Rd's to LaTeX ........................................... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' PDF/LaTeX documentation: full reference index ... 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(/usr/share/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texmf-dist/tex/latex/psnfss/t1phv.fd) (./version.tex) (/usr/share/texmf-dist/tex/latex/psnfss/ts1ptm.fd) [1{/usr/share/texmf-dist/fon ts/map/pdftex/updmap/pdftex.map}] [1] [2] [1] [2] (./base-pkg.tex Chapter 1. (/usr/share/texmf-dist/tex/latex/inconsolata/t1zi4.fd) [3] [4] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [6] [7] Underfull \hbox (badness 1178) in paragraph at lines 322--325 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 561--567 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] [13] (/usr/share/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 2671) in paragraph at lines 1209--1212 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [21] [22] (/usr/share/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1532--1538 [25] [26] [27] [28] [29] [30] [31] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2008--2008 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [32] [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2446--2448 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2449--2454 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2449--2454 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \vbox (badness 10000) has occurred while \output is active [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 3836--3838 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 4077--4077 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 5115--5117 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6290--6290 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [93] [94] [95] [96] [97] [98] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6754--6756 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [99] [100] Underfull \hbox (badness 10000) in paragraph at lines 6919--6922 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [101] [102] [103] Underfull \hbox (badness 6063) in paragraph at lines 7101--7107 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7101--7107 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7101--7107 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7101--7107 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or Underfull \hbox (badness 1303) in paragraph at lines 7163--7170 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the [104] Underfull \hbox (badness 2111) in paragraph at lines 7174--7179 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] Underfull \hbox (badness 1077) in paragraph at lines 7492--7498 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7492--7498 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [109] [110] [111] [112] [113] Underfull \hbox (badness 2096) in paragraph at lines 7834--7838 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [114] [115] Underfull \hbox (badness 2351) in paragraph at lines 7952--7955 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [116] [117] [118] [119] [120] Underfull \hbox (badness 4479) in paragraph at lines 8281--8292 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [121] [122] [123] [124] [125] [126] Underfull \hbox (badness 1629) in paragraph at lines 8730--8742 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8730--8742 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8730--8742 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 1178) in paragraph at lines 9486--9490 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] Underfull \hbox (badness 6396) in paragraph at lines 11103--11111 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11103--11111 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 4569) in paragraph at lines 12221--12225 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12221--12225 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] Underfull \hbox (badness 2253) in paragraph at lines 13896--13898 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [199] Underfull \hbox (badness 1565) in paragraph at lines 13969--13973 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [200] Underfull \hbox (badness 4927) in paragraph at lines 14013--14015 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [201] Underfull \hbox (badness 3148) in paragraph at lines 14115--14120 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [202] Underfull \hbox (badness 1466) in paragraph at lines 14162--14165 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [203] [204] Underfull \hbox (badness 10000) in paragraph at lines 14289--14293 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14300--14303 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [205] [206] [207] [208] Underfull \hbox (badness 3965) in paragraph at lines 14594--14598 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] Underfull \hbox (badness 4429) in paragraph at lines 15372--15375 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [221] Underfull \hbox (badness 10000) in paragraph at lines 15478--15480 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15478--15480 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see Underfull \hbox (badness 10000) in paragraph at lines 15500--15505 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15500--15505 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15512--15516 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15512--15516 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want [222] Underfull \hbox (badness 2035) in paragraph at lines 15551--15555 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [223] Underfull \vbox (badness 10000) has occurred while \output is active [224] [225] [226] [227] [228] [229] [230] [231] Underfull \hbox (badness 2452) in paragraph at lines 16151--16155 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16151--16155 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [232] [233] Underfull \hbox (badness 1092) in paragraph at lines 16324--16329 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [234] [235] [236] [237] Underfull \hbox (badness 6741) in paragraph at lines 16577--16581 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [238] [239] [240] [241] [242] [243] [244] [245] [246] Underfull \vbox (badness 10000) has occurred while \output is active [247] [248] [249] [250] [251] [252] [253] [254] [255] Underfull \hbox (badness 1478) in paragraph at lines 17899--17902 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [256] [257] [258] [259] Underfull \hbox (badness 10000) in paragraph at lines 18159--18161 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / [260] [261] [262] [263] [264] [265] [266] [267] Underfull \hbox (badness 1442) in paragraph at lines 18759--18761 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [268] [269] [270] [271] [272] Underfull \hbox (badness 10000) in paragraph at lines 19090--19096 [273] [274] [275] Underfull \hbox (badness 1248) in paragraph at lines 19335--19338 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [276] [277] [278] [279] [280] Underfull \hbox (badness 4739) in paragraph at lines 19598--19600 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [281] [282] [283] Underfull \hbox (badness 1603) in paragraph at lines 19825--19828 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [284] [285] [286] Underfull \hbox (badness 1596) in paragraph at lines 20017--20022 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [287] [288] [289] [290] [291] [292] [293] [294] [295] Underfull \hbox (badness 2469) in paragraph at lines 20622--20627 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [296] Underfull \hbox (badness 10000) in paragraph at lines 20710--20714 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20710--20714 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [297] [298] [299] Underfull \hbox (badness 1014) in paragraph at lines 20880--20885 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] Underfull \hbox (badness 1264) in paragraph at lines 21729--21734 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: Underfull \hbox (badness 4441) in paragraph at lines 21758--21761 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] [322] Underfull \hbox (badness 6047) in paragraph at lines 22505--22507 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] Underfull \hbox (badness 10000) in paragraph at lines 23575--23581 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23575--23581 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [339] [340] [341] [342] [343] [344] [345] [346] Underfull \hbox (badness 2790) in paragraph at lines 24076--24079 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24076--24079 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [347] [348] [349] [350] Underfull \hbox (badness 1194) in paragraph at lines 24362--24365 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [351] [352] Underfull \hbox (badness 2368) in paragraph at lines 24569--24575 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24569--24575 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [353] [354] [355] [356] [357] [358] Underfull \hbox (badness 10000) in paragraph at lines 24952--24955 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [359] [360] [361] [362] [363] [364] [365] [366] [367] Underfull \hbox (badness 10000) in paragraph at lines 25569--25571 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] Underfull \hbox (badness 1038) in paragraph at lines 26414--26422 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26414--26422 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26414--26422 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26423--26426 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 26447--26449 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [380] [381] Underfull \hbox (badness 2142) in paragraph at lines 26588--26592 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 26645--26650 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [382] [383] [384] Underfull \hbox (badness 10000) in paragraph at lines 26937--26943 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 26937--26943 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 26937--26943 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 26950--26953 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [385] Underfull \hbox (badness 2689) in paragraph at lines 26976--26978 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 27011--27016 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27017--27028 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27017--27028 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 27029--27032 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [386] [387] [388] [389] [390] [391] [392] [393] Underfull \hbox (badness 10000) in paragraph at lines 27576--27579 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [394] Underfull \hbox (badness 7925) in paragraph at lines 27656--27660 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27656--27660 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27661--27670 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [395] [396] [397] Underfull \hbox (badness 1237) in paragraph at lines 27941--27945 []\T1/ptm/m/n/10 On most builds of \T1/phv/m/n/10 R \T1/ptm/m/n/10 a lead-ing \ T1/zi4/m/n/10 ~user \T1/ptm/m/n/10 will ex-pand to the home di-rec- [398] [399] [400] [401] [402] [403] [404] [405] [406] Underfull \hbox (badness 2726) in paragraph at lines 28534--28537 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] Underfull \hbox (badness 1603) in paragraph at lines 29284--29287 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [419] [420] [421] [422] [423] [424] Underfull \vbox (badness 10000) has occurred while \output is active [425] [426] [427] [428] [429] [430] [431] Underfull \hbox (badness 1533) in paragraph at lines 30279--30282 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [432] [433] [434] Underfull \hbox (badness 1163) in paragraph at lines 30442--30453 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] Underfull \hbox (badness 10000) in paragraph at lines 32026--32030 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32026--32030 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 32047--32049 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32050--32054 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tps : / / www . pcre . org / [458] [459] [460] [461] [462] [463] [464] [465] Underfull \hbox (badness 1655) in paragraph at lines 32605--32607 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] Underfull \hbox (badness 2261) in paragraph at lines 33793--33798 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [483] Underfull \hbox (badness 10000) in paragraph at lines 33820--33826 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 33820--33826 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] Underfull \hbox (badness 10000) in paragraph at lines 36419--36421 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [520] [521] [522] [523] [524] [525] [526] [527] [528] Underfull \hbox (badness 1072) in paragraph at lines 37016--37020 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 37021--37025 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 37051--37057 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 37051--37057 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 37051--37057 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 37063--37070 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 37063--37070 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 37063--37070 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 37063--37070 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [529] [530] [531] [532] Underfull \hbox (badness 2644) in paragraph at lines 37295--37299 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [533] [534] Underfull \hbox (badness 1142) in paragraph at lines 37447--37453 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] Underfull \hbox (badness 1565) in paragraph at lines 38724--38726 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [553] [554] [555] [556] [557] [558] [559] [560] [561] Underfull \hbox (badness 1137) in paragraph at lines 39314--39320 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39333--39338 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [562] [563] Underfull \hbox (badness 1616) in paragraph at lines 39446--39451 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [564] [565] [566] [567] [568] [569] [570] [571] Underfull \hbox (badness 1472) in paragraph at lines 39979--39982 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] Underfull \hbox (badness 10000) in paragraph at lines 40898--40902 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [585] [586] [587] [588] Underfull \hbox (badness 10000) in paragraph at lines 41149--41152 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [589] [590] [591] Underfull \hbox (badness 10000) in paragraph at lines 41333--41337 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [592] [593] [594] [595] [596] [597] [598] [599] Underfull \hbox (badness 10000) in paragraph at lines 41956--41959 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] [612] Underfull \hbox (badness 1990) in paragraph at lines 42878--42886 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 42878--42886 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [613] [614] [615] [616] [617] [618] [619] [620] Underfull \hbox (badness 1917) in paragraph at lines 43383--43390 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [621] [622] [623] [624] [625] [626] Underfull \hbox (badness 2452) in paragraph at lines 43835--43841 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [627] [628] [629] [630] [631] [632] Underfull \hbox (badness 3668) in paragraph at lines 44209--44211 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [633] Underfull \hbox (badness 2401) in paragraph at lines 44339--44343 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [634] [635] [636] Underfull \hbox (badness 2111) in paragraph at lines 44528--44533 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 44549--44554 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [637] [638] [639] [640] Underfull \hbox (badness 4001) in paragraph at lines 44774--44776 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [641] [642] [643] [644] [645] Underfull \hbox (badness 5417) in paragraph at lines 45137--45141 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [646] Underfull \hbox (badness 10000) in paragraph at lines 45198--45202 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [647]) (./compiler-pkg.tex [648] Chapter 2. [649] [650] [651] [652]) (./datasets-pkg.tex Chapter 3. [653] [654] [655] [656] [657] [658] Underfull \vbox (badness 1472) has occurred while \output is active [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] Overfull \vbox (4.26088pt too high) has occurred while \output is active [690] [691] [692] [693] [694] [695] Overfull \vbox (13.87083pt too high) has occurred while \output is active [696] Underfull \vbox (badness 2376) has occurred while \output is active [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] Overfull \vbox (10.49593pt too high) has occurred while \output is active [713] Overfull \vbox (15.49593pt too high) has occurred while \output is active [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728]) (./grDevices-pkg.tex Chapter 4. [729] [730] [731] [732] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [733] [734] [735] [736] [737] [738] [739] [740] [741] Underfull \hbox (badness 1424) in paragraph at lines 895--897 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [742] [743] [744] [745] [746] Underfull \hbox (badness 5175) in paragraph at lines 1189--1191 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [747] [748] Underfull \hbox (badness 2512) in paragraph at lines 1308--1310 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [749] Underfull \hbox (badness 1852) in paragraph at lines 1402--1405 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [750] [751] [752] Underfull \hbox (badness 1490) in paragraph at lines 1608--1613 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [753] [754] [755] [756] [757] [758] Underfull \hbox (badness 1325) in paragraph at lines 2014--2024 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [759] Underfull \hbox (badness 10000) in paragraph at lines 2126--2128 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [760] [761] [762] Underfull \hbox (badness 6758) in paragraph at lines 2305--2308 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [763] [764] [765] [766] [767] [768] [769] [770] [771] Underfull \hbox (badness 10000) in paragraph at lines 2914--2915 Underfull \vbox (badness 10000) has occurred while \output is active [772] [773] [774] [775] [776] [777] [778] [779] Underfull \hbox (badness 10000) in paragraph at lines 3488--3493 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [780] [781] [782] [783] [784] [785] [786] Underfull \vbox (badness 10000) has occurred while \output is active [787] Underfull \hbox (badness 10000) in paragraph at lines 3987--3990 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] Underfull \hbox (badness 10000) in paragraph at lines 4724--4729 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 10000) in paragraph at lines 4724--4729 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte nt / dam / acom / en / devnet / acrobat / pdfs / pdf _ Underfull \hbox (badness 1881) in paragraph at lines 4724--4729 \T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc -tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac . [798] Underfull \vbox (badness 10000) has occurred while \output is active [799] [800] Underfull \hbox (badness 1584) in paragraph at lines 4880--4882 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4884--4891 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [801] [802] [803] [804] Underfull \hbox (badness 1377) in paragraph at lines 5190--5195 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [805] Underfull \hbox (badness 1418) in paragraph at lines 5266--5273 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5284--5286 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [806] Underfull \hbox (badness 1377) in paragraph at lines 5395--5400 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [807] Underfull \hbox (badness 7344) in paragraph at lines 5464--5466 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [808] [809] Underfull \hbox (badness 2035) in paragraph at lines 5602--5611 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5602--5611 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5602--5611 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [810] [811] Underfull \hbox (badness 10000) in paragraph at lines 5670--5677 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5670--5677 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [812] [813] Underfull \hbox (badness 1546) in paragraph at lines 5812--5820 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [814] [815] [816] [817] [818] [819] [820] [821] Underfull \hbox (badness 10000) in paragraph at lines 6350--6353 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] [832] [833] Underfull \hbox (badness 1189) in paragraph at lines 7175--7177 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [834] Underfull \hbox (badness 10000) in paragraph at lines 7280--7282 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [835] [836] [837] [838] [839] Underfull \hbox (badness 3780) in paragraph at lines 7594--7600 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [840] [841] Underfull \hbox (badness 2680) in paragraph at lines 7796--7798 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [842] [843] [844]) (./graphics-pkg.tex Chapter 5. [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] Underfull \vbox (badness 10000) has occurred while \output is active [860] [861] [862] [863] [864] [865] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] Underfull \hbox (badness 1728) in paragraph at lines 2328--2330 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [881] Underfull \hbox (badness 1009) in paragraph at lines 2421--2428 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] Underfull \vbox (badness 10000) has occurred while \output is active [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] Underfull \hbox (badness 3229) in paragraph at lines 4596--4601 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [915] [916] [917] [918] Underfull \hbox (badness 10000) in paragraph at lines 5026--5032 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5026--5032 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [919] [920] Underfull \hbox (badness 10000) in paragraph at lines 5157--5160 [921 ] Underfull \hbox (badness 10000) in paragraph at lines 5218--5220 [922 ] [923] Underfull \hbox (badness 10000) in paragraph at lines 5408--5410 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [924] [925] [926] [927] [928] [929] [930] [931]pdfTeX warning (ext4): destinati on with the same identifier (name{Rfn.plot}) has been already used, duplicate i gnored \relax l.5890 \aliasA{plot}{plot.default}{plot} [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6795--6796 [][] [945 ] [946] Underfull \vbox (badness 10000) has occurred while \output is active [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] Underfull \hbox (badness 2012) in paragraph at lines 7620--7623 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] Underfull \hbox (badness 10000) in paragraph at lines 8886--8888 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8888--8890 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [977]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8968 \HeaderA{units}{Graphical Units}{units} [978] [979] [980] [981]) (./grid-pkg.tex [982] Chapter 6. [983] [984] [985] [986] [987] [988] [989] [990] Underfull \hbox (badness 2680) in paragraph at lines 483--486 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [991] [992] [993] [994] [995] [996] [997] [998] [999] Underfull \hbox (badness 4279) in paragraph at lines 1064--1073 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] Underfull \vbox (badness 10000) has occurred while \output is active [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] Underfull \hbox (badness 1067) in paragraph at lines 4489--4492 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1053] [1054] [1055] [1056] Underfull \hbox (badness 7256) in paragraph at lines 4734--4736 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] Underfull \hbox (badness 1824) in paragraph at lines 6606--6609 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1086] [1087] [1088] [1089]) (./methods-pkg.tex [1090] Chapter 7. [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] Underfull \vbox (badness 10000) has occurred while \output is active [1099] Underfull \vbox (badness 10000) has occurred while \output is active [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1117] [1118] [1119] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1120] [1121] [1122] [1123] [1124] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1125] [1126] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1127] [1128] [1129] [1130] [1131] [1132] [1133] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1134] [1135] [1136] [1137] [1138] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1139] [1140] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] Underfull \vbox (badness 10000) has occurred while \output is active [1159] Underfull \vbox (badness 10000) has occurred while \output is active [1160] [1161] [1162] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1163] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1164] [1165] [1166] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1175] [1176] [1177] [1178] Underfull \vbox (badness 10000) has occurred while \output is active [1179] [1180] [1181]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1182] [1183] [1184]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1185] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1186] [1187] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1221] [1222] [1223] [1224] [1225] [1226] [1227] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1228] [1229] [1230]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] Underfull \hbox (badness 3386) in paragraph at lines 1393--1396 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1251] [1252] [1253]) (./splines-pkg.tex [1254] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268]) (./stats-pkg.tex Chapter 10. [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1289] [1290] [1291] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] Underfull \hbox (badness 2503) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] Underfull \hbox (badness 1127) in paragraph at lines 4430--4433 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1334] [1335] [1336] [1337] [1338] Underfull \hbox (badness 3989) in paragraph at lines 4770--4777 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] Underfull \hbox (badness 2556) in paragraph at lines 5406--5409 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5423--5425 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1348] [1349] [1350] [1351] [1352] [1353] Underfull \hbox (badness 2503) in paragraph at lines 5820--5824 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] Underfull \hbox (badness 7081) in paragraph at lines 6614--6617 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6618--6620 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] Underfull \hbox (badness 10000) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] Underfull \vbox (badness 10000) has occurred while \output is active [1400] [1401] [1402] [1403] Underfull \hbox (badness 2626) in paragraph at lines 9144--9147 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1404] [1405] Underfull \hbox (badness 2503) in paragraph at lines 9251--9255 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] Underfull \hbox (badness 4518) in paragraph at lines 10587--10592 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1425] [1426] [1427] [1428] [1429] Underfull \hbox (badness 2142) in paragraph at lines 10948--10951 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10967--10970 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1430] Underfull \hbox (badness 1708) in paragraph at lines 11029--11033 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1431] [1432] [1433] [1434] [1435] Underfull \hbox (badness 1694) in paragraph at lines 11425--11428 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11909 \aliasA{hat}{influence.measures}{hat} [1444] [1445] Underfull \hbox (badness 1484) in paragraph at lines 12051--12053 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] Underfull \hbox (badness 10000) in paragraph at lines 12649--12651 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1455] [1456] [1457] [1458] [1459] Underfull \hbox (badness 2894) in paragraph at lines 12985--12989 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] Underfull \hbox (badness 4518) in paragraph at lines 13736--13741 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] Underfull \hbox (badness 4518) in paragraph at lines 14389--14394 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1481] [1482] Underfull \hbox (badness 8151) in paragraph at lines 14527--14531 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14534--14536 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] Underfull \hbox (badness 2503) in paragraph at lines 15607--15611 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1500] [1501] [1502] [1503] [1504] [1505] [1506] Underfull \hbox (badness 4621) in paragraph at lines 16120--16126 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/ ptm/m/n/10 and [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] Underfull \vbox (badness 10000) has occurred while \output is active [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] Underfull \hbox (badness 1377) in paragraph at lines 18731--18736 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18736--18739 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18749--18753 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18749--18753 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to [1547] Underfull \hbox (badness 2662) in paragraph at lines 18757--18761 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1548] [1549] Underfull \vbox (badness 10000) has occurred while \output is active [1550] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18982--18982 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18985--18985 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1551] [1552] [1553] [1554] [1555] [1556] [1557] Underfull \hbox (badness 1337) in paragraph at lines 19444--19447 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] Underfull \hbox (badness 3049) in paragraph at lines 19942--19946 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1566] [1567] [1568] [1569] Underfull \hbox (badness 1194) in paragraph at lines 20205--20208 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1570] [1571] [1572] [1573] [1574] [1575] [1576] Underfull \hbox (badness 2503) in paragraph at lines 20584--20587 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20611--20613 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] Underfull \hbox (badness 10000) in paragraph at lines 21689--21695 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] Underfull \hbox (badness 1337) in paragraph at lines 23046--23052 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 10000) in paragraph at lines 23609--23610 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1622] [1623] [1624] [1625] [1626] Underfull \hbox (badness 10000) in paragraph at lines 23882--23885 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23882--23885 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1627] [1628] [1629] [1630] [1631] [1632] [1633] [1634] Underfull \hbox (badness 1824) in paragraph at lines 24468--24474 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24468--24474 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1635] Underfull \hbox (badness 10000) in paragraph at lines 24489--24492 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = Underfull \hbox (badness 3690) in paragraph at lines 24558--24562 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1636] [1637] [1638] [1639] [1640] [1641] [1642] Underfull \vbox (badness 10000) has occurred while \output is active [1643] [1644] Underfull \hbox (badness 2165) in paragraph at lines 25067--25072 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1645] [1646] [1647] Underfull \hbox (badness 1867) in paragraph at lines 25272--25274 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25287--25291 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] Underfull \vbox (badness 10000) has occurred while \output is active [1670] Underfull \hbox (badness 3514) in paragraph at lines 26850--26855 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1671] [1672] [1673] [1674] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27084--27084 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1675] Underfull \hbox (badness 3514) in paragraph at lines 27120--27126 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1676] [1677] [1678] Underfull \hbox (badness 3514) in paragraph at lines 27334--27339 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1679] [1680] Underfull \hbox (badness 3514) in paragraph at lines 27421--27426 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1681] Underfull \hbox (badness 3514) in paragraph at lines 27486--27491 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1682] Underfull \hbox (badness 3514) in paragraph at lines 27580--27585 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1683] [1684] Underfull \hbox (badness 6691) in paragraph at lines 27672--27677 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1685] [1686] [1687] [1688] [1689] [1690] [1691] [1692] Underfull \hbox (badness 4024) in paragraph at lines 28202--28205 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] Underfull \hbox (badness 5431) in paragraph at lines 28808--28810 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1702] [1703] [1704] [1705] Underfull \hbox (badness 5431) in paragraph at lines 29018--29021 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1706] [1707] [1708] [1709] [1710] Underfull \hbox (badness 1337) in paragraph at lines 29333--29337 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1711] [1712] [1713] [1714] Underfull \hbox (badness 1616) in paragraph at lines 29645--29648 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 3557) in paragraph at lines 30779--30783 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1733] [1734] Underfull \vbox (badness 10000) has occurred while \output is active [1735] [1736] [1737] Underfull \hbox (badness 1337) in paragraph at lines 31143--31147 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] Underfull \hbox (badness 1337) in paragraph at lines 31672--31676 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31686--31688 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1746] [1747] [1748] Overfull \hbox (0.71648pt too wide) in paragraph at lines 31879--31879 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1749] [1750] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32040--32040 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1751] [1752] [1753] [1754] [1755]) (./stats4-pkg.tex [1756] Chapter 11. [1757] [1758] [1759] Underfull \vbox (badness 10000) has occurred while \output is active [1760] [1761] [1762] [1763] [1764]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1765] [1766] [1767]) (./tcltk-pkg.tex [1768] Chapter 12. [1769] [1770] [1771] [1772] [1773] [1774] [1775] Underfull \vbox (badness 10000) has occurred while \output is active [1776] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788]) (./tools-pkg.tex Chapter 13. [1789] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1790] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1791] [1792] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1793] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1794] [1795] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1796] [1797] [1798] [1799] [1800] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1801] [1802] [1803] [1804] [1805] Underfull \hbox (badness 4441) in paragraph at lines 1150--1160 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1806] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1807] [1808] [1809] [1810] [1811] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1812] [1813] Underfull \hbox (badness 7981) in paragraph at lines 1707--1712 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1814] Underfull \hbox (badness 1082) in paragraph at lines 1714--1716 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1815] [1816] [1817]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1911 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1818] [1819] [1820] [1821] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2213--2213 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1822] [1823] [1824] Underfull \hbox (badness 7981) in paragraph at lines 2382--2388 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1825] [1826] [1827] [1828] [1829] [1830] [1831] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2866. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2867. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2867. [1832] [1833] [1834] [1835] Underfull \hbox (badness 1424) in paragraph at lines 3150--3152 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] Underfull \hbox (badness 10000) in paragraph at lines 3851--3853 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1847] [1848] Underfull \hbox (badness 10000) in paragraph at lines 3990--3993 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1849] Underfull \hbox (badness 1137) in paragraph at lines 4092--4094 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1850] [1851] [1852] [1853] [1854] Underfull \hbox (badness 1796) in paragraph at lines 4400--4405 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [1855] Underfull \hbox (badness 1838) in paragraph at lines 4474--4480 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4474--4480 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1856] [1857] [1858] [1859] Underfull \hbox (badness 2197) in paragraph at lines 4749--4759 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [1860] Underfull \hbox (badness 1571) in paragraph at lines 4812--4816 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1861] [1862] [1863]) (./utils-pkg.tex [1864] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [1865] [1866] [1867] [1868] [1869] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 10000) in paragraph at lines 719--725 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 719--725 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1875] [1876] Underfull \hbox (badness 5847) in paragraph at lines 855--861 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 855--861 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1877] Underfull \hbox (badness 3861) in paragraph at lines 923--928 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1878] [1879] [1880] Underfull \hbox (badness 3323) in paragraph at lines 1094--1102 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1881] [1882] [1883] [1884] [1885] [1886] [1887] Underfull \hbox (badness 1371) in paragraph at lines 1611--1613 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1888] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1681. [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] Underfull \hbox (badness 2057) in paragraph at lines 2224--2226 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1897] [1898] [1899] [1900] [1901]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2575 ... the Clipboard in MS Windows}{clipboard} [1902] [1903] Underfull \hbox (badness 1748) in paragraph at lines 2742--2745 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1904] [1905] [1906] [1907] [1908] [1909] Underfull \hbox (badness 5388) in paragraph at lines 3151--3155 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3156--3159 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] Underfull \hbox (badness 1430) in paragraph at lines 3935--3943 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1921] Underfull \hbox (badness 1231) in paragraph at lines 4012--4024 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1922] [1923] Underfull \hbox (badness 10000) in paragraph at lines 4170--4172 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4868 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4868 ...mat Unordered and Ordered Lists}{format} [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 1622) in paragraph at lines 5387--5391 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6105. Underfull \hbox (badness 1371) in paragraph at lines 6109--6111 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1953] [1954] Underfull \hbox (badness 1502) in paragraph at lines 6198--6203 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6198--6203 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1955] [1956] Underfull \hbox (badness 10000) in paragraph at lines 6371--6380 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1957] Underfull \hbox (badness 2150) in paragraph at lines 6435--6438 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1958] [1959] Underfull \hbox (badness 3118) in paragraph at lines 6573--6575 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1960] [1961] Underfull \hbox (badness 1325) in paragraph at lines 6751--6755 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6763--6769 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1962] Underfull \hbox (badness 10000) in paragraph at lines 6835--6838 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6835--6838 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6843--6846 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [1963] Underfull \hbox (badness 3219) in paragraph at lines 6914--6921 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6914--6921 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6914--6921 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 6914--6921 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 6922--6925 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1964] [1965] Underfull \hbox (badness 1546) in paragraph at lines 7048--7051 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will Underfull \hbox (badness 10000) in paragraph at lines 7081--7086 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] Underfull \hbox (badness 10000) in paragraph at lines 7868--7870 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] Underfull \vbox (badness 10000) has occurred while \output is active [1986] [1987] [1988] [1989] Underfull \hbox (badness 10000) in paragraph at lines 8606--8608 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8628--8633 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1990] [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 1248) in paragraph at lines 9154--9158 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [1997] Underfull \hbox (badness 1789) in paragraph at lines 9232--9234 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] Underfull \vbox (badness 5533) has occurred while \output is active [2007] [2008] [2009] Underfull \hbox (badness 1097) in paragraph at lines 10069--10072 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2010] [2011] Underfull \hbox (badness 3000) in paragraph at lines 10205--10210 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] Underfull \hbox (badness 2134) in paragraph at lines 10787--10792 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2020] Underfull \hbox (badness 10000) in paragraph at lines 10843--10848 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10843--10848 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2021] [2022] [2023] [2024] [2025] [2026] [2027] Underfull \hbox (badness 2469) in paragraph at lines 11337--11341 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11337--11341 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2028] [2029] [2030] [2031] [2032] [2033] Underfull \hbox (badness 4060) in paragraph at lines 11753--11756 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2034] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11776--11776 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2035] [2036] [2037] Underfull \hbox (badness 2150) in paragraph at lines 12015--12017 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2038] [2039] [2040] [2041] Underfull \hbox (badness 10000) in paragraph at lines 12234--12238 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12265--12271 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2042] [2043] Underfull \hbox (badness 1009) in paragraph at lines 12459--12471 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2044] Underfull \hbox (badness 4779) in paragraph at lines 12499--12501 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12529--12536 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2045] [2046] [2047] [2048] [2049] [2050] Underfull \hbox (badness 3780) in paragraph at lines 12937--12941 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 12953--12956 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2051] [2052] [2053] Underfull \hbox (badness 2302) in paragraph at lines 13158--13160 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2054] [2055] [2056] [2057] [2058] Underfull \hbox (badness 10000) in paragraph at lines 13456--13461 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13465--13468 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2059] Underfull \vbox (badness 10000) has occurred while \output is active [2060] [2061] [2062] [2063] [2064] Underfull \hbox (badness 2932) in paragraph at lines 13889--13896 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 13889--13896 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2065] [2066] [2067] [2068] Underfull \hbox (badness 6510) in paragraph at lines 14198--14202 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14205--14208 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14205--14208 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2069] [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] Underfull \hbox (badness 10000) in paragraph at lines 14871--14876 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 14871--14876 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and [2078] Underfull \hbox (badness 1052) in paragraph at lines 14877--14879 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 14936--14939 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] [2089] [2090] Underfull \hbox (badness 10000) in paragraph at lines 15709--15711 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2091] [2092] [2093]) [2094] [2095] [2096] (./KernSmooth-pkg.tex Chapter 15. [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106]) (./MASS-pkg.tex Chapter 16. [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] Underfull \hbox (badness 7944) in paragraph at lines 2703--2706 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2144] [2145] [2146] Underfull \hbox (badness 10000) in paragraph at lines 2873--2878 \T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative [2147] [2148] Underfull \hbox (badness 4686) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] Underfull \hbox (badness 1117) in paragraph at lines 4802--4805 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2174] Underfull \hbox (badness 1117) in paragraph at lines 4880--4883 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] Underfull \hbox (badness 1117) in paragraph at lines 7117--7124 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2205] Underfull \hbox (badness 3138) in paragraph at lines 7188--7194 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2206] [2207] [2208] Underfull \hbox (badness 6775) in paragraph at lines 7367--7370 \T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] Underfull \hbox (badness 4686) in paragraph at lines 8000--8002 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2255] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2256] [2257] [2258] [2259] Underfull \hbox (badness 5119) in paragraph at lines 509--513 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2260] [2261] Underfull \hbox (badness 2418) in paragraph at lines 605--608 []\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2262] [2263] Underfull \hbox (badness 1701) in paragraph at lines 758--762 []\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t ion; [][]$\T1/zi4/m/it/10 https : / / www . netlib . org / [2264] [2265] [2266] [2267] Underfull \hbox (badness 10000) in paragraph at lines 1048--1050 []\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/it/10 to = [2268] [2269]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1160 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1160 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1218--1224 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2270pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol ,dsCMatrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.1249 \item[chol] \code{signature(x = "dsCMatrix", pivot = "logical")}:pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.R dash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.1249 \item[chol] \code{signature(x = "dsCMatrix", pivot = "logical")}:pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.R dash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.1249 \item[chol] \code{signature(x = "dsCMatrix", pivot = "logical")}:] [2271] [2272] Underfull \hbox (badness 2277) in paragraph at lines 1418--1421 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2273] [2274] Underfull \hbox (badness 1097) in paragraph at lines 1590--1593 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1596--1600 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2275]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1653 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1653 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1654 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1675 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1686 \aliasA{rowSums}{colSums}{rowSums} [2276] [2277] [2278] Underfull \hbox (badness 3547) in paragraph at lines 1905--1908 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2279] [2280] [2281] [2282] [2283] Underfull \hbox (badness 1360) in paragraph at lines 2328--2332 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2284] [2285] [2286] [2287] Underfull \hbox (badness 2717) in paragraph at lines 2644--2648 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2288] [2289] Underfull \hbox (badness 6842) in paragraph at lines 2734--2737 []\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2290] Underfull \hbox (badness 10000) in paragraph at lines 3021--3025 []\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2291] [2292] [2293] Underfull \hbox (badness 1173) in paragraph at lines 3231--3233 []\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3278--3280 [][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2294] [2295] Underfull \hbox (badness 1354) in paragraph at lines 3477--3480 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2296] [2297] [2298] [2299] [2300] Underfull \hbox (badness 6188) in paragraph at lines 3887--3890 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3890--3893 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = [2301] [2302] Underfull \hbox (badness 2318) in paragraph at lines 4004--4008 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/it/10 "dMatrix"\T1/ptm/m/n/10 , [2303] [2304] Underfull \hbox (badness 5245) in paragraph at lines 4140--4144 []\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/it/10 determinant[][][](x) [2305] [2306] [2307] [2308] [2309] [2310] Overfull \hbox (8.27782pt too wide) in paragraph at lines 4562--4562 [] \T1/zi4/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB /Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4565--4565 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2311] [2312] Underfull \hbox (badness 1931) in paragraph at lines 4797--4799 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2313] [2314] [2315] [2316] [2317] Underfull \hbox (badness 1005) in paragraph at lines 5103--5108 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5103--5108 \T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5122--5125 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2318] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5170--5170 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2319] Underfull \hbox (badness 3229) in paragraph at lines 5271--5280 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the [2320] Underfull \hbox (badness 10000) in paragraph at lines 5313--5315 []\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 4995) in paragraph at lines 5318--5321 []\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5328--5331 []\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2321] [2322] [2323] [2324] [2325] Underfull \hbox (badness 1014) in paragraph at lines 5707--5710 []\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2326] [2327] [2328] [2329] Underfull \hbox (badness 10000) in paragraph at lines 6022--6025 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2330] Underfull \hbox (badness 2478) in paragraph at lines 6134--6139 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2331] Underfull \hbox (badness 10000) in paragraph at lines 6142--6145 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2332] Underfull \hbox (badness 10000) in paragraph at lines 6334--6337 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2333] Underfull \hbox (badness 10000) in paragraph at lines 6432--6435 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2334] Underfull \hbox (badness 10000) in paragraph at lines 6507--6510 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2335] Underfull \hbox (badness 2050) in paragraph at lines 6583--6586 []\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2336] [2337] [2338] [2339] [2340] Underfull \hbox (badness 6268) in paragraph at lines 6896--6900 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2341]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6995 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 7088--7090 []\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode [2342] Underfull \hbox (badness 4846) in paragraph at lines 7093--7096 []\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 7098--7101 [2343]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7171 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7279 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7379 ...tcrossprod}{matrix-products}{tcrossprod} [2344pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.7536 \code{boolArith = TRUE} for regular (``non cross'') matrixpdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrossprod.Rdash.method s}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.7536 \code{boolArith = TRUE} for regular (``non cross'') matrix] Underfull \hbox (badness 10000) in paragraph at lines 7553--7558 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7553--7558 \T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7562--7564 []\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7564--7566 []\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7568--7569 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2345] [2346] Underfull \hbox (badness 1430) in paragraph at lines 7712--7717 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2347] Underfull \hbox (badness 10000) in paragraph at lines 7783--7786 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2348] Underfull \hbox (badness 10000) in paragraph at lines 7839--7841 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X [2349] [2350] Underfull \vbox (badness 10000) has occurred while \output is active [2351] Underfull \hbox (badness 2478) in paragraph at lines 8046--8051 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 8054--8057 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2352] [2353] Underfull \hbox (badness 5924) in paragraph at lines 8248--8250 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2354]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8288 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8288 \HeaderA{norm}{Matrix Norms}{norm} [2355] [2356] Underfull \hbox (badness 10000) in paragraph at lines 8561--8564 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2357] Underfull \hbox (badness 10000) in paragraph at lines 8651--8654 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2358] Underfull \hbox (badness 10000) in paragraph at lines 8727--8730 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2359] Underfull \vbox (badness 10000) has occurred while \output is active [2360] Underfull \hbox (badness 10000) in paragraph at lines 8853--8855 []\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8858--8861 []\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2361] [2362] [2363] [2364]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.9090 \aliasA{qr}{qr-methods}{qr} [2365] [2366] [2367] [2368]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9418 ... the Reciprocal Condition Number}{rcond} [2369] [2370] [2371] [2372] [2373] Underfull \hbox (badness 2351) in paragraph at lines 9722--9730 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9722--9730 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9722--9730 \T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 , [2374] [2375] [2376] [2377]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9995 \aliasA{solve}{solve-methods}{solve} [2378] Underfull \hbox (badness 10000) in paragraph at lines 10158--10165 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse = [2379] Underfull \hbox (badness 4403) in paragraph at lines 10219--10222 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10289--10292 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2380] Underfull \hbox (badness 10000) in paragraph at lines 10325--10328 []\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10336--10340 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2381] [2382] [2383] [2384] [2385] [2386] [2387] [2388] Underfull \hbox (badness 10000) in paragraph at lines 10917--10925 []\T1/zi4/m/it/10 (object = "sparseMatrix",uniqT=FALSE)\T1/ptm/m/n/10 : Re-turn s an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 10917--10925 \T1/zi4/m/it/10 "sparseSummary" \T1/ptm/m/n/10 which is ba-si-cally a [][]\T1/z i4/m/it/10 data.frame[][][] \T1/ptm/m/n/10 with columns \T1/zi4/m/it/10 (i,j,x) \T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 10942--10950 []\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10942--10950 \T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2389]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.11008 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2390] [2391] Underfull \hbox (badness 5036) in paragraph at lines 11194--11196 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2392] [2393] Underfull \hbox (badness 10000) in paragraph at lines 11401--11404 []\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2394] Underfull \vbox (badness 10000) has occurred while \output is active [2395] [2396] [2397] Underfull \hbox (badness 10000) in paragraph at lines 11670--11675 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2398] Underfull \hbox (badness 2057) in paragraph at lines 11750--11752 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2399] [2400] Underfull \hbox (badness 10000) in paragraph at lines 11919--11924 []\T1/ptm/m/n/10 Note that all \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 spMatrix[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/it/10 sparseMatrix[] [][](*,repr="T") \T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 11925--11931 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2401] Underfull \hbox (badness 1902) in paragraph at lines 11960--11964 []\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2402] [2403] [2404] [2405] [2406] [2407] [2408] Underfull \hbox (badness 6910) in paragraph at lines 12557--12559 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2409] Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12604. Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12604. [2410] [2411]) (./boot-pkg.tex [2412] Chapter 18. [2413] [2414] [2415] [2416] [2417] [2418] [2419] [2420] [2421] [2422] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2423] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2424] Underfull \vbox (badness 10000) has occurred while \output is active [2425] [2426] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will [2427] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2428] [2429] [2430] [2431] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2432] [2433] [2434] [2435] [2436] [2437] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2438] [2439] Underfull \vbox (badness 10000) has occurred while \output is active [2440] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2441] [2442] [2443] [2444] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2445] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2446] [2447] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2448] [2449] [2450] [2451] [2452] [2453] [2454] [2455] [2456] [2457] [2458] [2459] [2460] [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] [2470] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479] [2480] [2481] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2482] [2483] [2484] [2485] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2486] [2487] [2488] [2489] [2490] [2491] [2492] [2493] [2494] [2495] [2496] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2497] [2498] [2499] [2500] [2501] [2502] [2503] [2504] [2505] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2506] [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515]) (./class-pkg.tex [2516] Chapter 19. [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525] [2526] [2527] [2528] [2529] [2530] [2531] [2532]) (./cluster-pkg.tex Chapter 20. [2533] [2534] [2535] [2536] [2537] Underfull \vbox (badness 7777) has occurred while \output is active [2538] [2539] [2540] [2541] [2542] Underfull \hbox (badness 4144) in paragraph at lines 691--694 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2543] [2544] Underfull \hbox (badness 1412) in paragraph at lines 783--788 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2545] Underfull \hbox (badness 10000) in paragraph at lines 881--883 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2546] [2547] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2548] [2549] [2550] Underfull \hbox (badness 6110) in paragraph at lines 1207--1211 []\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2551] [2552] [2553] Underfull \hbox (badness 10000) in paragraph at lines 1476--1479 [2554] [2555] Underfull \hbox (badness 2503) in paragraph at lines 1588--1591 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2556] [2557] [2558] [2559] [2560] [2561] [2562] [2563] Underfull \hbox (badness 10000) in paragraph at lines 2182--2185 Underfull \hbox (badness 10000) in paragraph at lines 2196--2202 [][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2564] [2565] [2566] [2567] Underfull \hbox (badness 6675) in paragraph at lines 2431--2433 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2568] [2569] [2570] [2571] [2572] [2573] [2574] Underfull \hbox (badness 2980) in paragraph at lines 2961--2965 [][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [2575] [2576] [2577] [2578] [2579] [2580] Underfull \hbox (badness 1142) in paragraph at lines 3302--3305 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2581] [2582] Underfull \hbox (badness 1142) in paragraph at lines 3421--3424 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2583] [2584] [2585] Underfull \hbox (badness 2582) in paragraph at lines 3644--3649 [][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p tm/m/n/10 , [2586] Underfull \hbox (badness 3209) in paragraph at lines 3706--3711 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3706--3711 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx [2587] [2588] [2589] [2590] [2591] Underfull \hbox (badness 10000) in paragraph at lines 3998--4000 []\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2592] [2593] [2594] [2595] Underfull \hbox (badness 2626) in paragraph at lines 4227--4232 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col = [2596] Underfull \hbox (badness 1383) in paragraph at lines 4305--4310 []\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2597] [2598] [2599] [2600] [2601] [2602] [2603] Underfull \hbox (badness 10000) in paragraph at lines 4748--4750 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side [2604] [2605]) (./codetools-pkg.tex [2606] Chapter 21. [2607] [2608] [2609] [2610] [2611]) (./foreign-pkg.tex [2612] Chapter 22. [2613] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2614] [2615] [2616] [2617] [2618] [2619] [2620] Underfull \hbox (badness 10000) in paragraph at lines 505--514 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to Underfull \hbox (badness 7133) in paragraph at lines 550--558 []\T1/ptm/m/n/10 URL [][]$\T1/zi4/m/it/10 https : / / docs . microsoft . com / en-[]us / windows / win32 / intl / code-[]page-[]identifiers$[][] [2621] Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2622] [2623] [2624] Underfull \hbox (badness 10000) in paragraph at lines 812--813 [2625] [2626] [2627] Underfull \hbox (badness 10000) in paragraph at lines 990--992 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2628] [2629] [2630] [2631] Underfull \hbox (badness 10000) in paragraph at lines 1270--1276 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2632] [2633]) (./lattice-pkg.tex [2634] Chapter 23. [2635] Underfull \hbox (badness 1484) in paragraph at lines 117--121 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 117--121 \T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2636] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] [2645] [2646] [2647] [2648] [2649] [2650] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2651] Underfull \vbox (badness 4416) has occurred while \output is active [2652] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 strip.default[][][]\T1/ptm/m/n/10 , [2653] [2654] [2655] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2656] [2657] [2658] [2659] [2660] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2661] [2662] [2663] [2664] [2665] [2666] [2667] [2668] [2669] [2670] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2671] Underfull \hbox (badness 2486) in paragraph at lines 2970--2974 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2672] [2673] [2674] [2675] [2676] [2677] [2678]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.parallel}) has been already used, duplic ate ignored \relax l.3444 \aliasA{parallel}{B\_08\_splom}{parallel} [2679] [2680] [2681] [2682] [2683] [2684] [2685] Underfull \hbox (badness 5696) in paragraph at lines 3935--3939 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2686] [2687] Underfull \hbox (badness 1173) in paragraph at lines 4074--4078 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4101--4103 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2688] [2689] [2690] Underfull \hbox (badness 3492) in paragraph at lines 4297--4307 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4322--4325 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4325--4327 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p lot.polygon \T1/ptm/m/n/10 and [2691] [2692] [2693] [2694] [2695] [2696] [2697] [2698] [2699] [2700] Underfull \hbox (badness 6157) in paragraph at lines 5048--5051 []\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and [2701] [2702] [2703] [2704] [2705] [2706] Underfull \hbox (badness 10000) in paragraph at lines 5501--5504 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5501--5504 \T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2707] [2708] [2709] [2710] [2711] Underfull \hbox (badness 4805) in paragraph at lines 5863--5867 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 []\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5874--5881 \T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/it/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5874--5881 [][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2712] [2713] [2714] [2715] Underfull \hbox (badness 4242) in paragraph at lines 6174--6179 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6174--6179 \T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2716] [2717] Underfull \hbox (badness 2310) in paragraph at lines 6290--6295 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round if [2718] [2719] [2720] [2721] [2722] [2723] [2724] [2725] [2726] [2727] [2728] Underfull \hbox (badness 3168) in paragraph at lines 7072--7076 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2729] [2730] [2731] [2732] Underfull \hbox (badness 2012) in paragraph at lines 7343--7346 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2733] [2734] Underfull \hbox (badness 3333) in paragraph at lines 7515--7517 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing [2735] [2736] [2737] Underfull \vbox (badness 10000) has occurred while \output is active [2738] [2739] [2740] Underfull \hbox (badness 1436) in paragraph at lines 7929--7935 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] Underfull \hbox (badness 10000) in paragraph at lines 8487--8490 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp ose \T1/ptm/m/n/10 from [2749] Underfull \hbox (badness 1092) in paragraph at lines 8533--8535 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2750] [2751] Underfull \hbox (badness 3895) in paragraph at lines 8694--8697 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2752] Underfull \hbox (badness 1515) in paragraph at lines 8770--8774 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2753] [2754] Underfull \hbox (badness 6316) in paragraph at lines 8876--8881 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8893--8896 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2755] [2756] [2757] [2758] Overfull \hbox (1.94879pt too wide) in paragraph at lines 9181--9185 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/it/10 left,right,left.name,right.name,condition [2759] [2760] [2761] [2762] [2763] [2764] [2765] Underfull \hbox (badness 2310) in paragraph at lines 9639--9643 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9644--9647 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 , [2766] [2767] [2768]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9870 \aliasA{melanoma}{H\_melanoma}{melanoma} [2769] [2770] [2771] Underfull \hbox (badness 4144) in paragraph at lines 10094--10097 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10094--10097 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it /10 https : / / ruralhealth . und . edu / projects / [2772] [2773]) (./mgcv-pkg.tex [2774] Chapter 24. [2775] [2776] [2777] Underfull \hbox (badness 1142) in paragraph at lines 184--188 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 209--214 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2778] [2779] [2780] Underfull \vbox (badness 5345) has occurred while \output is active [2781] Underfull \hbox (badness 10000) in paragraph at lines 377--384 [][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 377--384 [][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][] \T1/ptm/m/n/10 , [2782] [2783] [2784] [2785] [2786] Underfull \hbox (badness 1406) in paragraph at lines 702--703 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2787] [2788] [2789] Underfull \hbox (badness 1158) in paragraph at lines 812--814 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion Underfull \hbox (badness 1259) in paragraph at lines 875--876 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2790] [2791] [2792] [2793] [2794] Underfull \hbox (badness 1281) in paragraph at lines 1159--1160 []\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n /10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt m/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2795] [2796] Underfull \vbox (badness 10000) has occurred while \output is active [2797] Underfull \vbox (badness 10000) has occurred while \output is active [2798] [2799] Underfull \vbox (badness 10000) has occurred while \output is active [2800] [2801] [2802] [2803] [2804] [2805] [2806] [2807] [2808] [2809] [2810] [2811] [2812] [2813] [2814] [2815] Underfull \hbox (badness 1142) in paragraph at lines 2360--2364 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2386--2391 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2816] [2817] [2818] [2819] [2820] [2821] Underfull \vbox (badness 10000) has occurred while \output is active [2822] Underfull \vbox (badness 10000) has occurred while \output is active [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] [2836] [2837] [2838] [2839] Underfull \hbox (badness 10000) in paragraph at lines 3821--3825 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2840] [2841] Underfull \vbox (badness 10000) has occurred while \output is active [2842] [2843] [2844] Underfull \hbox (badness 1184) in paragraph at lines 4107--4111 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2845] [2846] [2847] [2848] [2849] [2850] [2851] [2852] [2853] [2854] [2855] [2856] Underfull \hbox (badness 1142) in paragraph at lines 4828--4832 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2857] Underfull \hbox (badness 1231) in paragraph at lines 4932--4934 []\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with [2858] [2859] [2860] Underfull \vbox (badness 10000) has occurred while \output is active [2861] [2862] [2863] [2864] Underfull \hbox (badness 2181) in paragraph at lines 5376--5377 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2865] [2866] [2867] [2868] [2869] [2870] [2871] Underfull \hbox (badness 10000) in paragraph at lines 5765--5766 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2872] [2873] [2874] [2875] [2876] [2877] [2878] [2879] [2880] [2881] [2882] Underfull \hbox (badness 1142) in paragraph at lines 6350--6354 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2883] [2884] [2885] Underfull \vbox (badness 10000) has occurred while \output is active [2886] [2887] [2888] [2889] Underfull \hbox (badness 1087) in paragraph at lines 6722--6723 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2890] [2891] Underfull \vbox (badness 10000) has occurred while \output is active [2892] Underfull \vbox (badness 10000) has occurred while \output is active [2893] [2894] [2895] [2896] [2897] [2898] [2899] [2900] [2901] [2902] [2903] [2904] [2905] Underfull \hbox (badness 1242) in paragraph at lines 7668--7669 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2906] [2907] [2908] [2909] [2910] [2911] [2912] [2913] [2914] [2915] [2916] Underfull \hbox (badness 6001) in paragraph at lines 8308--8310 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] Underfull \vbox (badness 10000) has occurred while \output is active [2927] [2928] Underfull \hbox (badness 1038) in paragraph at lines 9057--9060 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9057--9060 \T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2929] Underfull \hbox (badness 10000) in paragraph at lines 9113--9116 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2930] [2931] [2932] [2933] [2934] [2935] [2936] [2937] [2938] [2939] [2940] Underfull \hbox (badness 1852) in paragraph at lines 9784--9787 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2941] [2942] [2943] Underfull \hbox (badness 1852) in paragraph at lines 9953--9956 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2944] Underfull \vbox (badness 10000) has occurred while \output is active [2945] Underfull \vbox (badness 10000) has occurred while \output is active [2946] Underfull \hbox (badness 1205) in paragraph at lines 10185--10187 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10185--10187 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10191--10196 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2947] [2948] Underfull \hbox (badness 1205) in paragraph at lines 10275--10277 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10275--10277 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2949] [2950] [2951] Underfull \hbox (badness 1253) in paragraph at lines 10474--10476 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2952] [2953] [2954] [2955] [2956] Underfull \hbox (badness 4792) in paragraph at lines 10735--10738 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10735--10738 \T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2957] [2958] Underfull \hbox (badness 10000) in paragraph at lines 10842--10845 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1 0 "deviance"\T1/ptm/m/n/10 , [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] Underfull \vbox (badness 10000) has occurred while \output is active [2970] [2971] Underfull \hbox (badness 3861) in paragraph at lines 11628--11631 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2972] [2973] Underfull \hbox (badness 1320) in paragraph at lines 11743--11748 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2974] [2975] Underfull \hbox (badness 1975) in paragraph at lines 11849--11854 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2976] Underfull \hbox (badness 1762) in paragraph at lines 11938--11950 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2977] [2978] [2979] Underfull \vbox (badness 10000) has occurred while \output is active [2980] Underfull \hbox (badness 7667) in paragraph at lines 12150--12156 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2981] Underfull \hbox (badness 10000) in paragraph at lines 12191--12192 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2982] [2983] [2984] [2985] [2986] Underfull \hbox (badness 10000) in paragraph at lines 12467--12469 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2987] [2988] Underfull \hbox (badness 10000) in paragraph at lines 12597--12598 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2989] [2990] Underfull \hbox (badness 1436) in paragraph at lines 12735--12742 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one [2991] [2992] Underfull \hbox (badness 10000) in paragraph at lines 12830--12831 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2993] [2994] [2995] [2996] [2997] [2998] [2999] Underfull \vbox (badness 10000) has occurred while \output is active [3000] [3001] [3002] Underfull \hbox (badness 10000) in paragraph at lines 13429--13435 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13429--13435 \T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note [3003] [3004] [3005] Underfull \vbox (badness 10000) has occurred while \output is active [3006] Underfull \vbox (badness 10000) has occurred while \output is active [3007] [3008] Underfull \hbox (badness 10000) in paragraph at lines 13772--13773 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3009] [3010] [3011] [3012] Underfull \hbox (badness 3895) in paragraph at lines 14032--14035 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [3013] Underfull \hbox (badness 10000) in paragraph at lines 14077--14079 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3014] [3015] [3016] [3017] [3018] Underfull \hbox (badness 1371) in paragraph at lines 14351--14357 []\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see [3019] Underfull \hbox (badness 10000) in paragraph at lines 14391--14395 [][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 14391--14395 [][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 14391--14395 [][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/it/10 factor.smooth.interaction[][][] [3020] [3021] [3022] Underfull \hbox (badness 2326) in paragraph at lines 14596--14603 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and [3023] [3024] Underfull \hbox (badness 2158) in paragraph at lines 14681--14681 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] [3046] [3047] [3048] [3049] [3050] [3051] Underfull \hbox (badness 1796) in paragraph at lines 16339--16342 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060]) (./nlme-pkg.tex Chapter 25. [3061] [3062] [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] Underfull \hbox (badness 2875) in paragraph at lines 1996--2002 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1996--2002 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 , [3091] [3092] [3093] [3094] Underfull \hbox (badness 10000) in paragraph at lines 2258--2264 [][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] [3103] [3104] [3105] [3106] [3107] [3108] [3109pdfTeX warning (ext4): destination with the same iden tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor ed ...shipout:D \box_use:N \l_shipout_box l.3194 ] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] [3123] [3124] [3125] [3126] [3127] Underfull \hbox (badness 1067) in paragraph at lines 4419--4424 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] Underfull \hbox (badness 10000) in paragraph at lines 5165--5169 [][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3140] [3141] [3142] [3143] [3144] [3145] [3146] Underfull \hbox (badness 10000) in paragraph at lines 5597--5600 [][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3147] [3148] [3149] [3150] [3151] [3152] [3153] Underfull \hbox (badness 10000) in paragraph at lines 5978--5983 [][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3154] [3155] [3156] [3157] Underfull \hbox (badness 1490) in paragraph at lines 6248--6259 [][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3158] Underfull \hbox (badness 10000) in paragraph at lines 6312--6314 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3159] [3160] [3161] [3162] [3163] [3164] Underfull \hbox (badness 10000) in paragraph at lines 6726--6728 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3165] [3166] [3167] [3168] Underfull \hbox (badness 10000) in paragraph at lines 6999--7006 [][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3169] [3170] [3171] [3172] Underfull \hbox (badness 10000) in paragraph at lines 7259--7264 [][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3173] [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183] [3184] [3185] [3186] [3187] [3188] [3189] [3190] [3191] Underfull \hbox (badness 10000) in paragraph at lines 8527--8529 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3192]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8578 \aliasA{sigma}{lmeObject}{sigma} [3193] [3194] [3195] [3196] Underfull \hbox (badness 10000) in paragraph at lines 8808--8815 [][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] Underfull \hbox (badness 10000) in paragraph at lines 9330--9337 [][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3205] [3206] [3207] [3208] [3209]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221] Underfull \hbox (badness 1596) in paragraph at lines 10465--10491 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3222] [3223] Underfull \hbox (badness 1490) in paragraph at lines 10603--10609 [][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 , [3224] [3225] [3226] [3227] Underfull \hbox (badness 10000) in paragraph at lines 10844--10846 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3228] [3229] [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] Underfull \hbox (badness 1286) in paragraph at lines 13742--13749 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or [3270] [3271] [3272] [3273] [3274] [3275] [3276] [3277] Underfull \hbox (badness 1215) in paragraph at lines 14288--14290 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3278] [3279] [3280] [3281] [3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289] [3290]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300] Underfull \hbox (badness 3884) in paragraph at lines 15825--15829 []\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199 7). Phar-ma-coki- Underfull \hbox (badness 4846) in paragraph at lines 15825--15829 \T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap -pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol- Underfull \hbox (badness 1953) in paragraph at lines 15825--15829 \T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/ it/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 / 35925 / [3301] [3302] Underfull \hbox (badness 1067) in paragraph at lines 15937--15942 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3303] [3304] [3305] [3306] Underfull \hbox (badness 1448) in paragraph at lines 16180--16189 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] [3316] Underfull \hbox (badness 1728) in paragraph at lines 16885--16888 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3317] [3318] [3319] [3320] [3321] Underfull \hbox (badness 8056) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3322] [3323] [3324] [3325] [3326] Underfull \hbox (badness 10000) in paragraph at lines 17542--17550 [][][]\T1/zi4/m/it/10 varComb[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varCons tPower[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varConstProp[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/it/10 varExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varFi xed[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varIdent[][][]\T1/ptm/m/n/10 , [] []\T1/zi4/m/it/10 varPower[][][]\T1/ptm/m/n/10 , [3327] [3328] [3329] [3330] [3331] [3332] [3333] [3334] [3335] [3336] Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3337] [3338] [3339] [3340] [3341] Underfull \hbox (badness 5036) in paragraph at lines 18576--18585 [][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3342] [3343] [3344] [3345] [3346] [3347] [3348] [3349] [3350] [3351] [3352] [3353] [3354]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3355] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [3356] [3357] [3358] [3359] [3360] [3361] [3362]) (./rpart-pkg.tex Chapter 27. 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Myelogenous Leukemia survival data}{aml} [3419] [3420] [3421] [3422] Overfull \vbox (3.85637pt too high) has occurred while \output is active [3423] [3424] [3425] [3426] [3427] [3428] [3429] Underfull \hbox (badness 1097) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. 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It gives th e time range [3553] [3554] [3555] [3556] [3557] [3558] [3559] [3560] [3561] [3562] [3563] [3564] [3565] [3566] [3567] [3568] [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576]) No file fullrefman.ind. (./fullrefman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. Package rerunfilecheck Warning: File `fullrefman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information)pdfTeX warning (dest): name {Rfn.tree} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.viewports} has been referenced but does not exi st, replaced by a fixed one pdfTeX warning (dest): name{Rfn.xyplot.zoo} has been referenced but does not ex ist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipsePoints} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.ellipse} has been referenced but does not exist , replaced by a fixed one pdfTeX warning (dest): name{Rfn.cluster.stats} has been referenced but does not exist, replaced by a fixed one pdfTeX warning (dest): name{Rfn.chorizon} has been referenced but does not exis t, replaced by a fixed one pdfTeX warning (dest): name{Rfn.Sobj.Rul.SpatialGrid} has been referenced but d oes not exist, 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[3] [4] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [6] [7] Underfull \hbox (badness 1178) in paragraph at lines 322--325 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 561--567 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] [13] (/usr/share/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 2671) in paragraph at lines 1209--1212 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [21] [22] (/usr/share/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1532--1538 [25] [26] [27] [28] [29] [30] [31] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2008--2008 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [32] [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2446--2448 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2449--2454 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2449--2454 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \vbox (badness 10000) has occurred while \output is active [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 3836--3838 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 4077--4077 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 5115--5117 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6290--6290 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [93] [94] [95] [96] [97] [98] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6754--6756 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [99] [100] Underfull \hbox (badness 10000) in paragraph at lines 6919--6922 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [101] [102] [103] Underfull \hbox (badness 6063) in paragraph at lines 7101--7107 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7101--7107 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7101--7107 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7101--7107 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or Underfull \hbox (badness 1303) in paragraph at lines 7163--7170 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the [104] Underfull \hbox (badness 2111) in paragraph at lines 7174--7179 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] Underfull \hbox (badness 1077) in paragraph at lines 7492--7498 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7492--7498 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [109] [110] [111] [112] [113] Underfull \hbox (badness 2096) in paragraph at lines 7834--7838 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [114] [115] Underfull \hbox (badness 2351) in paragraph at lines 7952--7955 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [116] [117] [118] [119] [120] Underfull \hbox (badness 4479) in paragraph at lines 8281--8292 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [121] [122] [123] [124] [125] [126] Underfull \hbox (badness 1629) in paragraph at lines 8730--8742 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8730--8742 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8730--8742 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 1178) in paragraph at lines 9486--9490 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] Underfull \hbox (badness 6396) in paragraph at lines 11103--11111 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11103--11111 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 4569) in paragraph at lines 12221--12225 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12221--12225 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] Underfull \hbox (badness 2253) in paragraph at lines 13896--13898 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [199] Underfull \hbox (badness 1565) in paragraph at lines 13969--13973 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [200] Underfull \hbox (badness 4927) in paragraph at lines 14013--14015 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [201] Underfull \hbox (badness 3148) in paragraph at lines 14115--14120 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [202] Underfull \hbox (badness 1466) in paragraph at lines 14162--14165 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [203] [204] Underfull \hbox (badness 10000) in paragraph at lines 14289--14293 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14300--14303 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [205] [206] [207] [208] Underfull \hbox (badness 3965) in paragraph at lines 14594--14598 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] Underfull \hbox (badness 4429) in paragraph at lines 15372--15375 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [221] Underfull \hbox (badness 10000) in paragraph at lines 15478--15480 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15478--15480 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see Underfull \hbox (badness 10000) in paragraph at lines 15500--15505 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15500--15505 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15512--15516 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15512--15516 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want [222] Underfull \hbox (badness 2035) in paragraph at lines 15551--15555 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [223] Underfull \vbox (badness 10000) has occurred while \output is active [224] [225] [226] [227] [228] [229] [230] [231] Underfull \hbox (badness 2452) in paragraph at lines 16151--16155 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16151--16155 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [232] [233] Underfull \hbox (badness 1092) in paragraph at lines 16324--16329 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [234] [235] [236] [237] Underfull \hbox (badness 6741) in paragraph at lines 16577--16581 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [238] [239] [240] [241] [242] [243] [244] [245] [246] Underfull \vbox (badness 10000) has occurred while \output is active [247] [248] [249] [250] [251] [252] [253] [254] [255] Underfull \hbox (badness 1478) in paragraph at lines 17899--17902 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [256] [257] [258] [259] Underfull \hbox (badness 10000) in paragraph at lines 18159--18161 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / [260] [261] [262] [263] [264] [265] [266] [267] Underfull \hbox (badness 1442) in paragraph at lines 18759--18761 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [268] [269] [270] [271] [272] Underfull \hbox (badness 10000) in paragraph at lines 19090--19096 [273] [274] [275] Underfull \hbox (badness 1248) in paragraph at lines 19335--19338 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [276] [277] [278] [279] [280] Underfull \hbox (badness 4739) in paragraph at lines 19598--19600 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [281] [282] [283] Underfull \hbox (badness 1603) in paragraph at lines 19825--19828 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [284] [285] [286] Underfull \hbox (badness 1596) in paragraph at lines 20017--20022 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [287] [288] [289] [290] [291] [292] [293] [294] [295] Underfull \hbox (badness 2469) in paragraph at lines 20622--20627 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [296] Underfull \hbox (badness 10000) in paragraph at lines 20710--20714 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20710--20714 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [297] [298] [299] Underfull \hbox (badness 1014) in paragraph at lines 20880--20885 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] Underfull \hbox (badness 1264) in paragraph at lines 21729--21734 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: Underfull \hbox (badness 4441) in paragraph at lines 21758--21761 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] [322] Underfull \hbox (badness 6047) in paragraph at lines 22505--22507 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] Underfull \hbox (badness 10000) in paragraph at lines 23575--23581 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23575--23581 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [339] [340] [341] [342] [343] [344] [345] [346] Underfull \hbox (badness 2790) in paragraph at lines 24076--24079 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24076--24079 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [347] [348] [349] [350] Underfull \hbox (badness 1194) in paragraph at lines 24362--24365 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [351] [352] Underfull \hbox (badness 2368) in paragraph at lines 24569--24575 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24569--24575 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [353] [354] [355] [356] [357] [358] Underfull \hbox (badness 10000) in paragraph at lines 24952--24955 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [359] [360] [361] [362] [363] [364] [365] [366] [367] Underfull \hbox (badness 10000) in paragraph at lines 25569--25571 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] Underfull \hbox (badness 1038) in paragraph at lines 26414--26422 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26414--26422 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26414--26422 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26423--26426 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 26447--26449 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [380] [381] Underfull \hbox (badness 2142) in paragraph at lines 26588--26592 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 26645--26650 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [382] [383] [384] Underfull \hbox (badness 10000) in paragraph at lines 26937--26943 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 26937--26943 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 26937--26943 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 26950--26953 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [385] Underfull \hbox (badness 2689) in paragraph at lines 26976--26978 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 27011--27016 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27017--27028 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27017--27028 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 27029--27032 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [386] [387] [388] [389] [390] [391] [392] [393] Underfull \hbox (badness 10000) in paragraph at lines 27576--27579 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [394] Underfull \hbox (badness 7925) in paragraph at lines 27656--27660 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27656--27660 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27661--27670 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [395] [396] [397] Underfull \hbox (badness 1237) in paragraph at lines 27941--27945 []\T1/ptm/m/n/10 On most builds of \T1/phv/m/n/10 R \T1/ptm/m/n/10 a lead-ing \ T1/zi4/m/n/10 ~user \T1/ptm/m/n/10 will ex-pand to the home di-rec- [398] [399] [400] [401] [402] [403] [404] [405] [406] Underfull \hbox (badness 2726) in paragraph at lines 28534--28537 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] Underfull \hbox (badness 1603) in paragraph at lines 29284--29287 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [419] [420] [421] [422] [423] [424] Underfull \vbox (badness 10000) has occurred while \output is active [425] [426] [427] [428] [429] [430] [431] Underfull \hbox (badness 1533) in paragraph at lines 30279--30282 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [432] [433] [434] Underfull \hbox (badness 1163) in paragraph at lines 30442--30453 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] Underfull \hbox (badness 10000) in paragraph at lines 32026--32030 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32026--32030 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 32047--32049 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32050--32054 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tps : / / www . pcre . org / [458] [459] [460] [461] [462] [463] [464] [465] Underfull \hbox (badness 1655) in paragraph at lines 32605--32607 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] Underfull \hbox (badness 2261) in paragraph at lines 33793--33798 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [483] Underfull \hbox (badness 10000) in paragraph at lines 33820--33826 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 33820--33826 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] Underfull \hbox (badness 10000) in paragraph at lines 36419--36421 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [520] [521] [522] [523] [524] [525] [526] [527] [528] Underfull \hbox (badness 1072) in paragraph at lines 37016--37020 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 37021--37025 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 37051--37057 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 37051--37057 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 37051--37057 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 37063--37070 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 37063--37070 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 37063--37070 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 37063--37070 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [529] [530] [531] [532] Underfull \hbox (badness 2644) in paragraph at lines 37295--37299 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [533] [534] Underfull \hbox (badness 1142) in paragraph at lines 37447--37453 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] Underfull \hbox (badness 1565) in paragraph at lines 38724--38726 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [553] [554] [555] [556] [557] [558] [559] [560] [561] Underfull \hbox (badness 1137) in paragraph at lines 39314--39320 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39333--39338 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [562] [563] Underfull \hbox (badness 1616) in paragraph at lines 39446--39451 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [564] [565] [566] [567] [568] [569] [570] [571] Underfull \hbox (badness 1472) in paragraph at lines 39979--39982 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] Underfull \hbox (badness 10000) in paragraph at lines 40898--40902 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [585] [586] [587] [588] Underfull \hbox (badness 10000) in paragraph at lines 41149--41152 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [589] [590] [591] Underfull \hbox (badness 10000) in paragraph at lines 41333--41337 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [592] [593] [594] [595] [596] [597] [598] [599] Underfull \hbox (badness 10000) in paragraph at lines 41956--41959 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] [612] Underfull \hbox (badness 1990) in paragraph at lines 42878--42886 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 42878--42886 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [613] [614] [615] [616] [617] [618] [619] [620] Underfull \hbox (badness 1917) in paragraph at lines 43383--43390 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [621] [622] [623] [624] [625] [626] Underfull \hbox (badness 2452) in paragraph at lines 43835--43841 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [627] [628] [629] [630] [631] [632] Underfull \hbox (badness 3668) in paragraph at lines 44209--44211 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [633] Underfull \hbox (badness 2401) in paragraph at lines 44339--44343 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [634] [635] [636] Underfull \hbox (badness 2111) in paragraph at lines 44528--44533 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 44549--44554 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [637] [638] [639] [640] Underfull \hbox (badness 4001) in paragraph at lines 44774--44776 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [641] [642] [643] [644] [645] Underfull \hbox (badness 5417) in paragraph at lines 45137--45141 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [646] Underfull \hbox (badness 10000) in paragraph at lines 45198--45202 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [647]) (./compiler-pkg.tex [648] Chapter 2. [649] [650] [651] [652]) (./datasets-pkg.tex Chapter 3. [653] [654] [655] [656] [657] [658] Underfull \vbox (badness 1472) has occurred while \output is active [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] Overfull \vbox (4.26088pt too high) has occurred while \output is active [690] [691] [692] [693] [694] [695] Overfull \vbox (13.87083pt too high) has occurred while \output is active [696] Underfull \vbox (badness 2376) has occurred while \output is active [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] Overfull \vbox (10.49593pt too high) has occurred while \output is active [713] Overfull \vbox (15.49593pt too high) has occurred while \output is active [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728]) (./grDevices-pkg.tex Chapter 4. [729] [730] [731] [732] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [733] [734] [735] [736] [737] [738] [739] [740] [741] Underfull \hbox (badness 1424) in paragraph at lines 895--897 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [742] [743] [744] [745] [746] Underfull \hbox (badness 5175) in paragraph at lines 1189--1191 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [747] [748] Underfull \hbox (badness 2512) in paragraph at lines 1308--1310 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [749] Underfull \hbox (badness 1852) in paragraph at lines 1402--1405 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [750] [751] [752] Underfull \hbox (badness 1490) in paragraph at lines 1608--1613 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [753] [754] [755] [756] [757] [758] Underfull \hbox (badness 1325) in paragraph at lines 2014--2024 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [759] Underfull \hbox (badness 10000) in paragraph at lines 2126--2128 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [760] [761] [762] Underfull \hbox (badness 6758) in paragraph at lines 2305--2308 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [763] [764] [765] [766] [767] [768] [769] [770] [771] Underfull \hbox (badness 10000) in paragraph at lines 2914--2915 Underfull \vbox (badness 10000) has occurred while \output is active [772] [773] [774] [775] [776] [777] [778] [779] Underfull \hbox (badness 10000) in paragraph at lines 3488--3493 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [780] [781] [782] [783] [784] [785] [786] Underfull \vbox (badness 10000) has occurred while \output is active [787] Underfull \hbox (badness 10000) in paragraph at lines 3987--3990 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] Underfull \hbox (badness 10000) in paragraph at lines 4724--4729 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 10000) in paragraph at lines 4724--4729 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte nt / dam / acom / en / devnet / acrobat / pdfs / pdf _ Underfull \hbox (badness 1881) in paragraph at lines 4724--4729 \T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc -tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac . [798] Underfull \vbox (badness 10000) has occurred while \output is active [799] [800] Underfull \hbox (badness 1584) in paragraph at lines 4880--4882 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4884--4891 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [801] [802] [803] [804] Underfull \hbox (badness 1377) in paragraph at lines 5190--5195 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [805] Underfull \hbox (badness 1418) in paragraph at lines 5266--5273 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5284--5286 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [806] Underfull \hbox (badness 1377) in paragraph at lines 5395--5400 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [807] Underfull \hbox (badness 7344) in paragraph at lines 5464--5466 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [808] [809] Underfull \hbox (badness 2035) in paragraph at lines 5602--5611 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5602--5611 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5602--5611 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [810] [811] Underfull \hbox (badness 10000) in paragraph at lines 5670--5677 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5670--5677 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [812] [813] Underfull \hbox (badness 1546) in paragraph at lines 5812--5820 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [814] [815] [816] [817] [818] [819] [820] [821] Underfull \hbox (badness 10000) in paragraph at lines 6350--6353 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] [832] [833] Underfull \hbox (badness 1189) in paragraph at lines 7175--7177 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [834] Underfull \hbox (badness 10000) in paragraph at lines 7280--7282 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [835] [836] [837] [838] [839] Underfull \hbox (badness 3780) in paragraph at lines 7594--7600 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [840] [841] Underfull \hbox (badness 2680) in paragraph at lines 7796--7798 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [842] [843] [844]) (./graphics-pkg.tex Chapter 5. [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] Underfull \vbox (badness 10000) has occurred while \output is active [860] [861] [862] [863] [864] [865] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] Underfull \hbox (badness 1728) in paragraph at lines 2328--2330 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [881] Underfull \hbox (badness 1009) in paragraph at lines 2421--2428 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] Underfull \vbox (badness 10000) has occurred while \output is active [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] Underfull \hbox (badness 3229) in paragraph at lines 4596--4601 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [915] [916] [917] [918] Underfull \hbox (badness 10000) in paragraph at lines 5026--5032 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5026--5032 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [919] [920] Underfull \hbox (badness 10000) in paragraph at lines 5157--5160 [921 ] Underfull \hbox (badness 10000) in paragraph at lines 5218--5220 [922 ] [923] Underfull \hbox (badness 10000) in paragraph at lines 5408--5410 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [924] [925] [926] [927] [928] [929] [930] [931]pdfTeX warning (ext4): destinati on with the same identifier (name{Rfn.plot}) has been already used, duplicate i gnored \relax l.5890 \aliasA{plot}{plot.default}{plot} [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6795--6796 [][] [945 ] [946] Underfull \vbox (badness 10000) has occurred while \output is active [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] Underfull \hbox (badness 2012) in paragraph at lines 7620--7623 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] Underfull \hbox (badness 10000) in paragraph at lines 8886--8888 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8888--8890 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [977]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8968 \HeaderA{units}{Graphical Units}{units} [978] [979] [980] [981]) (./grid-pkg.tex [982] Chapter 6. [983] [984] [985] [986] [987] [988] [989] [990] Underfull \hbox (badness 2680) in paragraph at lines 483--486 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [991] [992] [993] [994] [995] [996] [997] [998] [999] Underfull \hbox (badness 4279) in paragraph at lines 1064--1073 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] Underfull \vbox (badness 10000) has occurred while \output is active [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] Underfull \hbox (badness 1067) in paragraph at lines 4489--4492 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1053] [1054] [1055] [1056] Underfull \hbox (badness 7256) in paragraph at lines 4734--4736 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] Underfull \hbox (badness 1824) in paragraph at lines 6606--6609 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1086] [1087] [1088] [1089]) (./methods-pkg.tex [1090] Chapter 7. [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] Underfull \vbox (badness 10000) has occurred while \output is active [1099] Underfull \vbox (badness 10000) has occurred while \output is active [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1117] [1118] [1119] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1120] [1121] [1122] [1123] [1124] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1125] [1126] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1127] [1128] [1129] [1130] [1131] [1132] [1133] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1134] [1135] [1136] [1137] [1138] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1139] [1140] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] Underfull \vbox (badness 10000) has occurred while \output is active [1159] Underfull \vbox (badness 10000) has occurred while \output is active [1160] [1161] [1162] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1163] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1164] [1165] [1166] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1175] [1176] [1177] [1178] Underfull \vbox (badness 10000) has occurred while \output is active [1179] [1180] [1181]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1182] [1183] [1184]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1185] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1186] [1187] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1221] [1222] [1223] [1224] [1225] [1226] [1227] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1228] [1229] [1230]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] Underfull \hbox (badness 3386) in paragraph at lines 1393--1396 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1251] [1252] [1253]) (./splines-pkg.tex [1254] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268]) (./stats-pkg.tex Chapter 10. [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1289] [1290] [1291] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] Underfull \hbox (badness 2503) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] Underfull \hbox (badness 1127) in paragraph at lines 4430--4433 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1334] [1335] [1336] [1337] [1338] Underfull \hbox (badness 3989) in paragraph at lines 4770--4777 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] Underfull \hbox (badness 2556) in paragraph at lines 5406--5409 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5423--5425 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1348] [1349] [1350] [1351] [1352] [1353] Underfull \hbox (badness 2503) in paragraph at lines 5820--5824 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] Underfull \hbox (badness 7081) in paragraph at lines 6614--6617 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6618--6620 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] Underfull \hbox (badness 10000) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] Underfull \vbox (badness 10000) has occurred while \output is active [1400] [1401] [1402] [1403] Underfull \hbox (badness 2626) in paragraph at lines 9144--9147 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1404] [1405] Underfull \hbox (badness 2503) in paragraph at lines 9251--9255 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] Underfull \hbox (badness 4518) in paragraph at lines 10587--10592 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1425] [1426] [1427] [1428] [1429] Underfull \hbox (badness 2142) in paragraph at lines 10948--10951 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10967--10970 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1430] Underfull \hbox (badness 1708) in paragraph at lines 11029--11033 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1431] [1432] [1433] [1434] [1435] Underfull \hbox (badness 1694) in paragraph at lines 11425--11428 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11909 \aliasA{hat}{influence.measures}{hat} [1444] [1445] Underfull \hbox (badness 1484) in paragraph at lines 12051--12053 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] Underfull \hbox (badness 10000) in paragraph at lines 12649--12651 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1455] [1456] [1457] [1458] [1459] Underfull \hbox (badness 2894) in paragraph at lines 12985--12989 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] Underfull \hbox (badness 4518) in paragraph at lines 13736--13741 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] Underfull \hbox (badness 4518) in paragraph at lines 14389--14394 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1481] [1482] Underfull \hbox (badness 8151) in paragraph at lines 14527--14531 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14534--14536 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] Underfull \hbox (badness 2503) in paragraph at lines 15607--15611 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1500] [1501] [1502] [1503] [1504] [1505] [1506] Underfull \hbox (badness 4621) in paragraph at lines 16120--16126 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/ ptm/m/n/10 and [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] Underfull \vbox (badness 10000) has occurred while \output is active [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] Underfull \hbox (badness 1377) in paragraph at lines 18731--18736 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18736--18739 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18749--18753 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18749--18753 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to [1547] Underfull \hbox (badness 2662) in paragraph at lines 18757--18761 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1548] [1549] Underfull \vbox (badness 10000) has occurred while \output is active [1550] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18982--18982 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18985--18985 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1551] [1552] [1553] [1554] [1555] [1556] [1557] Underfull \hbox (badness 1337) in paragraph at lines 19444--19447 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] Underfull \hbox (badness 3049) in paragraph at lines 19942--19946 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1566] [1567] [1568] [1569] Underfull \hbox (badness 1194) in paragraph at lines 20205--20208 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1570] [1571] [1572] [1573] [1574] [1575] [1576] Underfull \hbox (badness 2503) in paragraph at lines 20584--20587 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20611--20613 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] Underfull \hbox (badness 10000) in paragraph at lines 21689--21695 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] Underfull \hbox (badness 1337) in paragraph at lines 23046--23052 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 10000) in paragraph at lines 23609--23610 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1622] [1623] [1624] [1625] [1626] Underfull \hbox (badness 10000) in paragraph at lines 23882--23885 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23882--23885 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1627] [1628] [1629] [1630] [1631] [1632] [1633] [1634] Underfull \hbox (badness 1824) in paragraph at lines 24468--24474 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24468--24474 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1635] Underfull \hbox (badness 10000) in paragraph at lines 24489--24492 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = Underfull \hbox (badness 3690) in paragraph at lines 24558--24562 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1636] [1637] [1638] [1639] [1640] [1641] [1642] Underfull \vbox (badness 10000) has occurred while \output is active [1643] [1644] Underfull \hbox (badness 2165) in paragraph at lines 25067--25072 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1645] [1646] [1647] Underfull \hbox (badness 1867) in paragraph at lines 25272--25274 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25287--25291 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] Underfull \vbox (badness 10000) has occurred while \output is active [1670] Underfull \hbox (badness 3514) in paragraph at lines 26850--26855 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1671] [1672] [1673] [1674] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27084--27084 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1675] Underfull \hbox (badness 3514) in paragraph at lines 27120--27126 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1676] [1677] [1678] Underfull \hbox (badness 3514) in paragraph at lines 27334--27339 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1679] [1680] Underfull \hbox (badness 3514) in paragraph at lines 27421--27426 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1681] Underfull \hbox (badness 3514) in paragraph at lines 27486--27491 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1682] Underfull \hbox (badness 3514) in paragraph at lines 27580--27585 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1683] [1684] Underfull \hbox (badness 6691) in paragraph at lines 27672--27677 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1685] [1686] [1687] [1688] [1689] [1690] [1691] [1692] Underfull \hbox (badness 4024) in paragraph at lines 28202--28205 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] Underfull \hbox (badness 5431) in paragraph at lines 28808--28810 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1702] [1703] [1704] [1705] Underfull \hbox (badness 5431) in paragraph at lines 29018--29021 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1706] [1707] [1708] [1709] [1710] Underfull \hbox (badness 1337) in paragraph at lines 29333--29337 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1711] [1712] [1713] [1714] Underfull \hbox (badness 1616) in paragraph at lines 29645--29648 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 3557) in paragraph at lines 30779--30783 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1733] [1734] Underfull \vbox (badness 10000) has occurred while \output is active [1735] [1736] [1737] Underfull \hbox (badness 1337) in paragraph at lines 31143--31147 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] Underfull \hbox (badness 1337) in paragraph at lines 31672--31676 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31686--31688 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1746] [1747] [1748] Overfull \hbox (0.71648pt too wide) in paragraph at lines 31879--31879 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1749] [1750] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32040--32040 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1751] [1752] [1753] [1754] [1755]) (./stats4-pkg.tex [1756] Chapter 11. [1757] [1758] [1759] Underfull \vbox (badness 10000) has occurred while \output is active [1760] [1761] [1762] [1763] [1764]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1765] [1766] [1767]) (./tcltk-pkg.tex [1768] Chapter 12. [1769] [1770] [1771] [1772] [1773] [1774] [1775] Underfull \vbox (badness 10000) has occurred while \output is active [1776] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788]) (./tools-pkg.tex Chapter 13. [1789] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1790] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1791] [1792] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1793] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1794] [1795] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1796] [1797] [1798] [1799] [1800] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1801] [1802] [1803] [1804] [1805] Underfull \hbox (badness 4441) in paragraph at lines 1150--1160 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1806] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1807] [1808] [1809] [1810] [1811] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1812] [1813] Underfull \hbox (badness 7981) in paragraph at lines 1707--1712 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1814] Underfull \hbox (badness 1082) in paragraph at lines 1714--1716 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1815] [1816] [1817]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1911 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1818] [1819] [1820] [1821] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2213--2213 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1822] [1823] [1824] Underfull \hbox (badness 7981) in paragraph at lines 2382--2388 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1825] [1826] [1827] [1828] [1829] [1830] [1831] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2866. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2867. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2867. [1832] [1833] [1834] [1835] Underfull \hbox (badness 1424) in paragraph at lines 3150--3152 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] Underfull \hbox (badness 10000) in paragraph at lines 3851--3853 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1847] [1848] Underfull \hbox (badness 10000) in paragraph at lines 3990--3993 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1849] Underfull \hbox (badness 1137) in paragraph at lines 4092--4094 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1850] [1851] [1852] [1853] [1854] Underfull \hbox (badness 1796) in paragraph at lines 4400--4405 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [1855] Underfull \hbox (badness 1838) in paragraph at lines 4474--4480 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4474--4480 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1856] [1857] [1858] [1859] Underfull \hbox (badness 2197) in paragraph at lines 4749--4759 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [1860] Underfull \hbox (badness 1571) in paragraph at lines 4812--4816 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1861] [1862] [1863]) (./utils-pkg.tex [1864] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [1865] [1866] [1867] [1868] [1869] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 10000) in paragraph at lines 719--725 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 719--725 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1875] [1876] Underfull \hbox (badness 5847) in paragraph at lines 855--861 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 855--861 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1877] Underfull \hbox (badness 3861) in paragraph at lines 923--928 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1878] [1879] [1880] Underfull \hbox (badness 3323) in paragraph at lines 1094--1102 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1881] [1882] [1883] [1884] [1885] [1886] [1887] Underfull \hbox (badness 1371) in paragraph at lines 1611--1613 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1888] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1681. [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] Underfull \hbox (badness 2057) in paragraph at lines 2224--2226 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1897] [1898] [1899] [1900] [1901]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2575 ... the Clipboard in MS Windows}{clipboard} [1902] [1903] Underfull \hbox (badness 1748) in paragraph at lines 2742--2745 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1904] [1905] [1906] [1907] [1908] [1909] Underfull \hbox (badness 5388) in paragraph at lines 3151--3155 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3156--3159 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] Underfull \hbox (badness 1430) in paragraph at lines 3935--3943 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1921] Underfull \hbox (badness 1231) in paragraph at lines 4012--4024 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1922] [1923] Underfull \hbox (badness 10000) in paragraph at lines 4170--4172 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4868 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4868 ...mat Unordered and Ordered Lists}{format} [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 1622) in paragraph at lines 5387--5391 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6105. Underfull \hbox (badness 1371) in paragraph at lines 6109--6111 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1953] [1954] Underfull \hbox (badness 1502) in paragraph at lines 6198--6203 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6198--6203 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1955] [1956] Underfull \hbox (badness 10000) in paragraph at lines 6371--6380 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1957] Underfull \hbox (badness 2150) in paragraph at lines 6435--6438 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1958] [1959] Underfull \hbox (badness 3118) in paragraph at lines 6573--6575 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1960] [1961] Underfull \hbox (badness 1325) in paragraph at lines 6751--6755 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6763--6769 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1962] Underfull \hbox (badness 10000) in paragraph at lines 6835--6838 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6835--6838 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6843--6846 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [1963] Underfull \hbox (badness 3219) in paragraph at lines 6914--6921 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6914--6921 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6914--6921 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 6914--6921 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 6922--6925 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1964] [1965] Underfull \hbox (badness 1546) in paragraph at lines 7048--7051 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will Underfull \hbox (badness 10000) in paragraph at lines 7081--7086 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] Underfull \hbox (badness 10000) in paragraph at lines 7868--7870 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] Underfull \vbox (badness 10000) has occurred while \output is active [1986] [1987] [1988] [1989] Underfull \hbox (badness 10000) in paragraph at lines 8606--8608 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8628--8633 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1990] [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 1248) in paragraph at lines 9154--9158 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [1997] Underfull \hbox (badness 1789) in paragraph at lines 9232--9234 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] Underfull \vbox (badness 5533) has occurred while \output is active [2007] [2008] [2009] Underfull \hbox (badness 1097) in paragraph at lines 10069--10072 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2010] [2011] Underfull \hbox (badness 3000) in paragraph at lines 10205--10210 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] Underfull \hbox (badness 2134) in paragraph at lines 10787--10792 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2020] Underfull \hbox (badness 10000) in paragraph at lines 10843--10848 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10843--10848 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2021] [2022] [2023] [2024] [2025] [2026] [2027] Underfull \hbox (badness 2469) in paragraph at lines 11337--11341 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11337--11341 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2028] [2029] [2030] [2031] [2032] [2033] Underfull \hbox (badness 4060) in paragraph at lines 11753--11756 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2034] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11776--11776 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2035] [2036] [2037] Underfull \hbox (badness 2150) in paragraph at lines 12015--12017 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2038] [2039] [2040] [2041] Underfull \hbox (badness 10000) in paragraph at lines 12234--12238 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12265--12271 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2042] [2043] Underfull \hbox (badness 1009) in paragraph at lines 12459--12471 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2044] Underfull \hbox (badness 4779) in paragraph at lines 12499--12501 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12529--12536 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2045] [2046] [2047] [2048] [2049] [2050] Underfull \hbox (badness 3780) in paragraph at lines 12937--12941 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 12953--12956 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2051] [2052] [2053] Underfull \hbox (badness 2302) in paragraph at lines 13158--13160 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2054] [2055] [2056] [2057] [2058] Underfull \hbox (badness 10000) in paragraph at lines 13456--13461 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13465--13468 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2059] Underfull \vbox (badness 10000) has occurred while \output is active [2060] [2061] [2062] [2063] [2064] Underfull \hbox (badness 2932) in paragraph at lines 13889--13896 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 13889--13896 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2065] [2066] [2067] [2068] Underfull \hbox (badness 6510) in paragraph at lines 14198--14202 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14205--14208 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14205--14208 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2069] [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] Underfull \hbox (badness 10000) in paragraph at lines 14871--14876 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 14871--14876 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and [2078] Underfull \hbox (badness 1052) in paragraph at lines 14877--14879 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 14936--14939 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] [2089] [2090] Underfull \hbox (badness 10000) in paragraph at lines 15709--15711 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2091] [2092] [2093]) [2094] [2095] [2096] (./KernSmooth-pkg.tex Chapter 15. [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106]) (./MASS-pkg.tex Chapter 16. [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] Underfull \hbox (badness 7944) in paragraph at lines 2703--2706 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2144] [2145] [2146] Underfull \hbox (badness 10000) in paragraph at lines 2873--2878 \T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative [2147] [2148] Underfull \hbox (badness 4686) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] Underfull \hbox (badness 1117) in paragraph at lines 4802--4805 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2174] Underfull \hbox (badness 1117) in paragraph at lines 4880--4883 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] Underfull \hbox (badness 1117) in paragraph at lines 7117--7124 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2205] Underfull \hbox (badness 3138) in paragraph at lines 7188--7194 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2206] [2207] [2208] Underfull \hbox (badness 6775) in paragraph at lines 7367--7370 \T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] Underfull \hbox (badness 4686) in paragraph at lines 8000--8002 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2255] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2256] [2257] [2258] [2259] Underfull \hbox (badness 5119) in paragraph at lines 509--513 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2260] [2261] Underfull \hbox (badness 2418) in paragraph at lines 605--608 []\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2262] [2263] Underfull \hbox (badness 1701) in paragraph at lines 758--762 []\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t ion; [][]$\T1/zi4/m/it/10 https : / / www . netlib . org / [2264] [2265] [2266] [2267] Underfull \hbox (badness 10000) in paragraph at lines 1048--1050 []\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/it/10 to = [2268] [2269]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1160 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1160 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1218--1224 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2270pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol ,dsCMatrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.1249 \item[chol] \code{signature(x = "dsCMatrix", pivot = "logical")}:pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.R dash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.1249 \item[chol] \code{signature(x = "dsCMatrix", pivot = "logical")}:pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.R dash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.1249 \item[chol] \code{signature(x = "dsCMatrix", pivot = "logical")}:] [2271] [2272] Underfull \hbox (badness 2277) in paragraph at lines 1418--1421 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2273] [2274] Underfull \hbox (badness 1097) in paragraph at lines 1590--1593 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1596--1600 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2275]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1653 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1653 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1654 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1675 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1686 \aliasA{rowSums}{colSums}{rowSums} [2276] [2277] [2278] Underfull \hbox (badness 3547) in paragraph at lines 1905--1908 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2279] [2280] [2281] [2282] [2283] Underfull \hbox (badness 1360) in paragraph at lines 2328--2332 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2284] [2285] [2286] [2287] Underfull \hbox (badness 2717) in paragraph at lines 2644--2648 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2288] [2289] Underfull \hbox (badness 6842) in paragraph at lines 2734--2737 []\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2290] Underfull \hbox (badness 10000) in paragraph at lines 3021--3025 []\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2291] [2292] [2293] Underfull \hbox (badness 1173) in paragraph at lines 3231--3233 []\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3278--3280 [][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2294] [2295] Underfull \hbox (badness 1354) in paragraph at lines 3477--3480 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2296] [2297] [2298] [2299] [2300] Underfull \hbox (badness 6188) in paragraph at lines 3887--3890 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3890--3893 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = [2301] [2302] Underfull \hbox (badness 2318) in paragraph at lines 4004--4008 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/it/10 "dMatrix"\T1/ptm/m/n/10 , [2303] [2304] Underfull \hbox (badness 5245) in paragraph at lines 4140--4144 []\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/it/10 determinant[][][](x) [2305] [2306] [2307] [2308] [2309] [2310] Overfull \hbox (8.27782pt too wide) in paragraph at lines 4562--4562 [] \T1/zi4/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB /Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4565--4565 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2311] [2312] Underfull \hbox (badness 1931) in paragraph at lines 4797--4799 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2313] [2314] [2315] [2316] [2317] Underfull \hbox (badness 1005) in paragraph at lines 5103--5108 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5103--5108 \T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5122--5125 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2318] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5170--5170 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2319] Underfull \hbox (badness 3229) in paragraph at lines 5271--5280 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the [2320] Underfull \hbox (badness 10000) in paragraph at lines 5313--5315 []\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 4995) in paragraph at lines 5318--5321 []\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5328--5331 []\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2321] [2322] [2323] [2324] [2325] Underfull \hbox (badness 1014) in paragraph at lines 5707--5710 []\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2326] [2327] [2328] [2329] Underfull \hbox (badness 10000) in paragraph at lines 6022--6025 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2330] Underfull \hbox (badness 2478) in paragraph at lines 6134--6139 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2331] Underfull \hbox (badness 10000) in paragraph at lines 6142--6145 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2332] Underfull \hbox (badness 10000) in paragraph at lines 6334--6337 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2333] Underfull \hbox (badness 10000) in paragraph at lines 6432--6435 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2334] Underfull \hbox (badness 10000) in paragraph at lines 6507--6510 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2335] Underfull \hbox (badness 2050) in paragraph at lines 6583--6586 []\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2336] [2337] [2338] [2339] [2340] Underfull \hbox (badness 6268) in paragraph at lines 6896--6900 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2341]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6995 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 7088--7090 []\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode [2342] Underfull \hbox (badness 4846) in paragraph at lines 7093--7096 []\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 7098--7101 [2343]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7171 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7279 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7379 ...tcrossprod}{matrix-products}{tcrossprod} [2344pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.7536 \code{boolArith = TRUE} for regular (``non cross'') matrixpdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrossprod.Rdash.method s}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.7536 \code{boolArith = TRUE} for regular (``non cross'') matrix] Underfull \hbox (badness 10000) in paragraph at lines 7553--7558 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7553--7558 \T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7562--7564 []\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7564--7566 []\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7568--7569 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2345] [2346] Underfull \hbox (badness 1430) in paragraph at lines 7712--7717 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2347] Underfull \hbox (badness 10000) in paragraph at lines 7783--7786 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2348] Underfull \hbox (badness 10000) in paragraph at lines 7839--7841 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X [2349] [2350] Underfull \vbox (badness 10000) has occurred while \output is active [2351] Underfull \hbox (badness 2478) in paragraph at lines 8046--8051 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 8054--8057 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2352] [2353] Underfull \hbox (badness 5924) in paragraph at lines 8248--8250 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2354]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8288 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8288 \HeaderA{norm}{Matrix Norms}{norm} [2355] [2356] Underfull \hbox (badness 10000) in paragraph at lines 8561--8564 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2357] Underfull \hbox (badness 10000) in paragraph at lines 8651--8654 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2358] Underfull \hbox (badness 10000) in paragraph at lines 8727--8730 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2359] Underfull \vbox (badness 10000) has occurred while \output is active [2360] Underfull \hbox (badness 10000) in paragraph at lines 8853--8855 []\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8858--8861 []\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2361] [2362] [2363] [2364]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.9090 \aliasA{qr}{qr-methods}{qr} [2365] [2366] [2367] [2368]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9418 ... the Reciprocal Condition Number}{rcond} [2369] [2370] [2371] [2372] [2373] Underfull \hbox (badness 2351) in paragraph at lines 9722--9730 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9722--9730 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9722--9730 \T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 , [2374] [2375] [2376] [2377]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9995 \aliasA{solve}{solve-methods}{solve} [2378] Underfull \hbox (badness 10000) in paragraph at lines 10158--10165 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse = [2379] Underfull \hbox (badness 4403) in paragraph at lines 10219--10222 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10289--10292 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2380] Underfull \hbox (badness 10000) in paragraph at lines 10325--10328 []\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10336--10340 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2381] [2382] [2383] [2384] [2385] [2386] [2387] [2388] Underfull \hbox (badness 10000) in paragraph at lines 10917--10925 []\T1/zi4/m/it/10 (object = "sparseMatrix",uniqT=FALSE)\T1/ptm/m/n/10 : Re-turn s an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 10917--10925 \T1/zi4/m/it/10 "sparseSummary" \T1/ptm/m/n/10 which is ba-si-cally a [][]\T1/z i4/m/it/10 data.frame[][][] \T1/ptm/m/n/10 with columns \T1/zi4/m/it/10 (i,j,x) \T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 10942--10950 []\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10942--10950 \T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2389]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.11008 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2390] [2391] Underfull \hbox (badness 5036) in paragraph at lines 11194--11196 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2392] [2393] Underfull \hbox (badness 10000) in paragraph at lines 11401--11404 []\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2394] Underfull \vbox (badness 10000) has occurred while \output is active [2395] [2396] [2397] Underfull \hbox (badness 10000) in paragraph at lines 11670--11675 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2398] Underfull \hbox (badness 2057) in paragraph at lines 11750--11752 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2399] [2400] Underfull \hbox (badness 10000) in paragraph at lines 11919--11924 []\T1/ptm/m/n/10 Note that all \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 spMatrix[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/it/10 sparseMatrix[] [][](*,repr="T") \T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 11925--11931 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2401] Underfull \hbox (badness 1902) in paragraph at lines 11960--11964 []\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2402] [2403] [2404] [2405] [2406] [2407] [2408] Underfull \hbox (badness 6910) in paragraph at lines 12557--12559 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2409] Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12604. Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12604. [2410] [2411]) (./boot-pkg.tex [2412] Chapter 18. [2413] [2414] [2415] [2416] [2417] [2418] [2419] [2420] [2421] [2422] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2423] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2424] Underfull \vbox (badness 10000) has occurred while \output is active [2425] [2426] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will [2427] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2428] [2429] [2430] [2431] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2432] [2433] [2434] [2435] [2436] [2437] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2438] [2439] Underfull \vbox (badness 10000) has occurred while \output is active [2440] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2441] [2442] [2443] [2444] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2445] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2446] [2447] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2448] [2449] [2450] [2451] [2452] [2453] [2454] [2455] [2456] [2457] [2458] [2459] [2460] [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] [2470] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479] [2480] [2481] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2482] [2483] [2484] [2485] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2486] [2487] [2488] [2489] [2490] [2491] [2492] [2493] [2494] [2495] [2496] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2497] [2498] [2499] [2500] [2501] [2502] [2503] [2504] [2505] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2506] [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515]) (./class-pkg.tex [2516] Chapter 19. [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525] [2526] [2527] [2528] [2529] [2530] [2531] [2532]) (./cluster-pkg.tex Chapter 20. [2533] [2534] [2535] [2536] [2537] Underfull \vbox (badness 7777) has occurred while \output is active [2538] [2539] [2540] [2541] [2542] Underfull \hbox (badness 4144) in paragraph at lines 691--694 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2543] [2544] Underfull \hbox (badness 1412) in paragraph at lines 783--788 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2545] Underfull \hbox (badness 10000) in paragraph at lines 881--883 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2546] [2547] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2548] [2549] [2550] Underfull \hbox (badness 6110) in paragraph at lines 1207--1211 []\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2551] [2552] [2553] Underfull \hbox (badness 10000) in paragraph at lines 1476--1479 [2554] [2555] Underfull \hbox (badness 2503) in paragraph at lines 1588--1591 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2556] [2557] [2558] [2559] [2560] [2561] [2562] [2563] Underfull \hbox (badness 10000) in paragraph at lines 2182--2185 Underfull \hbox (badness 10000) in paragraph at lines 2196--2202 [][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2564] [2565] [2566] [2567] Underfull \hbox (badness 6675) in paragraph at lines 2431--2433 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2568] [2569] [2570] [2571] [2572] [2573] [2574] Underfull \hbox (badness 2980) in paragraph at lines 2961--2965 [][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [2575] [2576] [2577] [2578] [2579] [2580] Underfull \hbox (badness 1142) in paragraph at lines 3302--3305 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2581] [2582] Underfull \hbox (badness 1142) in paragraph at lines 3421--3424 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2583] [2584] [2585] Underfull \hbox (badness 2582) in paragraph at lines 3644--3649 [][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p tm/m/n/10 , [2586] Underfull \hbox (badness 3209) in paragraph at lines 3706--3711 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3706--3711 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx [2587] [2588] [2589] [2590] [2591] Underfull \hbox (badness 10000) in paragraph at lines 3998--4000 []\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2592] [2593] [2594] [2595] Underfull \hbox (badness 2626) in paragraph at lines 4227--4232 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col = [2596] Underfull \hbox (badness 1383) in paragraph at lines 4305--4310 []\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2597] [2598] [2599] [2600] [2601] [2602] [2603] Underfull \hbox (badness 10000) in paragraph at lines 4748--4750 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side [2604] [2605]) (./codetools-pkg.tex [2606] Chapter 21. [2607] [2608] [2609] [2610] [2611]) (./foreign-pkg.tex [2612] Chapter 22. [2613] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2614] [2615] [2616] [2617] [2618] [2619] [2620] Underfull \hbox (badness 10000) in paragraph at lines 505--514 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to Underfull \hbox (badness 7133) in paragraph at lines 550--558 []\T1/ptm/m/n/10 URL [][]$\T1/zi4/m/it/10 https : / / docs . microsoft . com / en-[]us / windows / win32 / intl / code-[]page-[]identifiers$[][] [2621] Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2622] [2623] [2624] Underfull \hbox (badness 10000) in paragraph at lines 812--813 [2625] [2626] [2627] Underfull \hbox (badness 10000) in paragraph at lines 990--992 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2628] [2629] [2630] [2631] Underfull \hbox (badness 10000) in paragraph at lines 1270--1276 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2632] [2633]) (./lattice-pkg.tex [2634] Chapter 23. [2635] Underfull \hbox (badness 1484) in paragraph at lines 117--121 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 117--121 \T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2636] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] [2645] [2646] [2647] [2648] [2649] [2650] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2651] Underfull \vbox (badness 4416) has occurred while \output is active [2652] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 strip.default[][][]\T1/ptm/m/n/10 , [2653] [2654] [2655] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2656] [2657] [2658] [2659] [2660] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2661] [2662] [2663] [2664] [2665] [2666] [2667] [2668] [2669] [2670] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2671] Underfull \hbox (badness 2486) in paragraph at lines 2970--2974 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2672] [2673] [2674] [2675] [2676] [2677] [2678]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.parallel}) has been already used, duplic ate ignored \relax l.3444 \aliasA{parallel}{B\_08\_splom}{parallel} [2679] [2680] [2681] [2682] [2683] [2684] [2685] Underfull \hbox (badness 5696) in paragraph at lines 3935--3939 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2686] [2687] Underfull \hbox (badness 1173) in paragraph at lines 4074--4078 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4101--4103 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2688] [2689] [2690] Underfull \hbox (badness 3492) in paragraph at lines 4297--4307 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4322--4325 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4325--4327 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p lot.polygon \T1/ptm/m/n/10 and [2691] [2692] [2693] [2694] [2695] [2696] [2697] [2698] [2699] [2700] Underfull \hbox (badness 6157) in paragraph at lines 5048--5051 []\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and [2701] [2702] [2703] [2704] [2705] [2706] Underfull \hbox (badness 10000) in paragraph at lines 5501--5504 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5501--5504 \T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2707] [2708] [2709] [2710] [2711] Underfull \hbox (badness 4805) in paragraph at lines 5863--5867 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 []\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5874--5881 \T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/it/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5874--5881 [][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2712] [2713] [2714] [2715] Underfull \hbox (badness 4242) in paragraph at lines 6174--6179 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6174--6179 \T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2716] [2717] Underfull \hbox (badness 2310) in paragraph at lines 6290--6295 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round if [2718] [2719] [2720] [2721] [2722] [2723] [2724] [2725] [2726] [2727] [2728] Underfull \hbox (badness 3168) in paragraph at lines 7072--7076 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2729] [2730] [2731] [2732] Underfull \hbox (badness 2012) in paragraph at lines 7343--7346 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2733] [2734] Underfull \hbox (badness 3333) in paragraph at lines 7515--7517 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing [2735] [2736] [2737] Underfull \vbox (badness 10000) has occurred while \output is active [2738] [2739] [2740] Underfull \hbox (badness 1436) in paragraph at lines 7929--7935 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] Underfull \hbox (badness 10000) in paragraph at lines 8487--8490 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp ose \T1/ptm/m/n/10 from [2749] Underfull \hbox (badness 1092) in paragraph at lines 8533--8535 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2750] [2751] Underfull \hbox (badness 3895) in paragraph at lines 8694--8697 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2752] Underfull \hbox (badness 1515) in paragraph at lines 8770--8774 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2753] [2754] Underfull \hbox (badness 6316) in paragraph at lines 8876--8881 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8893--8896 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2755] [2756] [2757] [2758] Overfull \hbox (1.94879pt too wide) in paragraph at lines 9181--9185 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/it/10 left,right,left.name,right.name,condition [2759] [2760] [2761] [2762] [2763] [2764] [2765] Underfull \hbox (badness 2310) in paragraph at lines 9639--9643 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9644--9647 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 , [2766] [2767] [2768]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9870 \aliasA{melanoma}{H\_melanoma}{melanoma} [2769] [2770] [2771] Underfull \hbox (badness 4144) in paragraph at lines 10094--10097 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10094--10097 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it /10 https : / / ruralhealth . und . edu / projects / [2772] [2773]) (./mgcv-pkg.tex [2774] Chapter 24. [2775] [2776] [2777] Underfull \hbox (badness 1142) in paragraph at lines 184--188 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 209--214 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2778] [2779] [2780] Underfull \vbox (badness 5345) has occurred while \output is active [2781] Underfull \hbox (badness 10000) in paragraph at lines 377--384 [][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 377--384 [][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][] \T1/ptm/m/n/10 , [2782] [2783] [2784] [2785] [2786] Underfull \hbox (badness 1406) in paragraph at lines 702--703 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2787] [2788] [2789] Underfull \hbox (badness 1158) in paragraph at lines 812--814 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion Underfull \hbox (badness 1259) in paragraph at lines 875--876 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2790] [2791] [2792] [2793] [2794] Underfull \hbox (badness 1281) in paragraph at lines 1159--1160 []\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n /10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt m/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2795] [2796] Underfull \vbox (badness 10000) has occurred while \output is active [2797] Underfull \vbox (badness 10000) has occurred while \output is active [2798] [2799] Underfull \vbox (badness 10000) has occurred while \output is active [2800] [2801] [2802] [2803] [2804] [2805] [2806] [2807] [2808] [2809] [2810] [2811] [2812] [2813] [2814] [2815] Underfull \hbox (badness 1142) in paragraph at lines 2360--2364 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2386--2391 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2816] [2817] [2818] [2819] [2820] [2821] Underfull \vbox (badness 10000) has occurred while \output is active [2822] Underfull \vbox (badness 10000) has occurred while \output is active [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] [2836] [2837] [2838] [2839] Underfull \hbox (badness 10000) in paragraph at lines 3821--3825 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2840] [2841] Underfull \vbox (badness 10000) has occurred while \output is active [2842] [2843] [2844] Underfull \hbox (badness 1184) in paragraph at lines 4107--4111 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2845] [2846] [2847] [2848] [2849] [2850] [2851] [2852] [2853] [2854] [2855] [2856] Underfull \hbox (badness 1142) in paragraph at lines 4828--4832 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2857] Underfull \hbox (badness 1231) in paragraph at lines 4932--4934 []\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with [2858] [2859] [2860] Underfull \vbox (badness 10000) has occurred while \output is active [2861] [2862] [2863] [2864] Underfull \hbox (badness 2181) in paragraph at lines 5376--5377 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2865] [2866] [2867] [2868] [2869] [2870] [2871] Underfull \hbox (badness 10000) in paragraph at lines 5765--5766 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2872] [2873] [2874] [2875] [2876] [2877] [2878] [2879] [2880] [2881] [2882] Underfull \hbox (badness 1142) in paragraph at lines 6350--6354 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2883] [2884] [2885] Underfull \vbox (badness 10000) has occurred while \output is active [2886] [2887] [2888] [2889] Underfull \hbox (badness 1087) in paragraph at lines 6722--6723 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2890] [2891] Underfull \vbox (badness 10000) has occurred while \output is active [2892] Underfull \vbox (badness 10000) has occurred while \output is active [2893] [2894] [2895] [2896] [2897] [2898] [2899] [2900] [2901] [2902] [2903] [2904] [2905] Underfull \hbox (badness 1242) in paragraph at lines 7668--7669 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2906] [2907] [2908] [2909] [2910] [2911] [2912] [2913] [2914] [2915] [2916] Underfull \hbox (badness 6001) in paragraph at lines 8308--8310 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] Underfull \vbox (badness 10000) has occurred while \output is active [2927] [2928] Underfull \hbox (badness 1038) in paragraph at lines 9057--9060 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9057--9060 \T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2929] Underfull \hbox (badness 10000) in paragraph at lines 9113--9116 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2930] [2931] [2932] [2933] [2934] [2935] [2936] [2937] [2938] [2939] [2940] Underfull \hbox (badness 1852) in paragraph at lines 9784--9787 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2941] [2942] [2943] Underfull \hbox (badness 1852) in paragraph at lines 9953--9956 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2944] Underfull \vbox (badness 10000) has occurred while \output is active [2945] Underfull \vbox (badness 10000) has occurred while \output is active [2946] Underfull \hbox (badness 1205) in paragraph at lines 10185--10187 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10185--10187 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10191--10196 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2947] [2948] Underfull \hbox (badness 1205) in paragraph at lines 10275--10277 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10275--10277 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2949] [2950] [2951] Underfull \hbox (badness 1253) in paragraph at lines 10474--10476 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2952] [2953] [2954] [2955] [2956] Underfull \hbox (badness 4792) in paragraph at lines 10735--10738 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10735--10738 \T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2957] [2958] Underfull \hbox (badness 10000) in paragraph at lines 10842--10845 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1 0 "deviance"\T1/ptm/m/n/10 , [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] Underfull \vbox (badness 10000) has occurred while \output is active [2970] [2971] Underfull \hbox (badness 3861) in paragraph at lines 11628--11631 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2972] [2973] Underfull \hbox (badness 1320) in paragraph at lines 11743--11748 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2974] [2975] Underfull \hbox (badness 1975) in paragraph at lines 11849--11854 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2976] Underfull \hbox (badness 1762) in paragraph at lines 11938--11950 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2977] [2978] [2979] Underfull \vbox (badness 10000) has occurred while \output is active [2980] Underfull \hbox (badness 7667) in paragraph at lines 12150--12156 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2981] Underfull \hbox (badness 10000) in paragraph at lines 12191--12192 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2982] [2983] [2984] [2985] [2986] Underfull \hbox (badness 10000) in paragraph at lines 12467--12469 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2987] [2988] Underfull \hbox (badness 10000) in paragraph at lines 12597--12598 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2989] [2990] Underfull \hbox (badness 1436) in paragraph at lines 12735--12742 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one [2991] [2992] Underfull \hbox (badness 10000) in paragraph at lines 12830--12831 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2993] [2994] [2995] [2996] [2997] [2998] [2999] Underfull \vbox (badness 10000) has occurred while \output is active [3000] [3001] [3002] Underfull \hbox (badness 10000) in paragraph at lines 13429--13435 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13429--13435 \T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note [3003] [3004] [3005] Underfull \vbox (badness 10000) has occurred while \output is active [3006] Underfull \vbox (badness 10000) has occurred while \output is active [3007] [3008] Underfull \hbox (badness 10000) in paragraph at lines 13772--13773 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3009] [3010] [3011] [3012] Underfull \hbox (badness 3895) in paragraph at lines 14032--14035 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [3013] Underfull \hbox (badness 10000) in paragraph at lines 14077--14079 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3014] [3015] [3016] [3017] [3018] Underfull \hbox (badness 1371) in paragraph at lines 14351--14357 []\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see [3019] Underfull \hbox (badness 10000) in paragraph at lines 14391--14395 [][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 14391--14395 [][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 14391--14395 [][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/it/10 factor.smooth.interaction[][][] [3020] [3021] [3022] Underfull \hbox (badness 2326) in paragraph at lines 14596--14603 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and [3023] [3024] Underfull \hbox (badness 2158) in paragraph at lines 14681--14681 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] [3046] [3047] [3048] [3049] [3050] [3051] Underfull \hbox (badness 1796) in paragraph at lines 16339--16342 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060]) (./nlme-pkg.tex Chapter 25. [3061] [3062] [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] Underfull \hbox (badness 2875) in paragraph at lines 1996--2002 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1996--2002 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 , [3091] [3092] [3093] [3094] Underfull \hbox (badness 10000) in paragraph at lines 2258--2264 [][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] [3103] [3104] [3105] [3106] [3107] [3108] [3109pdfTeX warning (ext4): destination with the same iden tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor ed ...shipout:D \box_use:N \l_shipout_box l.3194 ] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] [3123] [3124] [3125] [3126] [3127] Underfull \hbox (badness 1067) in paragraph at lines 4419--4424 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] Underfull \hbox (badness 10000) in paragraph at lines 5165--5169 [][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3140] [3141] [3142] [3143] [3144] [3145] [3146] Underfull \hbox (badness 10000) in paragraph at lines 5597--5600 [][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3147] [3148] [3149] [3150] [3151] [3152] [3153] Underfull \hbox (badness 10000) in paragraph at lines 5978--5983 [][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3154] [3155] [3156] [3157] Underfull \hbox (badness 1490) in paragraph at lines 6248--6259 [][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3158] Underfull \hbox (badness 10000) in paragraph at lines 6312--6314 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3159] [3160] [3161] [3162] [3163] [3164] Underfull \hbox (badness 10000) in paragraph at lines 6726--6728 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3165] [3166] [3167] [3168] Underfull \hbox (badness 10000) in paragraph at lines 6999--7006 [][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3169] [3170] [3171] [3172] Underfull \hbox (badness 10000) in paragraph at lines 7259--7264 [][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3173] [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183] [3184] [3185] [3186] [3187] [3188] [3189] [3190] [3191] Underfull \hbox (badness 10000) in paragraph at lines 8527--8529 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3192]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8578 \aliasA{sigma}{lmeObject}{sigma} [3193] [3194] [3195] [3196] Underfull \hbox (badness 10000) in paragraph at lines 8808--8815 [][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] Underfull \hbox (badness 10000) in paragraph at lines 9330--9337 [][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3205] [3206] [3207] [3208] [3209]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221] Underfull \hbox (badness 1596) in paragraph at lines 10465--10491 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3222] [3223] Underfull \hbox (badness 1490) in paragraph at lines 10603--10609 [][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 , [3224] [3225] [3226] [3227] Underfull \hbox (badness 10000) in paragraph at lines 10844--10846 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3228] [3229] [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] Underfull \hbox (badness 1286) in paragraph at lines 13742--13749 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or [3270] [3271] [3272] [3273] [3274] [3275] [3276] [3277] Underfull \hbox (badness 1215) in paragraph at lines 14288--14290 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3278] [3279] [3280] [3281] [3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289] [3290]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300] Underfull \hbox (badness 3884) in paragraph at lines 15825--15829 []\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199 7). Phar-ma-coki- Underfull \hbox (badness 4846) in paragraph at lines 15825--15829 \T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap -pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol- Underfull \hbox (badness 1953) in paragraph at lines 15825--15829 \T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/ it/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 / 35925 / [3301] [3302] Underfull \hbox (badness 1067) in paragraph at lines 15937--15942 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3303] [3304] [3305] [3306] Underfull \hbox (badness 1448) in paragraph at lines 16180--16189 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] [3316] Underfull \hbox (badness 1728) in paragraph at lines 16885--16888 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3317] [3318] [3319] [3320] [3321] Underfull \hbox (badness 8056) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3322] [3323] [3324] [3325] [3326] Underfull \hbox (badness 10000) in paragraph at lines 17542--17550 [][][]\T1/zi4/m/it/10 varComb[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varCons tPower[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varConstProp[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/it/10 varExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varFi xed[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varIdent[][][]\T1/ptm/m/n/10 , [] []\T1/zi4/m/it/10 varPower[][][]\T1/ptm/m/n/10 , [3327] [3328] [3329] [3330] [3331] [3332] [3333] [3334] [3335] [3336] Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3337] [3338] [3339] [3340] [3341] Underfull \hbox (badness 5036) in paragraph at lines 18576--18585 [][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3342] [3343] [3344] [3345] [3346] [3347] [3348] [3349] [3350] [3351] [3352] [3353] [3354]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3355] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [3356] [3357] [3358] [3359] [3360] [3361] [3362]) (./rpart-pkg.tex Chapter 27. [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391]) (./spatial-pkg.tex [3392] Chapter 28. [3393] [3394] [3395] [3396] [3397] [3398] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3399] [3400] [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411]) (./survival-pkg.tex [3412] Chapter 29. [3413] [3414] [3415] [3416] Underfull \hbox (badness 6412) in paragraph at lines 282--284 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3417] [3418]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.aml}) has been already used, duplicate ignored \relax l.382 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.382 ... Myelogenous Leukemia survival data}{aml} [3419] [3420] [3421] [3422] Overfull \vbox (3.85637pt too high) has occurred while \output is active [3423] [3424] [3425] [3426] [3427] [3428] [3429] Underfull \hbox (badness 1097) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3430] [3431] [3432]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1308 ...erapy for Stage B/C colon cancer}{colon} [3433] Underfull \hbox (badness 10000) in paragraph at lines 1356--1360 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by [3434] [3435] [3436] [3437] [3438] [3439] [3440] [3441] Underfull \hbox (badness 10000) in paragraph at lines 1935--1950 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice Underfull \hbox (badness 10000) in paragraph at lines 1935--1950 \T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the Underfull \hbox (badness 10000) in paragraph at lines 1935--1950 \T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S urv(time,status) ~ age + Underfull \hbox (badness 2119) in paragraph at lines 1935--1950 \T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i s un-nec-es-sary: ar-gu-ments within the [3442] [3443] [3444] [3445] [3446] [3447] [3448] [3449] [3450] [3451] [3452] [3453] [3454] [3455] [3456] [3457] Overfull \vbox (31.18587pt too high) has occurred while \output is active [3458] [3459] [3460] Underfull \hbox (badness 1389) in paragraph at lines 3295--3297 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3461] [3462] [3463] [3464] Overfull \hbox (467.89665pt too wide) in alignment at lines 3581--3581 [] [] Underfull \vbox (badness 10000) has occurred while \output is active [3465] Overfull \vbox (8.56093pt too high) has occurred while \output is active [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476] Underfull \vbox (badness 1533) has occurred while \output is active [3477] [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] [3488] [3489] [3490] Underfull \hbox (badness 5274) in paragraph at lines 5264--5266 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3491] [3492] [3493] [3494] [3495] [3496] [3497] [3498] [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] Underfull \hbox (badness 1281) in paragraph at lines 6488--6491 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d fbeta"\T1/ptm/m/n/10 , [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.solder}) has been already used, d uplicate ignored \relax l.7005 ...ata from a soldering experiment}{solder} [3516] Underfull \vbox (badness 1622) has occurred while \output is active [3517] [3518] [3519] [3520] [3521] [3522] [3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] Underfull \hbox (badness 10000) in paragraph at lines 8328--8337 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3534] [3535] Underfull \hbox (badness 1038) in paragraph at lines 8484--8490 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3536] [3537] [3538] [3539] [3540] Underfull \hbox (badness 10000) in paragraph at lines 8847--8852 [][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3541] [3542] [3543] [3544] [3545] [3546] [3547] [3548] [3549] [3550] [3551] [3552] Underfull \hbox (badness 1354) in paragraph at lines 9751--9755 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. It gives th e time range [3553] [3554] [3555] [3556] [3557] [3558] [3559] [3560] [3561] [3562] [3563] [3564] [3565] [3566] [3567] [3568] [3569] [3570] [3571] [3572] [3573] [3574] [3575] [3576]) (./fullrefman.ind [3577] [3578] [3579] [3580] [3581] [3582] [3583] [3584] [3585] [3586] [3587] [3588] [3589] [3590] [3591] [3592] [3593] [3594] [3595] [3596] [3597] [3598] [3599] [3600] [3601] Overfull \hbox (8.3567pt too wide) in paragraph at lines 2603--2605 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3602] [3603] [3604] [3605] [3606] [3607] Overfull \hbox (8.3567pt too wide) in paragraph at lines 3237--3239 []| \T1/zi4/m/it/10 smooth.construct.tensor.smooth.spec\T1/ptm/m/n/10 , [3608] [3609] [3610] [3611] [3612] [3613] [3614] [3615] [3616] [3617] Overfull \hbox (20.8567pt too wide) in paragraph at lines 4491--4493 []\T1/zi4/m/it/10 [,CsparseMatrix,index,index,logical-method Overfull \hbox (30.8567pt too wide) in paragraph at lines 4493--4495 []\T1/zi4/m/it/10 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[]\T1/zi4/m/it/10 %&%,nsparseMatrix,nCsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5140--5142 []\T1/zi4/m/it/10 %&%,nsparseMatrix,nsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 5144--5146 []\T1/zi4/m/it/10 %&%,sparseMatrix,diagonalMatrix-method [3623] Overfull \hbox (15.01662pt too wide) in paragraph at lines 5327--5329 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ad.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3624] Overfull \hbox (20.8567pt too wide) in paragraph at lines 5489--5491 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5491--5493 []\T1/zi4/m/it/10 all.equal,sparseMatrix,sparseVector-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5495--5497 []\T1/zi4/m/it/10 all.equal,sparseVector,sparseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 5497--5499 []\T1/zi4/m/it/10 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too wide) in paragraph at lines 6540--6542 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3631] [3632] [3633] Overfull \hbox (0.8567pt too wide) in paragraph at lines 7199--7201 []\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7201--7203 []\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7231--7233 []\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7233--7235 []\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7239--7241 []\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method [3634] [3635] [3636] [3637] Overfull \hbox (10.8567pt too wide) in paragraph at lines 7985--7987 []\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7987--7989 []\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7997--7999 []\T1/zi4/m/it/10 coerce,CHMfactor,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8001--8003 []\T1/zi4/m/it/10 coerce,CsparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8005--8007 []\T1/zi4/m/it/10 coerce,CsparseMatrix,lsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8007--8009 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.coo-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8009--8011 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csc-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8011--8013 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csr-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8015--8017 []\T1/zi4/m/it/10 coerce,CsparseMatrix,nsparseMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8017--8019 []\T1/zi4/m/it/10 coerce,CsparseMatrix,sparseVector-method Overfull \hbox (25.8567pt too wide) in paragraph at lines 8019--8021 []\T1/zi4/m/it/10 coerce,CsparseMatrix,symmetricMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8021--8023 []\T1/zi4/m/it/10 coerce,CsparseMatrix,TsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8039--8041 []\T1/zi4/m/it/10 coerce,ddiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8041--8043 []\T1/zi4/m/it/10 coerce,ddiMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8045--8047 []\T1/zi4/m/it/10 coerce,denseMatrix,CsparseMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8047--8049 []\T1/zi4/m/it/10 coerce,denseMatrix,generalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8049--8051 []\T1/zi4/m/it/10 coerce,denseMatrix,RsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8051--8053 []\T1/zi4/m/it/10 coerce,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8053--8055 []\T1/zi4/m/it/10 coerce,denseMatrix,symmetricMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8055--8057 []\T1/zi4/m/it/10 coerce,denseMatrix,TsparseMatrix-method [3638] Overfull \hbox (10.8567pt too wide) in paragraph at lines 8093--8095 []\T1/zi4/m/it/10 coerce,dgeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8113--8115 []\T1/zi4/m/it/10 coerce,dgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8115--8117 []\T1/zi4/m/it/10 coerce,dgTMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8117--8119 []\T1/zi4/m/it/10 coerce,diagonalMatrix,denseMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8119--8121 []\T1/zi4/m/it/10 coerce,diagonalMatrix,generalMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8125--8127 []\T1/zi4/m/it/10 coerce,diagonalMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8127--8129 []\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8175--8177 []\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method [3639] [3640] Overfull \hbox (5.8567pt too wide) in paragraph at lines 8327--8329 []\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8329--8331 []\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8361--8363 []\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8375--8377 []\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8377--8379 []\T1/zi4/m/it/10 coerce,lgTMatrix,triangularMatrix-method [3641] Overfull \hbox (15.8567pt too wide) in paragraph at lines 8403--8405 []\T1/zi4/m/it/10 coerce,lsparseMatrix,dsparseMatrix-method [3642] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8589--8591 []\T1/zi4/m/it/10 coerce,matrix.coo,CsparseMatrix-method [3643] Overfull \hbox (0.8567pt too wide) in paragraph at lines 8597--8599 []\T1/zi4/m/it/10 coerce,matrix.coo,TsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8599--8601 []\T1/zi4/m/it/10 coerce,matrix.csc,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8605--8607 []\T1/zi4/m/it/10 coerce,matrix.csc,TsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8607--8609 []\T1/zi4/m/it/10 coerce,matrix.csr,CsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8615--8617 []\T1/zi4/m/it/10 coerce,matrix.csr,RsparseMatrix-method Overfull \hbox (0.8567pt 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This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2021/Mageia) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./fullrefman.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-02-18> (/usr/share/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texmf-dist/tex/latex/base/bk10.clo)) (../../share/texmf/tex/latex/Rd.sty (/usr/share/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texmf-dist/tex/latex/tools/bm.sty) (/usr/share/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texmf-dist/tex/latex/tools/verbatim.sty) (/usr/share/texmf-dist/tex/latex/url/url.sty) (/usr/share/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texmf-dist/tex/latex/inconsolata/zi4.sty `inconsolata-zi4' v1.12, 2019/05/17 Text macros for Inconsolata (msharpe) (/usr/share/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texmf-dist/tex/generic/xkeyval/xkvutils.tex (/usr/share/texmf-dist/tex/generic/xkeyval/keyval.tex))))) (/usr/share/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texmf-dist/tex/latex/graphics-def/pdftex.def)) (/usr/share/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 377. 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[3] [4] Underfull \hbox (badness 6995) in paragraph at lines 143--151 []\T1/ptm/m/n/10 a small pos-i-tive floating-point num-ber \T1/zi4/m/n/10 x \T1 /ptm/m/n/10 such that \T1/zi4/m/n/10 1 -x != 1\T1/ptm/m/n/10 . It Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 equals \T1/zi4/m/n/10 double.base ^ double.neg.ulp.digits \T1/pt m/m/n/10 if \T1/zi4/m/n/10 double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/ptm/m/n/10 is 2 or \T1/zi4/m/n/10 double.rounding \T1/ptm/m/n/10 is 0; oth- er-wise, it is \T1/zi4/m/n/10 (double.base Underfull \hbox (badness 10000) in paragraph at lines 143--151 \T1/zi4/m/n/10 ^ double.neg.ulp.digits) / 2\T1/ptm/m/n/10 . Nor-mally \T1/zi4/m /n/10 1.110223e-16\T1/ptm/m/n/10 . As Underfull \hbox (badness 4995) in paragraph at lines 143--151 \T1/zi4/m/n/10 double.neg.ulp.digits \T1/ptm/m/n/10 is bounded be-low by \T1/zi 4/m/n/10 -(double.digits + 3)\T1/ptm/m/n/10 , [5] Underfull \hbox (badness 10000) in paragraph at lines 212--217 []\T1/ptm/m/n/10 when [][]\T1/zi4/m/n/10 capabilities[][][]("long.double") \T1/ ptm/m/n/10 is true, there are 10 such Underfull \hbox (badness 1675) in paragraph at lines 212--217 \T1/zi4/m/n/10 "longdouble." \T1/ptm/m/n/10 val-ues, spec-i-fy-ing the \T 1/zi4/m/n/10 long double \T1/ptm/m/n/10 prop-erty cor- [6] [7] Underfull \hbox (badness 1178) in paragraph at lines 322--325 []\T1/ptm/m/n/10 character string, the pre-ferred set-ting for [][]\T1/zi4/m/n/ 10 options[][][]("pkgType")\T1/ptm/m/n/10 . Val-ues [8] [9] [10] Underfull \hbox (badness 2556) in paragraph at lines 561--567 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/n/10 insertions\T1/ptm/m/n/10 ', [11] [12] [13] (/usr/share/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 2671) in paragraph at lines 1209--1212 []\T1/ptm/m/n/10 If the calls to \T1/zi4/m/n/10 FUN \T1/ptm/m/n/10 re-turn vec- tors of dif-fer-ent lengths, \T1/zi4/m/n/10 apply \T1/ptm/m/n/10 re-turns a lis t of length [21] [22] (/usr/share/texmf-dist/tex/latex/base/t1cmtt.fd) (/usr/share/texmf-dist/tex/latex/base/ts1cmtt.fd) [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1532--1538 [25] [26] [27] [28] [29] [30] [31] Overfull \hbox (26.27782pt too wide) in paragraph at lines 2008--2008 []\T1/zi4/m/n/9 ## http://www.mathworks.de/de/help/matlab/matlab_prog/represen t-date-and-times-in-MATLAB.html)[] [32] [33] [34] [35] [36] [37] Underfull \hbox (badness 10000) in paragraph at lines 2446--2448 []\T1/ptm/m/n/10 The val-ues of the splits can also be ob-tained (less ef-fi-ci ently) by Underfull \hbox (badness 10000) in paragraph at lines 2449--2454 [][][]\T1/zi4/m/n/10 apply[][][] \T1/ptm/m/n/10 al-ways sim-pli-fies com-mon le ngth re-sults, so at-tempt-ing to split via Underfull \hbox (badness 1102) in paragraph at lines 2449--2454 \T1/zi4/m/n/10 apply(x,MARGIN,identity) \T1/ptm/m/n/10 does not work (as it sim -ply gives \T1/zi4/m/n/10 x\T1/ptm/m/n/10 ). By chain-ing \T1/zi4/m/n/10 asplit [38] [39] [40] [41] [42] [43] [44] [45] [46] [47] [48] [49] [50] Underfull \vbox (badness 10000) has occurred while \output is active [51] [52] [53] [54] [55] [56] [57] Underfull \hbox (badness 10000) in paragraph at lines 3836--3838 []\T1/ptm/m/n/10 The num-ber of lines printed for the de-parsed call can be lim -ited by set-ting [58] [59] [60] Overfull \hbox (6.42029pt too wide) in paragraph at lines 4077--4077 [] \T1/zi4/m/n/10 c.factor <- function(..., recursive=TRUE) unlist(list(...) , recursive=recursive) [61] [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 2521) in paragraph at lines 5115--5117 []\T1/ptm/m/n/10 a char-ac-ter vec-tor, or an ob-ject that can be co-erced to c har-ac-ter by [76] [77] [78] [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] [89] [90] [91] [92] Overfull \hbox (5.27168pt too wide) in paragraph at lines 6290--6290 []\T1/zi4/m/n/9 stopifnot(is.na(NpNA), is.na(NA_complex_), is.na(Re(NA_complex _)), is.na(Im(NA_complex_)))[] [93] [94] [95] [96] [97] [98] Overfull \hbox (46.35893pt too wide) in paragraph at lines 6754--6756 []\T1/ptm/m/n/10 character string, par-tially matched to \T1/zi4/m/n/10 c("defa ult","internal","wininet","libcurl")\T1/ptm/m/n/10 : [99] [100] Underfull \hbox (badness 10000) in paragraph at lines 6919--6922 []\T1/ptm/m/n/10 A note on `\T1/zi4/m/n/10 file://\T1/ptm/m/n/10 ' URLs. The mo st gen-eral form (from RFC1738) is [101] [102] [103] Underfull \hbox (badness 6063) in paragraph at lines 7101--7107 []\T1/ptm/m/n/10 As from \T1/phv/m/n/10 R \T1/ptm/m/n/10 3.0.0 the en-cod-ing \ T1/zi4/m/n/10 "UTF-8-BOM" \T1/ptm/m/n/10 is ac-cepted for read-ing and will re- Underfull \hbox (badness 2343) in paragraph at lines 7101--7107 \T1/ptm/m/n/10 move a Byte Or-der Mark if present (which it of-ten is for files and web-pages gen-er- Underfull \hbox (badness 1708) in paragraph at lines 7101--7107 \T1/ptm/m/n/10 ated by Mi-crosoft ap-pli-ca-tions). If a BOM is re-quired (it i s not rec-om-mended) when Underfull \hbox (badness 1831) in paragraph at lines 7101--7107 \T1/ptm/m/n/10 writ-ing it should be writ-ten ex-plic-itly, e.g. by \T1/zi4/m/n /10 writeChar("\ufeff",con,eos = NULL) \T1/ptm/m/n/10 or Underfull \hbox (badness 1303) in paragraph at lines 7163--7170 []\T1/zi4/m/n/10 file \T1/ptm/m/n/10 can be used with \T1/zi4/m/n/10 descriptio n = "clipboard" \T1/ptm/m/n/10 in mode \T1/zi4/m/n/10 "r" \T1/ptm/m/n/10 only. This reads the [104] Underfull \hbox (badness 2111) in paragraph at lines 7174--7179 []\T1/ptm/m/n/10 Unix users wish-ing to \T1/ptm/m/it/10 write \T1/ptm/m/n/10 to one of the X11 se-lec-tions may be able to do so via [105] [106] Underfull \vbox (badness 10000) has occurred while \output is active [107] [108] Underfull \hbox (badness 1077) in paragraph at lines 7492--7498 []\T1/ptm/m/n/10 A length-one log-i-cal vec-tor that is not \T1/zi4/m/n/10 NA\T 1/ptm/m/n/10 . Con-di-tions of length greater Underfull \hbox (badness 1231) in paragraph at lines 7492--7498 \T1/ptm/m/n/10 than one are cur-rently ac-cepted with a warn-ing, but only the first el-e- [109] [110] [111] [112] [113] Underfull \hbox (badness 2096) in paragraph at lines 7834--7838 \T1/zi4/m/n/10 status _ codes$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / List _ of _ FTP _ server _ return _ codes$ [][]\T1/ptm/m/n/10 . [114] [115] Underfull \hbox (badness 2351) in paragraph at lines 7952--7955 [][][]\T1/zi4/m/n/10 split[][][] \T1/ptm/m/n/10 for split-ting a vari-able ac-c ord-ing to a group fac-tor; [][]\T1/zi4/m/n/10 factor[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/n/10 tabulate[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 table[][][]\T 1/ptm/m/n/10 , [116] [117] [118] [119] [120] Underfull \hbox (badness 4479) in paragraph at lines 8281--8292 [][][]\T1/zi4/m/n/10 I[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 plot.data.frame [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 print.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 row.names[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 names[] [][] \T1/ptm/m/n/10 (for the col-umn names), [121] [122] [123] [124] [125] [126] Underfull \hbox (badness 1629) in paragraph at lines 8730--8742 []\T1/ptm/m/n/10 A few times have spe-cific is-sues. First, the leap sec-onds a re ig-nored, and real times Underfull \hbox (badness 1609) in paragraph at lines 8730--8742 \T1/ptm/m/n/10 there is a prob-lem in the POSIX/C99 stan-dard with \T1/zi4/m/n/ 10 "1969-12-31 23:59:59 UTC"\T1/ptm/m/n/10 , which Underfull \hbox (badness 2426) in paragraph at lines 8730--8742 \T1/ptm/m/n/10 is \T1/zi4/m/n/10 -1 \T1/ptm/m/n/10 in cal-en-dar time and that value is on those OSes also used as an er-ror code. [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] Underfull \hbox (badness 1178) in paragraph at lines 9486--9490 []\T1/ptm/m/n/10 If true, [][]\T1/zi4/m/n/10 list[][][]\T1/ptm/m/n/10 s and ato mic vec-tors with non-[][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 names (see [][ ]\T1/zi4/m/n/10 names[][][]\T1/ptm/m/n/10 ) are de- [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] Underfull \hbox (badness 6396) in paragraph at lines 11103--11111 []\T1/ptm/m/n/10 For the de-fault meth-ods, and when-ever there are equiv-a-len t method def-i-ni-tions for Underfull \hbox (badness 1946) in paragraph at lines 11103--11111 \T1/zi4/m/n/10 duplicated \T1/ptm/m/n/10 and \T1/zi4/m/n/10 anyDuplicated\T1/pt m/m/n/10 , \T1/zi4/m/n/10 anyDuplicated(x,...) \T1/ptm/m/n/10 is a ``gen-er-al- ized'' short-cut for [161] [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] [173] [174] [175] Underfull \hbox (badness 4569) in paragraph at lines 12221--12225 []\T1/ptm/m/n/10 When eval-u-at-ing ex-pres-sions in a data frame that has been passed as an ar-gu-ment Underfull \hbox (badness 2401) in paragraph at lines 12221--12225 \T1/ptm/m/n/10 to a func-tion, the rel-e-vant en-clo-sure is of-ten the caller' s en-vi-ron-ment, i.e., one needs [176] [177] [178] [179] [180] [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] [196] [197] [198] Underfull \hbox (badness 2253) in paragraph at lines 13896--13898 []\T1/ptm/m/n/10 character vec-tors con-tain-ing file paths. Tilde-expansion is done: see [199] Underfull \hbox (badness 1565) in paragraph at lines 13969--13973 [][][]\T1/zi4/m/n/10 Sys.readlink[][][] \T1/ptm/m/n/10 to find out about sym-bo lic links, [][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 fi le.access[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[][][]\T1/ptm/m/n/ 10 , and [200] Underfull \hbox (badness 4927) in paragraph at lines 14013--14015 []\T1/ptm/m/n/10 It can also be used for en-vi-ron-ment paths such as \T1/zi4/m /n/10 PATH \T1/ptm/m/n/10 and \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 with \T1/zi4 /m/n/10 fsep = [201] Underfull \hbox (badness 3148) in paragraph at lines 14115--14120 [][][]\T1/zi4/m/n/10 files[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 help[][][]\T1/ptm/m/n/10 ; [][]\T1/zi4 /m/n/10 RShowDoc[][][] \T1/ptm/m/n/10 call \T1/zi4/m/n/10 file.show() \T1/ptm/m /n/10 for \T1/zi4/m/n/10 type = "text"\T1/ptm/m/n/10 . Con-sider [202] Underfull \hbox (badness 1466) in paragraph at lines 14162--14165 []\T1/ptm/m/n/10 character vec-tors, con-tain-ing file names or paths. For \T1/ zi4/m/n/10 file.copy \T1/ptm/m/n/10 and [203] [204] Underfull \hbox (badness 10000) in paragraph at lines 14289--14293 [][][]\T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.ac cess[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.path[][][]\T1/ptm/m/n/10 , [ ][]\T1/zi4/m/n/10 file.show[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 list.files [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 unlink[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/n/10 basename[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 14300--14303 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Hard _ link$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wik i / [205] [206] [207] [208] Underfull \hbox (badness 3965) in paragraph at lines 14594--14598 []\T1/ptm/m/n/10 This is the same com-pu-ta-tion as for the em-pir-i-cal dis-tr i-bu-tion func-tion, and in-deed, [209] [210] [211] [212] [213] [214] [215] [216] [217] [218] [219] [220] Underfull \hbox (badness 4429) in paragraph at lines 15372--15375 []\T1/ptm/m/n/10 an atomic nu-mer-i-cal or char-ac-ter ob-ject, pos-si-bly [][] \T1/zi4/m/n/10 complex[][][] \T1/ptm/m/n/10 only for [221] Underfull \hbox (badness 10000) in paragraph at lines 15478--15480 []\T1/ptm/m/n/10 This works via \T1/zi4/m/n/10 prettyNum()\T1/ptm/m/n/10 , whic h calls Underfull \hbox (badness 1215) in paragraph at lines 15478--15480 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero) \T1/ptm/m/n/10 three times in this case, see Underfull \hbox (badness 10000) in paragraph at lines 15500--15505 []\T1/ptm/m/n/10 For num-bers, \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 calls \T 1/zi4/m/n/10 prettyNum() \T1/ptm/m/n/10 when needed which it-self calls Underfull \hbox (badness 1558) in paragraph at lines 15500--15505 \T1/zi4/m/n/10 .format.zeros(*,replace=replace.zero)\T1/ptm/m/n/10 . (\T1/ptm/m /it/10 ``when needed''\T1/ptm/m/n/10 : when \T1/zi4/m/n/10 zero.print \T1/ptm/m /n/10 is not Underfull \hbox (badness 10000) in paragraph at lines 15512--15516 []\T1/zi4/m/n/10 formatC \T1/ptm/m/n/10 does not nec-es-sar-ily align the num-b ers on the dec-i-mal point, so Underfull \hbox (badness 2426) in paragraph at lines 15512--15516 \T1/zi4/m/n/10 formatC(c(6.11,13.1),digits = 2,format = "fg") \T1/ptm/m/n/10 gi ves \T1/zi4/m/n/10 c("6.1"," 13")\T1/ptm/m/n/10 . If you want [222] Underfull \hbox (badness 2035) in paragraph at lines 15551--15555 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/n/10 decimal.mark \T1/ptm/m/n/10 in \T1/zi4/m/n/10 formatC() \T1/ptm/m/n/10 was changed in \T1/phv/m/n/10 R \T1/pt m/m/n/10 3.2.0: for use within [223] Underfull \vbox (badness 10000) has occurred while \output is active [224] [225] [226] [227] [228] [229] [230] [231] Underfull \hbox (badness 2452) in paragraph at lines 16151--16155 []\T1/zi4/m/n/10 gctorture2 \T1/ptm/m/n/10 can also be in-voked via en-vi-ron-m ent vari-ables at the start of the \T1/phv/m/n/10 R \T1/ptm/m/n/10 ses- Underfull \hbox (badness 1147) in paragraph at lines 16151--16155 \T1/ptm/m/n/10 sion. \T1/zi4/m/n/10 R_GCTORTURE \T1/ptm/m/n/10 cor-re-sponds to the \T1/zi4/m/n/10 step \T1/ptm/m/n/10 ar-gu-ment, \T1/zi4/m/n/10 R_GCTORTURE_ WAIT \T1/ptm/m/n/10 to \T1/zi4/m/n/10 wait\T1/ptm/m/n/10 , and [232] [233] Underfull \hbox (badness 1092) in paragraph at lines 16324--16329 [][]\T1/zi4/m/n/10 library.dynam[][][]\T1/ptm/m/n/10 , or can be found af-ter t he DLL has been loaded us-ing [234] [235] [236] [237] Underfull \hbox (badness 6741) in paragraph at lines 16577--16581 \T1/ptm/m/n/10 Additionally, the list will have an ad-di-tional class, be-ing \ T1/zi4/m/n/10 CRoutine\T1/ptm/m/n/10 , \T1/zi4/m/n/10 CallRoutine\T1/ptm/m/n/10 , [238] [239] [240] [241] [242] [243] [244] [245] [246] Underfull \vbox (badness 10000) has occurred while \output is active [247] [248] [249] [250] [251] [252] [253] [254] [255] Underfull \hbox (badness 1478) in paragraph at lines 17899--17902 []\T1/ptm/m/n/10 A char-ac-ter vec-tor, or an ob-ject to be con-verted to a cha r-ac-ter vec-tor [256] [257] [258] [259] Underfull \hbox (badness 10000) in paragraph at lines 18159--18161 []\T1/ptm/m/n/10 the `root' col-la-tion: see [][]$\T1/zi4/m/n/10 https : / / ww w . unicode . org / reports / tr35 / [260] [261] [262] [263] [264] [265] [266] [267] Underfull \hbox (badness 1442) in paragraph at lines 18759--18761 []\T1/ptm/m/n/10 the choice of de-fault graph-ics de-vice launched when needed and by [][]\T1/zi4/m/n/10 dev.new[][][]\T1/ptm/m/n/10 : see [268] [269] [270] [271] [272] Underfull \hbox (badness 10000) in paragraph at lines 19090--19096 [273] [274] [275] Underfull \hbox (badness 1248) in paragraph at lines 19335--19338 []\T1/zi4/m/n/10 is.atomic \T1/ptm/m/n/10 is true for the [][]atomic[][][] type s (\T1/zi4/m/n/10 "logical"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "integer"\T1/ptm/m/n /10 , \T1/zi4/m/n/10 "numeric"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "complex"\T1/ptm/ m/n/10 , [276] [277] [278] [279] [280] Underfull \hbox (badness 4739) in paragraph at lines 19598--19600 []\T1/ptm/m/n/10 numeric scalar >= 0. Smaller dif-fer-ences are not con-sid-ere d, see [281] [282] [283] Underfull \hbox (badness 1603) in paragraph at lines 19825--19828 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [284] [285] [286] Underfull \hbox (badness 1596) in paragraph at lines 20017--20022 \T1/ptm/m/n/10 trix or, if \T1/zi4/m/n/10 simplify = "array"\T1/ptm/m/n/10 , an ar-ray if ap-pro-pri-ate, by ap-ply-ing \T1/zi4/m/n/10 simplify2array()\T1/ptm /m/n/10 . [287] [288] [289] [290] [291] [292] [293] [294] [295] Underfull \hbox (badness 2469) in paragraph at lines 20622--20627 []\T1/ptm/m/n/10 In late 2017 a \T1/zi4/m/n/10 libcurl \T1/ptm/m/n/10 in-stal-l a-tion was seen di-vided into two li-braries, \T1/zi4/m/n/10 libcurl \T1/ptm/m/ n/10 and [296] Underfull \hbox (badness 10000) in paragraph at lines 20710--20714 []\T1/ptm/m/n/10 By de-fault \T1/zi4/m/n/10 R_LIBS \T1/ptm/m/n/10 is un-set, an d \T1/zi4/m/n/10 R_LIBS_USER \T1/ptm/m/n/10 is set to di-rec-tory Underfull \hbox (badness 2460) in paragraph at lines 20710--20714 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 R/\T1/ptm/m/sl/10 R.version$platform\T1/zi4/m/n/ 10 -library/\T1/ptm/m/sl/10 x.y\T1/ptm/m/n/10 ' of the home di-rec-tory (or `\T 1/zi4/m/n/10 Library/R/\T1/ptm/m/sl/10 x.y\T1/zi4/m/n/10 /library\T1/ptm/m/n/10 ' [297] [298] [299] Underfull \hbox (badness 1014) in paragraph at lines 20880--20885 []\T1/ptm/m/n/10 Normally \T1/zi4/m/n/10 library \T1/ptm/m/n/10 re-turns (in-vi s-i-bly) the list of at-tached pack-ages, but \T1/zi4/m/n/10 TRUE \T1/ptm/m/n/1 0 or \T1/zi4/m/n/10 FALSE \T1/ptm/m/n/10 if [300] [301] [302] [303] [304] [305] [306] [307] [308] [309] [310] [311] Underfull \hbox (badness 1264) in paragraph at lines 21729--21734 []\T1/ptm/m/n/10 character string. The fol-low-ing cat-e-gories should al-ways be sup-ported: Underfull \hbox (badness 4441) in paragraph at lines 21758--21761 []\T1/ptm/m/n/10 Note that set-ting cat-e-gory \T1/zi4/m/n/10 "LC_ALL" \T1/ptm/ m/n/10 sets only cat-e-gories \T1/zi4/m/n/10 "LC_COLLATE"\T1/ptm/m/n/10 , \T1/z i4/m/n/10 "LC_CTYPE"\T1/ptm/m/n/10 , [312] [313] [314] [315] [316] [317] [318] [319] [320] [321] [322] Underfull \hbox (badness 6047) in paragraph at lines 22505--22507 []\T1/ptm/m/n/10 The al-go-rithm used by \T1/zi4/m/n/10 make.unique \T1/ptm/m/n /10 has the prop-erty that \T1/zi4/m/n/10 make.unique(c(A,B)) == [323] [324] [325] [326] [327] [328] [329] [330] [331] [332] [333] [334] [335] [336] [337] [338] Underfull \hbox (badness 10000) in paragraph at lines 23575--23581 [][]$\T1/zi4/m/n/10 https : / / zlib . net/$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m /n/10 https : / / en . wikipedia . org / wiki / Gzip$[][]\T1/ptm/m/n/10 , [][]$ \T1/zi4/m/n/10 http : / / www . bzip . org/$[][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 23575--23581 [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Bzip2$[][]\T1/ptm /m/n/10 , [][]$\T1/zi4/m/n/10 https : / / tukaani . org / xz/$[][] \T1/ptm/m/n/ 10 and [][]$\T1/zi4/m/n/10 https : [339] [340] [341] [342] [343] [344] [345] [346] Underfull \hbox (badness 2790) in paragraph at lines 24076--24079 []\T1/zi4/m/n/10 packageStartupMessage \T1/ptm/m/n/10 is a vari-ant whose mes-s ages can be sup-pressed sep-a-rately by Underfull \hbox (badness 1571) in paragraph at lines 24076--24079 \T1/zi4/m/n/10 suppressPackageStartupMessages\T1/ptm/m/n/10 . (They are still m es-sages, so can be sup-pressed by [347] [348] [349] [350] Underfull \hbox (badness 1194) in paragraph at lines 24362--24365 []\T1/ptm/m/n/10 The de-fault method for \T1/zi4/m/n/10 anyNA \T1/ptm/m/n/10 ha n-dles atomic vec-tors with-out a class and \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 . It calls [351] [352] Underfull \hbox (badness 2368) in paragraph at lines 24569--24575 []\T1/ptm/m/n/10 For an [][]\T1/zi4/m/n/10 environment[][][] env\T1/ptm/m/n/10 , \T1/zi4/m/n/10 names(env) \T1/ptm/m/n/10 gives the names of the cor-re-spond- ing list, i.e., Underfull \hbox (badness 4981) in paragraph at lines 24569--24575 \T1/zi4/m/n/10 names(as.list(env,all.names = TRUE)) \T1/ptm/m/n/10 which are al so given by [][]\T1/zi4/m/n/10 ls[][][](env,all.names = [353] [354] [355] [356] [357] [358] Underfull \hbox (badness 10000) in paragraph at lines 24952--24955 []\T1/ptm/m/n/10 optional [][]\T1/zi4/m/n/10 logical[][][] \T1/ptm/m/n/10 even- tu-ally to be passed to \T1/zi4/m/n/10 print()\T1/ptm/m/n/10 , used by [359] [360] [361] [362] [363] [364] [365] [366] [367] Underfull \hbox (badness 10000) in paragraph at lines 25569--25571 []\T1/zi4/m/n/10 isNamespaceLoaded(pkg) \T1/ptm/m/n/10 is equiv-a-lent to but m ore ef-fi-cient than \T1/zi4/m/n/10 pkg %in% [368] [369] [370] [371] [372] [373] [374] [375] [376] [377] [378] [379] Underfull \hbox (badness 1038) in paragraph at lines 26414--26422 []\T1/ptm/m/n/10 the pack-ages that are at-tached by de-fault when \T1/phv/m/n/ 10 R \T1/ptm/m/n/10 starts up. Ini-tially Underfull \hbox (badness 1735) in paragraph at lines 26414--26422 \T1/ptm/m/n/10 set from value of the en-vi-ron-ment vari-able \T1/zi4/m/n/10 R_ DEFAULT_PACKAGES\T1/ptm/m/n/10 , or if that is un- Underfull \hbox (badness 1292) in paragraph at lines 26414--26422 \T1/ptm/m/n/10 set to \T1/zi4/m/n/10 c("datasets","utils","grDevices","graphics ","stats","methods")\T1/ptm/m/n/10 . (Set Underfull \hbox (badness 1881) in paragraph at lines 26423--26426 []\T1/ptm/m/n/10 integer value con-trol-ling the print-ing of lan-guage con-str ucts which are Underfull \hbox (badness 6220) in paragraph at lines 26447--26449 []\T1/ptm/m/n/10 Extra command-line ar-gu-ment(s) for non-default meth-ods: see [380] [381] Underfull \hbox (badness 2142) in paragraph at lines 26588--26592 []\T1/ptm/m/n/10 the de-fault pa-per for-mat used by [][]\T1/zi4/m/n/10 postscr ipt[][][]\T1/ptm/m/n/10 ; set by en-vi-ron-ment vari-able Underfull \hbox (badness 1968) in paragraph at lines 26645--26650 []\T1/ptm/m/n/10 the com-mand used by [][]\T1/zi4/m/n/10 postscript[][][] \T1/p tm/m/n/10 for print-ing; set by en-vi-ron-ment vari-able [382] [383] [384] Underfull \hbox (badness 10000) in paragraph at lines 26937--26943 []\T1/ptm/m/n/10 The URL of a Bio-con-duc-tor mir-ror for use by [][]\T1/zi4/m/ n/10 setRepositories[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 26937--26943 \T1/ptm/m/n/10 e.g. the de-fault `\T1/zi4/m/n/10 "https://bioconductor.org"\T1/ ptm/m/n/10 ' or the Eu-ro-pean mir-ror Underfull \hbox (badness 10000) in paragraph at lines 26937--26943 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 "https://bioconductor.statistik.tu-dortmund.de"\ T1/ptm/m/n/10 '. Can be set by Underfull \hbox (badness 10000) in paragraph at lines 26950--26953 []\T1/ptm/m/n/10 default Cc: ad-dress used by [][]\T1/zi4/m/n/10 create.post[][ ][] \T1/ptm/m/n/10 (and hence[][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/n/10 and [385] Underfull \hbox (badness 2689) in paragraph at lines 26976--26978 []\T1/ptm/m/n/10 optional in-te-ger vec-tor for set-ting ports of the in-ter-na l HTTP server, see Underfull \hbox (badness 10000) in paragraph at lines 27011--27016 []\T1/ptm/m/n/10 Used by [][]\T1/zi4/m/n/10 install.packages[][][] \T1/ptm/m/n/ 10 (and in-di-rectly Underfull \hbox (badness 2529) in paragraph at lines 27017--27028 \T1/ptm/m/n/10 in-di-rectly [][]\T1/zi4/m/n/10 update.packages[][][]\T1/ptm/m/n /10 ) on plat-forms which sup-port bi-nary pack-ages. Pos-si- Underfull \hbox (badness 2512) in paragraph at lines 27017--27028 \T1/ptm/m/n/10 ble val-ues are \T1/zi4/m/n/10 "never"\T1/ptm/m/n/10 , \T1/zi4/m /n/10 "interactive" \T1/ptm/m/n/10 (which means ask in in-ter-ac-tive use and Underfull \hbox (badness 7203) in paragraph at lines 27029--27032 []\T1/ptm/m/n/10 default email-ing method used by [][]\T1/zi4/m/n/10 create.pos t[][][] \T1/ptm/m/n/10 and hence [][]\T1/zi4/m/n/10 bug.report[][][] \T1/ptm/m/ n/10 and [386] [387] [388] [389] [390] [391] [392] [393] Underfull \hbox (badness 10000) in paragraph at lines 27576--27579 []\T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 str2lang(s ) \T1/ptm/m/n/10 re-turn spe-cial ver-sions of [394] Underfull \hbox (badness 7925) in paragraph at lines 27656--27660 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 vec-to r \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2expression(s) \T1/ptm/m/n /10 cor-re-sponds to Underfull \hbox (badness 1622) in paragraph at lines 27656--27660 [][]\T1/zi4/m/n/10 parse[][][](text = s,keep.source=FALSE)\T1/ptm/m/n/10 , whic h is al-ways of type ([][]\T1/zi4/m/n/10 typeof[][][]\T1/ptm/m/n/10 ) and [][]\ T1/zi4/m/n/10 class[][][] Underfull \hbox (badness 6125) in paragraph at lines 27661--27670 []\T1/ptm/m/n/10 for a [][]\T1/zi4/m/n/10 character[][][] \T1/ptm/m/n/10 string \T1/zi4/m/n/10 s\T1/ptm/m/n/10 , \T1/zi4/m/n/10 str2lang(s) \T1/ptm/m/n/10 cor -re-sponds to [][]\T1/zi4/m/n/10 parse[][][](text = [395] [396] [397] Underfull \hbox (badness 1237) in paragraph at lines 27941--27945 []\T1/ptm/m/n/10 On most builds of \T1/phv/m/n/10 R \T1/ptm/m/n/10 a lead-ing \ T1/zi4/m/n/10 ~user \T1/ptm/m/n/10 will ex-pand to the home di-rec- [398] [399] [400] [401] [402] [403] [404] [405] [406] Underfull \hbox (badness 2726) in paragraph at lines 28534--28537 []\T1/ptm/m/n/10 character string (or \T1/zi4/m/n/10 NULL\T1/ptm/m/n/10 ) in-di -cat-ing [][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 val-ues in printed out-put, see [407] [408] [409] [410] [411] [412] [413] [414] [415] [416] [417] [418] Underfull \hbox (badness 1603) in paragraph at lines 29284--29287 []\T1/ptm/m/n/10 LAPACK and LIN-PACK are from [][]$\T1/zi4/m/n/10 https : / / w ww . netlib . org / lapack/$[][] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / www . [419] [420] [421] [422] [423] [424] Underfull \vbox (badness 10000) has occurred while \output is active [425] [426] [427] [428] [429] [430] [431] Underfull \hbox (badness 1533) in paragraph at lines 30279--30282 []\T1/ptm/m/n/10 As with all com-piled code, mis-specifying these func-tions ca n crash \T1/phv/m/n/10 R\T1/ptm/m/n/10 . Do in-clude the [432] [433] [434] Underfull \hbox (badness 1163) in paragraph at lines 30442--30453 []\T1/ptm/m/n/10 If all com-po-nents are dif-fer-ent (and no \T1/zi4/m/n/10 NA\ T1/ptm/m/n/10 s), the ranks are well de-fined, with val-ues in [435] [436] [437] [438] [439] [440] [441] [442] [443] [444] [445] [446] [447] [448] [449] [450] [451] [452] [453] [454] [455] [456] [457] Underfull \hbox (badness 10000) in paragraph at lines 32026--32030 []\T1/zi4/m/n/10 regexpr \T1/ptm/m/n/10 and \T1/zi4/m/n/10 gregexpr \T1/ptm/m/n /10 sup-port `named cap-ture'. If groups are named, e.g., Underfull \hbox (badness 1221) in paragraph at lines 32026--32030 \T1/zi4/m/n/10 "(?[A-Z][a-z]+)" \T1/ptm/m/n/10 then the po-si-tions of t he matches are also re-turned by name. Underfull \hbox (badness 3557) in paragraph at lines 32047--32049 []\T1/ptm/m/n/10 The POSIX 1003.2 stan-dard at [][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919799 / Underfull \hbox (badness 1122) in paragraph at lines 32050--32054 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 pcre2pattern \T1/ptm/m/n/10 or \T1/zi4/m/n/ 10 pcrepattern man \T1/ptm/m/n/10 page (found as part of [][]$\T1/zi4/m/n/10 ht tps : / / www . pcre . org / [458] [459] [460] [461] [462] [463] [464] [465] Underfull \hbox (badness 1655) in paragraph at lines 32605--32607 []\T1/ptm/m/n/10 a vec-tor (atomic, not a list) for \T1/zi4/m/n/10 rle()\T1/ptm /m/n/10 ; an ob-ject of class \T1/zi4/m/n/10 "rle" \T1/ptm/m/n/10 for [466] [467] [468] [469] [470] [471] [472] [473] [474] [475] [476] [477] [478] [479] [480] [481] [482] Underfull \hbox (badness 2261) in paragraph at lines 33793--33798 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 strip.white \T1/ptm/m/n/10 is of length 1, i t ap-plies to all fields; oth-er-wise, if [483] Underfull \hbox (badness 10000) in paragraph at lines 33820--33826 []\T1/ptm/m/n/10 The es-capes which are in-ter-preted are the con-trol char-ac- ters Underfull \hbox (badness 1484) in paragraph at lines 33820--33826 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 \a,\b,\f,\n,\r,\t,\v\T1/ptm/m/n/10 ' and oc-tal and hex-adec-i-mal rep-re-sen-ta-tions like [484] [485] [486] [487] [488] [489] [490] [491] [492] [493] [494] [495] [496] [497] [498] [499] [500] [501] [502] [503] [504] [505] [506] [507] [508] [509] [510] [511] [512] [513] [514] [515] [516] [517] [518] [519] Underfull \hbox (badness 10000) in paragraph at lines 36419--36421 [][][]$\T1/zi4/m/n/10 https : / / pubs . opengroup . org / onlinepubs / 9699919 799 / functions / snprintf . html$[][] \T1/ptm/m/n/10 for [520] [521] [522] [523] [524] [525] [526] [527] [528] Underfull \hbox (badness 1072) in paragraph at lines 37016--37020 []\T1/ptm/m/n/10 On front-ends which sup-port it, the com-mands his-tory is rea d from the file spec-i-fied by Underfull \hbox (badness 10000) in paragraph at lines 37021--37025 []\T1/ptm/m/n/10 The command-line op-tion `\T1/zi4/m/n/10 --vanilla\T1/ptm/m/n/ 10 ' im-plies `\T1/zi4/m/n/10 --no-site-file\T1/ptm/m/n/10 ', `\T1/zi4/m/n/10 - -no-init-file\T1/ptm/m/n/10 ', Underfull \hbox (badness 10000) in paragraph at lines 37051--37057 []\T1/ptm/m/n/10 On sys-tems with sub-architectures (mainly Win-dows), the file s `\T1/zi4/m/n/10 Renviron.site\T1/ptm/m/n/10 ' Underfull \hbox (badness 10000) in paragraph at lines 37051--37057 \T1/ptm/m/n/10 and `\T1/zi4/m/n/10 Rprofile.site\T1/ptm/m/n/10 ' are looked for first in architecture-specific di-rec-to-ries, Underfull \hbox (badness 1320) in paragraph at lines 37051--37057 \T1/ptm/m/n/10 e.g. `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/i386/R environ.site\T1/ptm/m/n/10 '. And e.g. `\T1/zi4/m/n/10 .Renviron.i386\T1/ptm/m/ n/10 ' will be used in Underfull \hbox (badness 3009) in paragraph at lines 37063--37070 []\T1/ptm/m/n/10 On Unix ver-sions of \T1/phv/m/n/10 R \T1/ptm/m/n/10 there is also a file `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/n/10 /etc/Renviron\T1/pt m/m/n/10 ' which is read Underfull \hbox (badness 1038) in paragraph at lines 37063--37070 \T1/ptm/m/n/10 very early in the start-up pro-cess-ing. It con-tains en-vi-ron- ment vari-ables set by \T1/phv/m/n/10 R \T1/ptm/m/n/10 in the Underfull \hbox (badness 2573) in paragraph at lines 37063--37070 \T1/ptm/m/n/10 con-fig-ure pro-cess. Val-ues in that file can be over-rid-den i n site or user en-vi-ron-ment Underfull \hbox (badness 1917) in paragraph at lines 37063--37070 \T1/ptm/m/n/10 files: do not change `[][]\T1/ptm/m/sl/10 R_HOME[][][]\T1/zi4/m/ n/10 /etc/Renviron\T1/ptm/m/n/10 ' it-self. Note that this is dis-tinct from [529] [530] [531] [532] Underfull \hbox (badness 2644) in paragraph at lines 37295--37299 []\T1/ptm/m/n/10 alternative to \T1/zi4/m/n/10 exprs \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 ...\T1/ptm/m/n/10 : an `expression-like' ob-ject, typ-i-cally an [533] [534] Underfull \hbox (badness 1142) in paragraph at lines 37447--37453 []\T1/ptm/m/n/10 A char-ac-ter string. The de-fault for the \T1/zi4/m/n/10 form at \T1/ptm/m/n/10 meth-ods is \T1/zi4/m/n/10 "%Y-%m-%d [535] [536] [537] [538] [539] [540] [541] [542] [543] [544] [545] [546] [547] [548] [549] [550] [551] [552] Underfull \hbox (badness 1565) in paragraph at lines 38724--38726 []\T1/ptm/m/n/10 integer code used in \T1/zi4/m/n/10 quantile(*,type=quantile.t ype) \T1/ptm/m/n/10 for the de-fault [553] [554] [555] [556] [557] [558] [559] [560] [561] Underfull \hbox (badness 1137) in paragraph at lines 39314--39320 []\T1/ptm/m/n/10 This ex-pands tilde (see [][]tilde ex-pan-sion[][][]) and wild -cards in file paths. For pre-cise de-tails Underfull \hbox (badness 4967) in paragraph at lines 39333--39338 []\T1/ptm/m/n/10 If a file-name starts with \T1/zi4/m/n/10 . \T1/ptm/m/n/10 thi s may need to be matched ex-plic-itly: for ex-am-ple [562] [563] Underfull \hbox (badness 1616) in paragraph at lines 39446--39451 \T1/zi4/m/n/10 system("id") \T1/ptm/m/n/10 is much more portable on Unix-alikes , pro-vided only the POSIX op-tions [564] [565] [566] [567] [568] [569] [570] [571] Underfull \hbox (badness 1472) in paragraph at lines 39979--39982 []\T1/ptm/m/n/10 logical. If \T1/zi4/m/n/10 TRUE\T1/ptm/m/n/10 , func-tions kee p their source in-clud-ing com-ments, see [572] [573] [574] [575] [576] [577] [578] [579] [580] [581] [582] [583] [584] Underfull \hbox (badness 10000) in paragraph at lines 40898--40902 []\T1/ptm/m/n/10 On 64-bit plat-forms \T1/zi4/m/n/10 bin \T1/ptm/m/n/10 can hav e $\OT1/cmr/m/n/10 2[]$ \T1/ptm/m/n/10 or more el-e-ments (i.e., \T1/zi4/m/n/10 length(bin) > [585] [586] [587] [588] Underfull \hbox (badness 10000) in paragraph at lines 41149--41152 [][][]\T1/zi4/m/n/10 getTaskCallbackNames[][][] [][]taskCallbackManager[][][] [ ][]$https : / / developer . r-[]project . org / [589] [590] [591] Underfull \hbox (badness 10000) in paragraph at lines 41333--41337 [][][]\T1/zi4/m/n/10 addTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 r emoveTaskCallback[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 taskCallbackManager[ ][][]\T1/ptm/m/n/10 \ [][]$\T1/zi4/m/n/10 https : / / developer . [592] [593] [594] [595] [596] [597] [598] [599] Underfull \hbox (badness 10000) in paragraph at lines 41956--41959 [][][]$\T1/zi4/m/n/10 https : / / en . wikipedia . org / wiki / Time _ zone$[][ ] \T1/ptm/m/n/10 and [][]$\T1/zi4/m/n/10 https : / / data . iana . org / time-[ ]zones / [600] [601] [602] [603] [604] [605] [606] [607] [608] [609] [610] [611] [612] Underfull \hbox (badness 1990) in paragraph at lines 42878--42886 []\T1/zi4/m/n/10 try \T1/ptm/m/n/10 eval-u-ates an ex-pres-sion and traps any e r-rors that oc-cur dur-ing the eval-u-a-tion. If Underfull \hbox (badness 4846) in paragraph at lines 42878--42886 \T1/ptm/m/n/10 an er-ror oc-curs then the er-ror mes-sage is printed to the [][ ]\T1/zi4/m/n/10 stderr[][][] \T1/ptm/m/n/10 con-nec-tion un-less [613] [614] [615] [616] [617] [618] [619] [620] Underfull \hbox (badness 1917) in paragraph at lines 43383--43390 []\T1/ptm/m/n/10 When a func-tion call-ing \T1/zi4/m/n/10 UseMethod("fun") \T1/ ptm/m/n/10 is ap-plied to an ob-ject with class at-tribute [621] [622] [623] [624] [625] [626] Underfull \hbox (badness 2452) in paragraph at lines 43835--43841 [][][]\T1/zi4/m/n/10 file[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.access[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.append[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 file.copy[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.create[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 file.exists[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/n/10 file.info[][][]\T1/ptm/m/n/10 , [627] [628] [629] [630] [631] [632] Underfull \hbox (badness 3668) in paragraph at lines 44209--44211 []\T1/ptm/m/n/10 logical, in-di-cat-ing if the call should be out-put im-me-di- ately, even if [633] Underfull \hbox (badness 2401) in paragraph at lines 44339--44343 []\T1/ptm/m/n/10 See the de-scrip-tion of [][]\T1/zi4/m/n/10 options[][][]("war n") \T1/ptm/m/n/10 for the cir-cum-stances un-der which there is a [634] [635] [636] Underfull \hbox (badness 2111) in paragraph at lines 44528--44533 \T1/ptm/m/n/10 If [][]\T1/zi4/m/n/10 names[][][](.dimnames) \T1/ptm/m/n/10 is n ot empty, these are used as col-umn names. Underfull \hbox (badness 10000) in paragraph at lines 44549--44554 []\T1/ptm/m/n/10 If \T1/zi4/m/n/10 arr.ind == TRUE \T1/ptm/m/n/10 and \T1/zi4/m /n/10 x \T1/ptm/m/n/10 is an [][]\T1/zi4/m/n/10 array[][][] \T1/ptm/m/n/10 (has a [][]\T1/zi4/m/n/10 dim[][][] \T1/ptm/m/n/10 at-tribute), the re-sult is [637] [638] [639] [640] Underfull \hbox (badness 4001) in paragraph at lines 44774--44776 []\T1/ptm/m/n/10 Thomas Lum-ley (2003) \T1/ptm/m/it/10 Stan-dard non-stan-dard eval-u-a-tion rules\T1/ptm/m/n/10 . [][]$\T1/zi4/m/n/10 https : / / developer . [641] [642] [643] [644] [645] Underfull \hbox (badness 5417) in paragraph at lines 45137--45141 []\T1/zi4/m/n/10 .packages() \T1/ptm/m/n/10 re-turns the names of the cur-rentl y at-tached pack-ages \T1/ptm/m/it/10 in-vis-i-bly \T1/ptm/m/n/10 whereas [646] Underfull \hbox (badness 10000) in paragraph at lines 45198--45202 []\T1/zi4/m/n/10 .standard_regexps \T1/ptm/m/n/10 re-turns a list of `stan-dard ' reg-exps, in-clud-ing el-e-ments named [647]) (./compiler-pkg.tex [648] Chapter 2. [649] [650] [651] [652]) (./datasets-pkg.tex Chapter 3. [653] [654] [655] [656] [657] [658] Underfull \vbox (badness 1472) has occurred while \output is active [659] [660] [661] [662] [663] [664] [665] [666] [667] [668] Underfull \hbox (badness 1097) in paragraph at lines 1037--1041 []\T1/ptm/m/n/10 MacDonell, W.R. (1902). On crim-i-nal an-thro-pom-e-try and th e iden-ti-fi-ca-tion of crim-i-nals. [669] [670] [671] [672] [673] [674] [675] [676] [677] [678] [679] [680] [681] [682] [683] [684] [685] [686] [687] [688] [689] Overfull \vbox (4.26088pt too high) has occurred while \output is active [690] [691] [692] [693] [694] [695] Overfull \vbox (13.87083pt too high) has occurred while \output is active [696] Underfull \vbox (badness 2376) has occurred while \output is active [697] [698] [699] [700] [701] [702] [703] [704] [705] [706] [707] [708] [709] [710] [711] [712] Overfull \vbox (10.49593pt too high) has occurred while \output is active [713] Overfull \vbox (15.49593pt too high) has occurred while \output is active [714] [715] [716] [717] [718] [719] [720] [721] [722] [723] [724] [725] [726] [727] [728]) (./grDevices-pkg.tex Chapter 4. [729] [730] [731] [732] Underfull \hbox (badness 3158) in paragraph at lines 282--286 []\T1/ptm/m/n/10 numeric vec-tor of length 3, \T1/zi4/m/n/10 c(mi,ma,n.)\T1/ptm /m/n/10 , with iden-ti-cal mean-ing to Underfull \hbox (badness 10000) in paragraph at lines 298--303 []\T1/ptm/m/n/10 Apart from that, [][]\T1/zi4/m/n/10 axisTicks[][][]() \T1/ptm/ m/n/10 just calls the C func-tion \T1/zi4/m/n/10 CreateAtVector() \T1/ptm/m/n/1 0 in Underfull \hbox (badness 1852) in paragraph at lines 298--303 \T1/ptm/m/n/10 `\T1/zi4/m/n/10 /src/main/plot.c\T1/ptm/m/n/10 ' which is also called by the base \T1/ptm/b/n/10 graph-ics \T1/ptm/m/n/10 pack-age func-t ion [733] [734] [735] [736] [737] [738] [739] [740] [741] Underfull \hbox (badness 1424) in paragraph at lines 895--897 [][][]\T1/zi4/m/n/10 NA[][][] \T1/ptm/m/n/10 (as in-te-ger or char-ac-ter) and \T1/zi4/m/n/10 "NA" \T1/ptm/m/n/10 mean trans-par-ent, which can also be spec-i -fied as [742] [743] [744] [745] [746] Underfull \hbox (badness 5175) in paragraph at lines 1189--1191 []\T1/ptm/m/n/10 There is cur-rently no doc-u-men-ta-tion about the al-go-rithm . The source code is in [747] [748] Underfull \hbox (badness 2512) in paragraph at lines 1308--1310 []\T1/ptm/m/n/10 For the white points [][]$\T1/zi4/m/n/10 https : / / web . arc hive . org / web / 20190613001950 / http : / / efg2 . com / [749] Underfull \hbox (badness 1852) in paragraph at lines 1402--1405 []\T1/zi4/m/n/10 densCols \T1/ptm/m/n/10 com-putes and re-turns the set of col- ors that will be used in plot-ting, call-ing [750] [751] [752] Underfull \hbox (badness 1490) in paragraph at lines 1608--1613 \T1/ptm/m/n/10 by [][]\T1/zi4/m/n/10 rasterImage[][][] \T1/ptm/m/n/10 and [][]\ T1/zi4/m/n/10 grid.raster[][][]\T1/ptm/m/n/10 ? Pos-si-ble val-ues \T1/zi4/m/n/ 10 "no"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "yes" \T1/ptm/m/n/10 and [753] [754] [755] [756] [757] [758] Underfull \hbox (badness 1325) in paragraph at lines 2014--2024 \T1/zi4/m/n/10 "png48"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngmono"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pnggray"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "pngalpha"\T1/ptm/m/n/ 10 , \T1/zi4/m/n/10 "bmp16"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "bmp16m" "bmp256"\T1 /ptm/m/n/10 , \T1/zi4/m/n/10 "bmp32b"\T1/ptm/m/n/10 , [759] Underfull \hbox (badness 10000) in paragraph at lines 2126--2128 []\T1/ptm/m/n/10 The de-fault value when a de-vice is opened is taken from the set-ting of [760] [761] [762] Underfull \hbox (badness 6758) in paragraph at lines 2305--2308 []\T1/ptm/m/n/10 Some other op-tions which can be use-ful (see your Ghostscript doc-u-men-ta-tion) are [763] [764] [765] [766] [767] [768] [769] [770] [771] Underfull \hbox (badness 10000) in paragraph at lines 2914--2915 Underfull \vbox (badness 10000) has occurred while \output is active [772] [773] [774] [775] [776] [777] [778] [779] Underfull \hbox (badness 10000) in paragraph at lines 3488--3493 []\T1/zi4/m/n/10 nclass.FD \T1/ptm/m/n/10 uses the Freedman-Diaconis choice bas ed on the inter-quartile range [780] [781] [782] [783] [784] [785] [786] Underfull \vbox (badness 10000) has occurred while \output is active [787] Underfull \hbox (badness 10000) in paragraph at lines 3987--3990 []\T1/ptm/m/n/10 For use with \T1/zi4/m/n/10 onefile = FALSE \T1/ptm/m/n/10 giv e a C in-te-ger for-mat such as [788] [789] [790] [791] [792] [793] [794] [795] [796] [797] Underfull \hbox (badness 10000) in paragraph at lines 4724--4729 [][][]$\T1/zi4/m/n/10 https : / / www . adobe . com / content / dam / acom / en / devnet / actionscript / articles / PLRM . pdf$[][] Underfull \hbox (badness 10000) in paragraph at lines 4724--4729 \T1/ptm/m/n/10 or PDF [][]$\T1/zi4/m/n/10 https : / / www . adobe . com / conte nt / dam / acom / en / devnet / acrobat / pdfs / pdf _ Underfull \hbox (badness 1881) in paragraph at lines 4724--4729 \T1/zi4/m/n/10 reference _ 1-[]7 . pdf$[][] \T1/ptm/m/n/10 and in dec-i-mal, oc -tal and hex at [][]$\T1/zi4/m/n/10 https : / / www . stat . auckland . ac . [798] Underfull \vbox (badness 10000) has occurred while \output is active [799] [800] Underfull \hbox (badness 1584) in paragraph at lines 4880--4882 []\T1/ptm/m/n/10 For type \T1/zi4/m/n/10 "cairo"\T1/ptm/m/n/10 , the \T1/zi4/m/ n/10 symbolfamily \T1/ptm/m/n/10 ar-gu-ment can be sup-plied. See Underfull \hbox (badness 1067) in paragraph at lines 4884--4891 \T1/ptm/m/n/10 The lat-ter will only be avail-able if the sys-tem was com-piled with sup- [801] [802] [803] [804] Underfull \hbox (badness 1377) in paragraph at lines 5190--5195 []\T1/ptm/m/n/10 a char-ac-ter string de-scrib-ing the color model: cur-rently al-lowed val-ues [805] Underfull \hbox (badness 1418) in paragraph at lines 5266--5273 \T1/ptm/m/n/10 it is one of \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4 /m/n/10 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/ zi4/m/n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm /m/n/10 , Underfull \hbox (badness 1755) in paragraph at lines 5284--5286 []\T1/ptm/m/n/10 Another type of fam-ily makes use of CID-keyed fonts for East Asian lan-guages -- see [806] Underfull \hbox (badness 1377) in paragraph at lines 5395--5400 []\T1/ptm/m/n/10 Color mod-els pro-vided for back-wards com-pat-i-bil-ity are \ T1/zi4/m/n/10 "rgb" \T1/ptm/m/n/10 (which is RGB+gray) and [807] Underfull \hbox (badness 7344) in paragraph at lines 5464--5466 []\T1/ptm/m/n/10 Support for Com-puter Mod-ern fonts is based on a con-tri-bu-t ion by Brian D'Urso [808] [809] Underfull \hbox (badness 2035) in paragraph at lines 5602--5611 []\T1/ptm/m/n/10 Mappings for a num-ber of stan-dard Adobe fonts (and URW equiv -a-lents) are also pro- Underfull \hbox (badness 10000) in paragraph at lines 5602--5611 \T1/ptm/m/n/10 vided: \T1/zi4/m/n/10 "AvantGarde"\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 "Bookman"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Courier"\T1/ptm/m/n/10 , \T1/zi4/m/ n/10 "Helvetica"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Helvetica-Narrow"\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 5602--5611 \T1/zi4/m/n/10 "NewCenturySchoolbook"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "Palatino" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "Times"\T1/ptm/m/n/10 ; \T1/zi4/m/n/10 "URWG othic"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "URWBookman"\T1/ptm/m/n/10 , [810] [811] Underfull \hbox (badness 10000) in paragraph at lines 5670--5677 []\T1/zi4/m/n/10 BousungEG-Light-GB \T1/ptm/m/n/10 can be found at [][]$\T1/zi4 /m/n/10 ftp : / / ftp . gnu . org / pub / non-[]gnu / Underfull \hbox (badness 2189) in paragraph at lines 5670--5677 \T1/zi4/m/n/10 chinese-[]fonts-[]truetype/$[][]\T1/ptm/m/n/10 . Ken Lunde's CJK V re-sources are at [][]$\T1/zi4/m/n/10 ftp : / / ftp . oreilly . [812] [813] Underfull \hbox (badness 1546) in paragraph at lines 5812--5820 []\T1/ptm/m/n/10 arguments \T1/zi4/m/n/10 onefile\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 family\T1/ptm/m/n/10 , \T1/zi4/m/n/10 title\T1/ptm/m/n/10 , \T1/zi4/m/n/10 fo nts\T1/ptm/m/n/10 , \T1/zi4/m/n/10 encoding\T1/ptm/m/n/10 , \T1/zi4/m/n/10 bg\T 1/ptm/m/n/10 , \T1/zi4/m/n/10 fg\T1/ptm/m/n/10 , \T1/zi4/m/n/10 width\T1/ptm/m/ n/10 , [814] [815] [816] [817] [818] [819] [820] [821] Underfull \hbox (badness 10000) in paragraph at lines 6350--6353 []\T1/zi4/m/n/10 rgb2hsv \T1/ptm/m/n/10 trans-forms col-ors from RGB space (red /green/blue) into HSV space [822] [823] [824] [825] [826] [827] [828] [829] [830] [831] [832] [833] Underfull \hbox (badness 1189) in paragraph at lines 7175--7177 []\T1/ptm/m/n/10 for cairo types, the type of anti-aliasing (if any) to be used . One of [834] Underfull \hbox (badness 10000) in paragraph at lines 7280--7282 []\T1/zi4/m/n/10 "-*-mincho-%s-%s-*-*-%d-*-*-*-*-*-*-*" \T1/ptm/m/n/10 for CJK lan-guages and [835] [836] [837] [838] [839] Underfull \hbox (badness 3780) in paragraph at lines 7594--7600 []\T1/ptm/m/n/10 the font fam-ily to be used. This must be one of \T1/zi4/m/n/1 0 "AvantGarde"\T1/ptm/m/n/10 , [840] [841] Underfull \hbox (badness 2680) in paragraph at lines 7796--7798 []\T1/ptm/m/n/10 multiplicities (pos-i-tive in-te-gers); i.e., \T1/zi4/m/n/10 n umber[i] \T1/ptm/m/n/10 is the mul-ti-plic-ity of [842] [843] [844]) (./graphics-pkg.tex Chapter 5. [845] [846] [847] [848] [849] [850] [851] [852] [853] [854] [855] [856] [857] [858] [859] Underfull \vbox (badness 10000) has occurred while \output is active [860] [861] [862] [863] [864] [865] Underfull \hbox (badness 4634) in paragraph at lines 1355--1358 [][][]\T1/zi4/m/n/10 boxplot.default[][][] \T1/ptm/m/n/10 which al-ready works nowa-days with data.frames; [][]\T1/zi4/m/n/10 boxplot.formula[][][]\T1/ptm/m/n /10 , [866] [867] [868] [869] [870] [871] [872] [873] [874] [875] [876] [877] [878] [879] [880] Underfull \hbox (badness 1728) in paragraph at lines 2328--2330 []\T1/ptm/m/n/10 a string in-di-cat-ing the x-axis style; use \T1/zi4/m/n/10 "n " \T1/ptm/m/n/10 to sup-press and see also [881] Underfull \hbox (badness 1009) in paragraph at lines 2421--2428 \T1/ptm/m/n/10 be in as-cend-ing or-der. (The rest of this de-scrip-tion does n ot ap-ply to [882] [883] [884] [885] [886] [887] [888] [889] [890] [891] [892] [893] [894] [895] [896] [897] [898] [899] [900] [901] [902] Underfull \vbox (badness 10000) has occurred while \output is active [903] [904] [905] [906] [907] [908] [909] [910] [911] [912] [913] [914] Underfull \hbox (badness 3229) in paragraph at lines 4596--4601 []\T1/ptm/m/n/10 a char-ac-ter string in-di-cat-ing if log-a-rith-mic axes are to be used, see [915] [916] [917] [918] Underfull \hbox (badness 10000) in paragraph at lines 5026--5032 []\T1/ptm/b/it/10 R.O.\T1/ptm/m/n/10 ; size of de-fault char-ac-ter \T1/zi4/m/n /10 (width,height) \T1/ptm/m/n/10 in user co-or-di-nate units. Underfull \hbox (badness 5908) in paragraph at lines 5026--5032 \T1/zi4/m/n/10 par("cxy") \T1/ptm/m/n/10 is \T1/zi4/m/n/10 par("cin")/par("pin" ) \T1/ptm/m/n/10 scaled to user co-or-di-nates. Note that [919] [920] Underfull \hbox (badness 10000) in paragraph at lines 5157--5160 [921 ] Underfull \hbox (badness 10000) in paragraph at lines 5218--5220 [922 ] [923] Underfull \hbox (badness 10000) in paragraph at lines 5408--5410 []\T1/ptm/m/n/10 The five stan-dard dash-dot line types (\T1/zi4/m/n/10 lty = 2 :6\T1/ptm/m/n/10 ) cor-re-spond to [924] [925] [926] [927] [928] [929] [930] [931]pdfTeX warning (ext4): destinati on with the same identifier (name{Rfn.plot}) has been already used, duplicate i gnored \relax l.5890 \aliasA{plot}{plot.default}{plot} [932] [933] [934] [935] [936] [937] [938] [939] [940] [941] [942] [943] [944] Overfull \hbox (31.57222pt too wide) in paragraph at lines 6795--6796 [][] [945 ] [946] Underfull \vbox (badness 10000) has occurred while \output is active [947] [948] [949] [950] [951] [952] [953] [954] [955] [956] [957] Underfull \hbox (badness 2012) in paragraph at lines 7620--7623 []\T1/ptm/m/n/10 For each \T1/zi4/m/n/10 i\T1/ptm/m/n/10 , a line seg-ment is d rawn be-tween the point \T1/zi4/m/n/10 (x0[i],y0[i]) \T1/ptm/m/n/10 and the poi nt [958] [959] [960] [961] [962] [963] [964] [965] [966] [967] [968] [969] [970] [971] [972] [973] [974] [975] [976] Underfull \hbox (badness 10000) in paragraph at lines 8886--8888 []\T1/ptm/m/n/10 Sub-title (at bot-tom) us-ing font, size and color Underfull \hbox (badness 10000) in paragraph at lines 8888--8890 []\T1/ptm/m/n/10 X axis la-bel us-ing font, size and color [977]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.unit s}) has been already used, duplicate ignored \relax l.8968 \HeaderA{units}{Graphical Units}{units} [978] [979] [980] [981]) (./grid-pkg.tex [982] Chapter 6. [983] [984] [985] [986] [987] [988] [989] [990] Underfull \hbox (badness 2680) in paragraph at lines 483--486 []\T1/ptm/m/n/10 Note that \T1/zi4/m/n/10 preDrawDetails \T1/ptm/m/n/10 and \T1 /zi4/m/n/10 postDrawDetails \T1/ptm/m/n/10 are also called in the cal-cu-la-tio n of [991] [992] [993] [994] [995] [996] [997] [998] [999] Underfull \hbox (badness 4279) in paragraph at lines 1064--1073 [][][]\T1/ptm/m/n/10 Grid[][][], [][]\T1/zi4/m/n/10 pushViewport[][][]\T1/ptm/m /n/10 , [][]\T1/zi4/m/n/10 popViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 downViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 seekViewport[][][]\T1/pt m/m/n/10 , [][]\T1/zi4/m/n/10 upViewport[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/ 10 unit[][][]\T1/ptm/m/n/10 , [1000] [1001] [1002] [1003] [1004] [1005] [1006] [1007] [1008] [1009] [1010] [1011] [1012] [1013] [1014] [1015] [1016] [1017] [1018] [1019] [1020] [1021] [1022] [1023] [1024] [1025] [1026] [1027] [1028] [1029] [1030] [1031] [1032] [1033] [1034] [1035] [1036] [1037] [1038] [1039] Underfull \vbox (badness 10000) has occurred while \output is active [1040] [1041] [1042] [1043] [1044] [1045] [1046] [1047] [1048] [1049] [1050] [1051] [1052] Underfull \hbox (badness 1067) in paragraph at lines 4489--4492 []\T1/ptm/m/n/10 Both func-tions cre-ate a seg-ments grob (a graph-i-cal ob-jec t de-scrib-ing seg-ments), but only [1053] [1054] [1055] [1056] Underfull \hbox (badness 7256) in paragraph at lines 4734--4736 []\T1/ptm/m/n/10 A char-ac-ter or [][]ex-pres-sion[][][] vec-tor. Other ob-ject s are co-erced by [1057] [1058] [1059] [1060] [1061] [1062] [1063] [1064] [1065] [1066] [1067] [1068] [1069] [1070] [1071] [1072] [1073] [1074] [1075] [1076] [1077] [1078] [1079] [1080] [1081] [1082] [1083] [1084] [1085] Underfull \hbox (badness 1824) in paragraph at lines 6606--6609 []\T1/ptm/m/n/10 This can be use-ful for re-turn-ing to your start-ing point by do-ing some-thing like \T1/zi4/m/n/10 depth [1086] [1087] [1088] [1089]) (./methods-pkg.tex [1090] Chapter 7. [1091] [1092] [1093] [1094] [1095] [1096] [1097] [1098] Underfull \vbox (badness 10000) has occurred while \output is active [1099] Underfull \vbox (badness 10000) has occurred while \output is active [1100] [1101] [1102] [1103] [1104] [1105] [1106] [1107] [1108] Underfull \hbox (badness 2237) in paragraph at lines 1385--1387 []\T1/ptm/m/n/10 The class \T1/zi4/m/n/10 "className" \T1/ptm/m/n/10 ex-tends \ T1/zi4/m/n/10 "character" \T1/ptm/m/n/10 and has a slot \T1/zi4/m/n/10 "package "\T1/ptm/m/n/10 , also of class [1109] [1110] [1111] [1112] [1113] [1114] [1115] [1116] Underfull \hbox (badness 2181) in paragraph at lines 1932--1939 []\T1/ptm/m/n/10 Two vir-tual classes are sup-plied to test for ref-er-ence ob- jects: \T1/zi4/m/n/10 is(x,"refClass") \T1/ptm/m/n/10 tests Underfull \hbox (badness 10000) in paragraph at lines 1981--1986 []\T1/ptm/m/n/10 The ar-gu-ment to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/10 c an be an ob-ject of class Underfull \hbox (badness 1038) in paragraph at lines 1981--1986 \T1/ptm/m/n/10 file name is passed to \T1/zi4/m/n/10 insertSource \T1/ptm/m/n/1 0 it calls \T1/zi4/m/n/10 evalSource \T1/ptm/m/n/10 to ob-tain the [1117] [1118] [1119] Underfull \hbox (badness 2213) in paragraph at lines 2214--2219 []\T1/ptm/m/n/10 To re-strict the search to classes in a par-tic-u-lar pack-age , use \T1/zi4/m/n/10 where = [1120] [1121] [1122] [1123] [1124] Underfull \hbox (badness 10000) in paragraph at lines 2574--2577 []\T1/ptm/m/n/10 As you might ex-pect [][]\T1/zi4/m/n/10 setGeneric[][][] \T1/p tm/m/n/10 and [][]\T1/zi4/m/n/10 setGroupGeneric[][][] \T1/ptm/m/n/10 cre-ate o b-jects of class [1125] [1126] Underfull \hbox (badness 1132) in paragraph at lines 2714--2718 []\T1/ptm/m/n/10 In \T1/zi4/m/n/10 getGenerics\T1/ptm/m/n/10 , if \T1/zi4/m/n/1 0 TRUE\T1/ptm/m/n/10 , the \T1/zi4/m/n/10 package \T1/ptm/m/n/10 slot of the re -turned re-sult is in Underfull \hbox (badness 1033) in paragraph at lines 2746--2751 \T1/ptm/m/n/10 In ad-di-tion, \T1/zi4/m/n/10 removeGeneric \T1/ptm/m/n/10 re-mo ves the func-tion it-self; \T1/zi4/m/n/10 removeMethods \T1/ptm/m/n/10 re-store s the [1127] [1128] [1129] [1130] [1131] [1132] [1133] Underfull \hbox (badness 1102) in paragraph at lines 3303--3305 []\T1/zi4/m/n/10 getPackageName \T1/ptm/m/n/10 re-turns the character-string na me of the pack-age (with-out the ex-tra-ne-ous [1134] [1135] [1136] [1137] [1138] Underfull \hbox (badness 10000) in paragraph at lines 3634--3639 []\T1/ptm/m/n/10 The \T1/zi4/m/n/10 initialize \T1/ptm/m/n/10 method for these classes takes spe-cial ar-gu-ments Underfull \hbox (badness 10000) in paragraph at lines 3642--3651 []\T1/ptm/m/n/10 The [1139] [1140] Underfull \hbox (badness 10000) in paragraph at lines 3762--3763 [] \T1/zi4/m/n/10 Pos <-setClass("Pos",slots = c(latitude = "numeric",longitude = "numeric",altitude [1141] [1142] [1143] [1144] [1145] [1146] [1147] [1148] [1149] Underfull \hbox (badness 1769) in paragraph at lines 4472--4478 []\T1/ptm/m/n/10 class [][]\T1/zi4/m/n/10 MethodsList[][][] \T1/ptm/m/n/10 for the ob-jects defin-ing sets of meth-ods as-so-ci-ated with a par-tic-u-lar Underfull \hbox (badness 1939) in paragraph at lines 4472--4478 \T1/zi4/m/n/10 MethodDefinition\T1/ptm/m/n/10 , or an ex-ten-sion. Class [][]\T 1/zi4/m/n/10 MethodWithNext[][][] \T1/ptm/m/n/10 for an ex-ten-sion used by [1150] [1151] [1152] [1153] [1154] [1155] [1156] [1157] [1158] Underfull \vbox (badness 10000) has occurred while \output is active [1159] Underfull \vbox (badness 10000) has occurred while \output is active [1160] [1161] [1162] Underfull \hbox (badness 4036) in paragraph at lines 5437--5440 []\T1/ptm/m/n/10 Object of class \T1/zi4/m/n/10 "PossibleMethod" \T1/ptm/m/n/10 the method to use in re-sponse to a [1163] Underfull \hbox (badness 3803) in paragraph at lines 5512--5514 []\T1/ptm/m/n/10 arguments to spec-ify prop-er-ties of the new ob-ject, to be p assed to [1164] [1165] [1166] Underfull \hbox (badness 1087) in paragraph at lines 5744--5749 []\T1/ptm/m/n/10 In ad-di-tion, the cur-rently avail-able gener-ics with meth-o ds for this class are found (us-ing [1167] [1168] [1169] [1170] [1171] [1172] [1173] [1174] Underfull \hbox (badness 1675) in paragraph at lines 6451--6457 \T1/ptm/m/n/10 can be con-verted ex-plic-itly as \T1/zi4/m/n/10 externalRefMeth od(f)\T1/ptm/m/n/10 , which re-turns an ob-ject of class [1175] [1176] [1177] [1178] Underfull \vbox (badness 10000) has occurred while \output is active [1179] [1180] [1181]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.S4}) has been already used, duplicate ignored \relax l.6973 \aliasA{S4}{S3Part}{S4} [1182] [1183] [1184]pdfTeX warning (ext4): desti nation with the same identifier (name{Rfn.Complex}) has been already used, dupl icate ignored \relax l.7229 \aliasA{Complex}{S4groupGeneric}{Complex} pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.Logic}) has been already used, duplicate ignored \relax l.7231 \aliasA{Logic}{S4groupGeneric}{Logic} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Math}) has been already used, duplicate igno red \relax l.7232 \aliasA{Math}{S4groupGeneric}{Math} pdfTeX warning (ext4): destination wi th the same identifier (name{Rfn.Ops}) has been already used, duplicate ignored \relax l.7234 \aliasA{Ops}{S4groupGeneric}{Ops} pdfTeX warning (ext4): destination with the same identifier (name{Rfn.Summary}) has been already used, duplicate ignor ed \relax l.7235 \aliasA{Summary}{S4groupGeneric}{Summary} [1185] Underfull \hbox (badness 2050) in paragraph at lines 7296--7300 []\T1/ptm/m/n/10 The mem-bers of the group de-fined by a par-tic-u-lar generic can be ob-tained by call-ing [1186] [1187] Underfull \hbox (badness 1286) in paragraph at lines 7484--7486 []\T1/ptm/m/n/10 for \T1/zi4/m/n/10 .selectSuperClasses() \T1/ptm/m/n/10 only, a [][]\T1/zi4/m/n/10 list[][][] \T1/ptm/m/n/10 of class ex-ten-sions, typ-i-cal ly [1188] [1189] [1190] [1191] [1192] [1193] [1194] [1195] [1196] [1197] [1198] [1199] [1200] [1201] [1202] [1203] [1204] [1205] [1206] [1207] [1208] [1209] [1210] [1211] [1212] [1213] [1214] [1215] [1216] [1217] [1218] [1219] [1220] Underfull \hbox (badness 1137) in paragraph at lines 10011--10019 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/n/10 ne w("signature",functionDef,...)\T1/ptm/m/n/10 . The [1221] [1222] [1223] [1224] [1225] [1226] [1227] Underfull \hbox (badness 1852) in paragraph at lines 10564--10568 []\T1/ptm/m/n/10 Each of the classes ex-tends the cor-re-spond-ing un-traced cl ass, from the data part; e.g., [1228] [1229] [1230]) (./parallel-pkg.tex Chapter 8. Underfull \hbox (badness 5490) in paragraph at lines 14--16 []\T1/ptm/m/n/10 There is sup-port for mul-ti-ple RNG streams with the `\T1/zi4 /m/n/10 "L\TS1/zi4/m/n/10 '\T1/zi4/m/n/10 Ecuyer-CMRG"\T1/ptm/m/n/10 ' [][]RNG[ ][][]: see [1231] [1232] [1233] [1234] [1235] [1236] [1237] [1238] [1239] [1240] [1241] [1242] [1243] [1244] [1245] [1246] [1247] [1248] [1249] [1250] Underfull \hbox (badness 3386) in paragraph at lines 1393--1396 []\T1/ptm/m/n/10 An in-te-ger vec-tor of length 7 as given by \T1/zi4/m/n/10 .R andom.seed \T1/ptm/m/n/10 when the [1251] [1252] [1253]) (./splines-pkg.tex [1254] Chapter 9. Underfull \hbox (badness 10000) in paragraph at lines 22--24 []\T1/ptm/m/n/10 Douglas M. Bates \T1/zi4/m/n/10 \T1/ptm/ m/n/10 and William N. Ven-ables [1255] [1256] [1257] [1258] [1259] [1260] [1261] [1262] [1263] [1264] [1265] [1266] [1267] [1268]) (./stats-pkg.tex Chapter 10. [1269] [1270] [1271] [1272] [1273] [1274] [1275] [1276] [1277] [1278] [1279] [1280] [1281] Underfull \hbox (badness 1412) in paragraph at lines 882--884 []\T1/ptm/m/n/10 A fit-ted model ob-ject, for ex-am-ple from \T1/zi4/m/n/10 lm \T1/ptm/m/n/10 or \T1/zi4/m/n/10 aov\T1/ptm/m/n/10 , or a for-mula for [1282] [1283] [1284] [1285] [1286] [1287] [1288] Underfull \hbox (badness 2503) in paragraph at lines 1364--1367 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1289] [1290] [1291] Underfull \hbox (badness 10000) in paragraph at lines 1544--1548 []\T1/ptm/m/n/10 An ob-ject of class \T1/zi4/m/n/10 c("aov","lm") \T1/ptm/m/n/1 0 or for mul-ti-ple re-sponses of class [1292] [1293] [1294] [1295] [1296] [1297] [1298] [1299] [1300] [1301] [1302] [1303] [1304] [1305] [1306] [1307] [1308] [1309] [1310] [1311] [1312] [1313] [1314] [1315] [1316] [1317] [1318] [1319] Underfull \hbox (badness 2503) in paragraph at lines 3514--3517 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1320] [1321] [1322] [1323] [1324] [1325] [1326] [1327] [1328] [1329] [1330] [1331] [1332] [1333] Underfull \hbox (badness 1127) in paragraph at lines 4430--4433 []\T1/ptm/m/n/10 standardized resid-u-als, \T1/zi4/m/n/10 (observed -expected) / sqrt(V)\T1/ptm/m/n/10 , where \T1/zi4/m/n/10 V \T1/ptm/m/n/10 is the [1334] [1335] [1336] [1337] [1338] Underfull \hbox (badness 3989) in paragraph at lines 4770--4777 []\T1/ptm/m/n/10 a nu-meric vec-tor of length 2, equal to say $\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 g[]; g[]\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 , where $\OML/cmm/m/ it/10 g[] \OT1/cmr/m/n/10 = [1339] [1340] [1341] [1342] [1343] [1344] [1345] [1346] [1347] Underfull \hbox (badness 2556) in paragraph at lines 5406--5409 []\T1/ptm/m/n/10 character; par-tially matched to \T1/zi4/m/n/10 "circular"\T1/ ptm/m/n/10 , \T1/zi4/m/n/10 "open"\T1/ptm/m/n/10 , \T1/zi4/m/n/10 "filter"\T1/p tm/m/n/10 . For Underfull \hbox (badness 2932) in paragraph at lines 5423--5425 []\T1/ptm/m/n/10 Note that the usual def-i-ni-tion of con-vo-lu-tion of two se- quences \T1/zi4/m/n/10 x \T1/ptm/m/n/10 and \T1/zi4/m/n/10 y \T1/ptm/m/n/10 is given by [1348] [1349] [1350] [1351] [1352] [1353] Underfull \hbox (badness 2503) in paragraph at lines 5820--5824 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1354] [1355] [1356] [1357] [1358] [1359] [1360] [1361] [1362] [1363] [1364] [1365] [1366] Underfull \hbox (badness 7081) in paragraph at lines 6614--6617 []\T1/ptm/m/n/10 Objects of class \T1/zi4/m/n/10 "hclust" \T1/ptm/m/n/10 can be con-verted to class \T1/zi4/m/n/10 "dendrogram" \T1/ptm/m/n/10 us-ing method Underfull \hbox (badness 10000) in paragraph at lines 6618--6620 []\T1/zi4/m/n/10 rev.dendrogram \T1/ptm/m/n/10 sim-ply re-turns the den-dro-gra m \T1/zi4/m/n/10 x \T1/ptm/m/n/10 with re-versed nodes, see also [1367] [1368] [1369] [1370] [1371] [1372] [1373] [1374] [1375] [1376] [1377] [1378] Underfull \hbox (badness 10000) in paragraph at lines 7465--7468 []\T1/ptm/m/n/10 optionally, the dis-tance method used; re-sult-ing from [][]\T 1/zi4/m/n/10 dist[][][]()\T1/ptm/m/n/10 , the [1379] [1380] [1381] [1382] [1383] [1384] [1385] [1386] [1387] [1388] [1389] [1390] [1391] [1392] [1393] [1394] [1395] [1396] [1397] [1398] [1399] Underfull \vbox (badness 10000) has occurred while \output is active [1400] [1401] [1402] [1403] Underfull \hbox (badness 2626) in paragraph at lines 9144--9147 []\T1/ptm/m/n/10 Either \T1/zi4/m/n/10 "convolution" \T1/ptm/m/n/10 or \T1/zi4/ m/n/10 "recursive" \T1/ptm/m/n/10 (and can be ab-bre-vi-ated). If [1404] [1405] Underfull \hbox (badness 2503) in paragraph at lines 9251--9255 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1406] [1407] [1408] [1409] [1410] [1411] [1412] [1413] [1414] [1415] [1416] [1417] [1418] [1419] [1420] [1421] [1422] [1423] [1424] Underfull \hbox (badness 4518) in paragraph at lines 10587--10592 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1425] [1426] [1427] [1428] [1429] Underfull \hbox (badness 2142) in paragraph at lines 10948--10951 []\T1/ptm/m/n/10 positive con-ver-gence tol-er-ance $\OML/cmm/m/it/10 ^^O$\T1/p tm/m/n/10 ; the it-er-a-tions con-verge when $\OMS/cmsy/m/n/10 j\OML/cmm/m/it/1 0 dev \OMS/cmsy/m/n/10 ^^@ Underfull \hbox (badness 1253) in paragraph at lines 10967--10970 []\T1/ptm/m/n/10 When \T1/zi4/m/n/10 trace \T1/ptm/m/n/10 is true, calls to [][ ]\T1/zi4/m/n/10 cat[][][] \T1/ptm/m/n/10 pro-duce the out-put for each IWLS it- er-a-tion. Hence, [1430] Underfull \hbox (badness 1708) in paragraph at lines 11029--11033 []\T1/ptm/m/n/10 the type of resid-u-als which should be re-turned. The al-ter- na-tives are: [1431] [1432] [1433] [1434] [1435] Underfull \hbox (badness 1694) in paragraph at lines 11425--11428 []\T1/ptm/m/n/10 character vec-tors with row and col-umn la-bels to use; these de-fault to [1436] [1437] [1438] [1439] [1440] [1441] [1442] [1443]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.hat}) has been already used, dupl icate ignored \relax l.11909 \aliasA{hat}{influence.measures}{hat} [1444] [1445] Underfull \hbox (badness 1484) in paragraph at lines 12051--12053 []\T1/ptm/m/n/10 The func-tion \T1/zi4/m/n/10 hat() \T1/ptm/m/n/10 ex-ists main ly for S (ver-sion 2) com-pat-i-bil-ity; we rec-om-mend us-ing [1446] [1447] [1448] [1449] [1450] [1451] [1452] [1453] [1454] Underfull \hbox (badness 10000) in paragraph at lines 12649--12651 []\T1/ptm/m/n/10 tolerance even-tu-ally passed to [][]\T1/zi4/m/n/10 solve.defa ult[][][] \T1/ptm/m/n/10 when \T1/zi4/m/n/10 SSinit = [1455] [1456] [1457] [1458] [1459] Underfull \hbox (badness 2894) in paragraph at lines 12985--12989 []\T1/ptm/m/n/10 logical or in-te-ger num-ber, cur-rently only used in the de-f ault method [1460] [1461] [1462] [1463] [1464] [1465] [1466] [1467] [1468] [1469] [1470] [1471] Underfull \hbox (badness 4518) in paragraph at lines 13736--13741 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1472] [1473] [1474] [1475] [1476] [1477] [1478] [1479] [1480] Underfull \hbox (badness 4518) in paragraph at lines 14389--14394 []\T1/ptm/m/n/10 an op-tional data frame, list or en-vi-ron-ment (or ob-ject co -ercible by [1481] [1482] Underfull \hbox (badness 8151) in paragraph at lines 14527--14531 []\T1/ptm/m/n/10 Only for the (de-fault) case \T1/zi4/m/n/10 (surface = "interp olate",statistics = Underfull \hbox (badness 1199) in paragraph at lines 14534--14536 []\T1/ptm/m/n/10 the num-ber of it-er-a-tions used in ro-bust fit-ting, i.e. on ly if \T1/zi4/m/n/10 family \T1/ptm/m/n/10 is [1483] [1484] [1485] [1486] [1487] [1488] [1489] [1490] [1491] [1492] [1493] [1494] [1495] [1496] [1497] [1498] [1499] Underfull \hbox (badness 2503) in paragraph at lines 15607--15611 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , [1500] [1501] [1502] [1503] [1504] [1505] [1506] Underfull \hbox (badness 4621) in paragraph at lines 16120--16126 []\T1/zi4/m/n/10 model.offset \T1/ptm/m/n/10 and \T1/zi4/m/n/10 model.response \T1/ptm/m/n/10 are equiv-a-lent to \T1/zi4/m/n/10 model.extract(,"offset") \T1/ ptm/m/n/10 and [1507] [1508] [1509] [1510] [1511] [1512] [1513] [1514] [1515] [1516] [1517] [1518] [1519] [1520] [1521] [1522] [1523] [1524] [1525] [1526] [1527] [1528] [1529] [1530] [1531] [1532] [1533] Underfull \vbox (badness 10000) has occurred while \output is active [1534] [1535] [1536] [1537] [1538] [1539] [1540] [1541] [1542] [1543] [1544] [1545] [1546] Underfull \hbox (badness 1377) in paragraph at lines 18731--18736 []\T1/ptm/m/n/10 A vec-tor of scal-ing val-ues for the pa-ram-e-ters. Op-ti-miz a-tion is per-formed on Underfull \hbox (badness 1735) in paragraph at lines 18736--18739 []\T1/ptm/m/n/10 A vec-tor of step sizes for the finite-difference ap-prox-i-ma -tion to the gra-di-ent, on Underfull \hbox (badness 2343) in paragraph at lines 18749--18753 []\T1/ptm/m/n/10 Relative con-ver-gence tol-er-ance. The al-go-rithm stops if i t is un-able to re-duce Underfull \hbox (badness 3471) in paragraph at lines 18749--18753 \T1/ptm/m/n/10 the value by a fac-tor of \T1/zi4/m/n/10 reltol * (abs(val) + re ltol) \T1/ptm/m/n/10 at a step. De-faults to [1547] Underfull \hbox (badness 2662) in paragraph at lines 18757--18761 []\T1/ptm/m/n/10 The fre-quency of re-ports for the \T1/zi4/m/n/10 "BFGS"\T1/pt m/m/n/10 , \T1/zi4/m/n/10 "L-BFGS-B" \T1/ptm/m/n/10 and \T1/zi4/m/n/10 "SANN" \ T1/ptm/m/n/10 meth-ods if [1548] [1549] Underfull \vbox (badness 10000) has occurred while \output is active [1550] Overfull \hbox (15.73795pt too wide) in paragraph at lines 18982--18982 []\T1/zi4/m/n/9 ## 1-D minimization: "Brent" or optimize() being preferred.. b ut NM may be ok and "unavoidable",[] Overfull \hbox (3.75941pt too wide) in paragraph at lines 18985--18985 []\T1/zi4/m/n/9 system.time(ro <- optim(1, function(x) (x-pi)^2, control=list( warn.1d.NelderMead = FALSE)))[] [1551] [1552] [1553] [1554] [1555] [1556] [1557] Underfull \hbox (badness 1337) in paragraph at lines 19444--19447 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1558] [1559] [1560] [1561] [1562] [1563] [1564] [1565] Underfull \hbox (badness 3049) in paragraph at lines 19942--19946 []\T1/ptm/m/n/10 In the Cook's dis-tance vs leverage/(1-leverage) plot, con-tou rs of stan-dard-ized resid-u-als [1566] [1567] [1568] [1569] Underfull \hbox (badness 1194) in paragraph at lines 20205--20208 []\T1/ptm/m/n/10 coverage prob-a-bil-ity for con-fi-dence in-ter-val. Plot-ting of the con-fi-dence [1570] [1571] [1572] [1573] [1574] [1575] [1576] Underfull \hbox (badness 2503) in paragraph at lines 20584--20587 []\T1/ptm/m/n/10 indicates the al-ter-na-tive hy-poth-e-sis and must be one of \T1/zi4/m/n/10 "two.sided"\T1/ptm/m/n/10 , Underfull \hbox (badness 3919) in paragraph at lines 20611--20613 []\T1/ptm/m/n/10 the char-ac-ter string \T1/zi4/m/n/10 "Exact Poisson test" \T1 /ptm/m/n/10 or \T1/zi4/m/n/10 "Comparison of Poisson [1577] [1578] [1579] [1580] [1581] [1582] [1583] [1584] [1585] [1586] [1587] [1588] [1589] [1590] [1591] [1592] Underfull \hbox (badness 10000) in paragraph at lines 21689--21695 []\T1/ptm/m/n/10 For time-series pre-dic-tion, [][]\T1/zi4/m/n/10 predict.ar[][ ][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/n/10 predict.Arima[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/n/10 predict.arima0[][][]\T1/ptm/m/n/10 , [1593] [1594] [1595] [1596] [1597] [1598] [1599] [1600] [1601] [1602] [1603] [1604] [1605] [1606] [1607] [1608] [1609] [1610] [1611] [1612] [1613] Underfull \hbox (badness 1337) in paragraph at lines 23046--23052 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1614] [1615] [1616] [1617] [1618] [1619] [1620] [1621] Underfull \hbox (badness 10000) in paragraph at lines 23609--23610 []\T1/ptm/m/n/10 Wikipedia: [][]$\T1/zi4/m/n/10 https : / / en . wikipedia . or g / wiki / Quantile # Estimating _ quantiles _ from _ a _ [1622] [1623] [1624] [1625] [1626] Underfull \hbox (badness 10000) in paragraph at lines 23882--23885 []\T1/ptm/m/n/10 Optional vec-tor with clus-ter mem-ber-ships as re-turned by Underfull \hbox (badness 4205) in paragraph at lines 23882--23885 \T1/zi4/m/n/10 cutree(hclust.obj,k = k)\T1/ptm/m/n/10 , can be spec-i-fied for ef-fi-ciency if al-ready [1627] [1628] [1629] [1630] [1631] [1632] [1633] [1634] Underfull \hbox (badness 1824) in paragraph at lines 24468--24474 []\T1/ptm/m/n/10 Here, all the NAs in \T1/zi4/m/n/10 x \T1/ptm/m/n/10 are first re-placed by al-ter- Underfull \hbox (badness 1033) in paragraph at lines 24468--24474 \T1/ptm/m/n/10 nat-ing $\OMS/cmsy/m/n/10 ^^F\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 where $\OML/cmm/m/it/10 B$ \T1/ptm/m/n/10 is a ``Big'' num-ber (with $\OT1/cmr/ m/n/10 2\OML/cmm/m/it/10 B < M\OMS/cmsy/m/n/10 ^^C$\T1/ptm/m/n/10 , where [1635] Underfull \hbox (badness 10000) in paragraph at lines 24489--24492 []\T1/ptm/m/n/10 Apart from the end val-ues, the re-sult \T1/zi4/m/n/10 y = run med(x,k) \T1/ptm/m/n/10 sim-ply has \T1/zi4/m/n/10 y[j] = Underfull \hbox (badness 3690) in paragraph at lines 24558--24562 [][][]\T1/zi4/m/n/10 smoothEnds[][][] \T1/ptm/m/n/10 which im-ple-ments Tukey's end point rule and is called by de-fault from [1636] [1637] [1638] [1639] [1640] [1641] [1642] Underfull \vbox (badness 10000) has occurred while \output is active [1643] [1644] Underfull \hbox (badness 2165) in paragraph at lines 25067--25072 []\T1/ptm/m/n/10 Each of the fol-low-ing are \T1/zi4/m/n/10 "selfStart" \T1/ptm /m/n/10 mod-els (with ex-am-ples) [][]\T1/zi4/m/n/10 SSasymp[][][]\T1/ptm/m/n/1 0 , [][]\T1/zi4/m/n/10 SSasympOff[][][]\T1/ptm/m/n/10 , [1645] [1646] [1647] Underfull \hbox (badness 1867) in paragraph at lines 25272--25274 []\T1/ptm/m/n/10 potentially fur-ther ar-gu-ments passed to and from meth-ods. Passed to Underfull \hbox (badness 10000) in paragraph at lines 25287--25291 []\T1/ptm/m/n/10 where \T1/zi4/m/n/10 NN <-[][]nobs[][][](object,use.fallback = use.fallback) \T1/ptm/m/n/10 and \T1/zi4/m/n/10 PP [1648] [1649] [1650] [1651] [1652] [1653] [1654] [1655] [1656] [1657] [1658] [1659] [1660] [1661] [1662] [1663] [1664] [1665] [1666] [1667] [1668] [1669] Underfull \vbox (badness 10000) has occurred while \output is active [1670] Underfull \hbox (badness 3514) in paragraph at lines 26850--26855 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1671] [1672] [1673] [1674] Overfull \hbox (2.23795pt too wide) in paragraph at lines 27084--27084 [] \T1/zi4/m/n/9 quote({f(t[0.5]) == frac(phi[1],2)}~{} %=>% {}~~{t[0.5] == frac(log(2), e^{phi[2]})}),[] [1675] Underfull \hbox (badness 3514) in paragraph at lines 27120--27126 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1676] [1677] [1678] Underfull \hbox (badness 3514) in paragraph at lines 27334--27339 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1679] [1680] Underfull \hbox (badness 3514) in paragraph at lines 27421--27426 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1681] Underfull \hbox (badness 3514) in paragraph at lines 27486--27491 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1682] Underfull \hbox (badness 3514) in paragraph at lines 27580--27585 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 input\ T1/ptm/m/n/10 . It is the value of the ex-pres-sion [1683] [1684] Underfull \hbox (badness 6691) in paragraph at lines 27672--27677 []\T1/ptm/m/n/10 a nu-meric vec-tor of the same length as \T1/zi4/m/n/10 x\T1/p tm/m/n/10 . It is the value of the ex-pres-sion [1685] [1686] [1687] [1688] [1689] [1690] [1691] [1692] Underfull \hbox (badness 4024) in paragraph at lines 28202--28205 []\T1/ptm/m/n/10 the span (in lags) of the loess win-dow for trend ex-trac-tion , which [1693] [1694] [1695] [1696] [1697] [1698] [1699] [1700] [1701] Underfull \hbox (badness 5431) in paragraph at lines 28808--28810 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1702] [1703] [1704] [1705] Underfull \hbox (badness 5431) in paragraph at lines 29018--29021 []\T1/ptm/m/n/10 the cor-re-la-tion ma-trix cor-re-spond-ing to the above \T1/z i4/m/n/10 cov.unscaled\T1/ptm/m/n/10 , if [1706] [1707] [1708] [1709] [1710] Underfull \hbox (badness 1337) in paragraph at lines 29333--29337 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1711] [1712] [1713] [1714] Underfull \hbox (badness 1616) in paragraph at lines 29645--29648 []\T1/ptm/m/n/10 color, plot-ting char-ac-ter ex-pan-sion and type for par-tial resid-u-als, when [1715] [1716] [1717] [1718] [1719] [1720] [1721] [1722] [1723] [1724] [1725] [1726] [1727] [1728] [1729] [1730] [1731] [1732] Underfull \hbox (badness 3557) in paragraph at lines 30779--30783 []\T1/ptm/m/n/10 Setting \T1/zi4/m/n/10 extendInt \T1/ptm/m/n/10 to a non-\T1/z i4/m/n/10 "no" \T1/ptm/m/n/10 string, means search-ing for the cor-rect \T1/zi4 /m/n/10 interval = [1733] [1734] Underfull \vbox (badness 10000) has occurred while \output is active [1735] [1736] [1737] Underfull \hbox (badness 1337) in paragraph at lines 31143--31147 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of [1738] [1739] [1740] [1741] [1742] [1743] [1744] [1745] Underfull \hbox (badness 1337) in paragraph at lines 31672--31676 []\T1/ptm/m/n/10 a char-ac-ter string spec-i-fy-ing the al-ter-na-tive hy-poth- e-sis, must be one of Underfull \hbox (badness 10000) in paragraph at lines 31686--31688 []\T1/ptm/m/n/10 (when \T1/zi4/m/n/10 conf.int \T1/ptm/m/n/10 is true:) a pos-i -tive nu-meric tol-er-ance, used in [1746] [1747] [1748] Overfull \hbox (0.71648pt too wide) in paragraph at lines 31879--31879 []\T1/zi4/m/n/9 wilcox.test( 4:2, 3:1, paired=TRUE) # Warning: canno t compute exact p-value with ties[] [1749] [1750] Overfull \hbox (19.71954pt too wide) in paragraph at lines 32040--32040 [] \T1/zi4/m/n/10 frequency = NULL, deltat = NULL, extend = FALSE, ts.eps = getOption("ts.eps"), ...)[] [1751] [1752] [1753] [1754] [1755]) (./stats4-pkg.tex [1756] Chapter 11. [1757] [1758] [1759] Underfull \vbox (badness 10000) has occurred while \output is active [1760] [1761] [1762] [1763] [1764]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.show.Rdash.methods}) has been already used, duplicate ignored \relax l.503 ...Package \pkg{stats4}}{show.Rdash.methods} [1765] [1766] [1767]) (./tcltk-pkg.tex [1768] Chapter 12. [1769] [1770] [1771] [1772] [1773] [1774] [1775] Underfull \vbox (badness 10000) has occurred while \output is active [1776] Underfull \hbox (badness 1546) in paragraph at lines 664--671 []\T1/zi4/m/n/10 tcl \T1/ptm/m/n/10 pro-vides a generic in-ter-face to call-ing any Tk or Tcl com-mand by sim-ply run-ning [1777] [1778] [1779] [1780] [1781] [1782] [1783] [1784] [1785] [1786] [1787] [1788]) (./tools-pkg.tex Chapter 13. [1789] LaTeX Font Warning: Font shape `T1/zi4/m/it' undefined (Font) using `T1/zi4/m/n' instead on input line 72. [1790] Underfull \hbox (badness 3039) in paragraph at lines 167--170 []\T1/zi4/m/n/10 assertWarning() \T1/ptm/m/n/10 as-serts that a warn-ing will b e sig-nalled, but \T1/ptm/m/it/10 not \T1/ptm/m/n/10 an er-ror, whereas [1791] [1792] Underfull \hbox (badness 1308) in paragraph at lines 288--301 []\T1/ptm/m/n/10 At a min-i-mum, the en-vi-ron-ment should con-tain rou-tines t o ren-der each of the 12 types Underfull \hbox (badness 4967) in paragraph at lines 288--301 \T1/ptm/m/n/10 of bib-li-o-graphic en-try sup-ported by [][]\T1/zi4/m/n/10 bibe ntry[][][] \T1/ptm/m/n/10 as well as sev-eral other rou-tines de- Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatIncollection\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatInProcee dings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatManual\T1/ptm/m/n/10 , \T1/zi4/m/n/1 0 formatMastersthesis\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 288--301 \T1/zi4/m/n/10 formatMisc\T1/ptm/m/n/10 , \T1/zi4/m/n/10 formatPhdthesis\T1/ptm /m/n/10 , \T1/zi4/m/n/10 formatProceedings\T1/ptm/m/n/10 , \T1/zi4/m/n/10 forma tTechreport \T1/ptm/m/n/10 and [1793] Underfull \hbox (badness 3039) in paragraph at lines 392--394 []\T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 or char-ac-ter; name of vi-gnette en-gine to use. Over-rides any [1794] [1795] Underfull \hbox (badness 1142) in paragraph at lines 463--467 \T1/ptm/m/n/10 If given, vi-gnette source files are by de-fault looked for in s ub-di-rec-tory [1796] [1797] [1798] [1799] [1800] Overfull \vbox (7.18602pt too high) has occurred while \output is active [1801] [1802] [1803] [1804] [1805] Underfull \hbox (badness 4441) in paragraph at lines 1150--1160 \T1/ptm/m/n/10 giv-ing the repos-i-to-ries to use for lo-cat-ing re-verse de-pe n-den-cies (de- [1806] Underfull \hbox (badness 1014) in paragraph at lines 1174--1176 []\T1/ptm/m/n/10 a log-i-cal in-di-cat-ing whether to also sum-ma-rize the re-v erse de-pen-den-cies Underfull \hbox (badness 7238) in paragraph at lines 1180--1182 []\T1/ptm/m/n/10 a char-ac-ter string giv-ing the path to the di-rec-tory of a pre-vi-ous Underfull \hbox (badness 10000) in paragraph at lines 1217--1220 []\T1/ptm/m/n/10 Results and tim-ings can con-ve-niently be sum-ma-rized us-ing Overfull \hbox (15.52087pt too wide) in paragraph at lines 1217--1220 \T1/zi4/m/n/10 summarize_check_packages_in_dir_results \T1/ptm/m/n/10 and \T1/z i4/m/n/10 summarize_check_packages_in_dir_timings\T1/ptm/m/n/10 , [1807] [1808] [1809] [1810] [1811] Underfull \hbox (badness 2293) in paragraph at lines 1569--1571 []\T1/zi4/m/n/10 CRAN_memtest_notes() \T1/ptm/m/n/10 is now dep-re-cated, with its func-tion-al-ity in-te-grated into that of [1812] [1813] Underfull \hbox (badness 7981) in paragraph at lines 1707--1712 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1814] Underfull \hbox (badness 1082) in paragraph at lines 1714--1716 []\T1/ptm/m/n/10 a char-ac-ter vec-tor of \T1/phv/m/n/10 R \T1/ptm/m/n/10 li-br ary trees, or \T1/zi4/m/n/10 NULL \T1/ptm/m/n/10 for all known trees (see [1815] [1816] [1817]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.R.Rul.GSCMD}) has been already used, duplicate ignored \relax l.1911 ...sA{R\_GSCMD}{find\_gs\_cmd}{R.Rul.GSCMD} [1818] [1819] [1820] [1821] Overfull \hbox (17.27782pt too wide) in paragraph at lines 2213--2213 []\T1/zi4/m/n/9 writeLines(paste0("\\newcommand{\\logo}{\\if{html}{\\figure{Rl ogo.svg}{options: width=100}",[] [1822] [1823] [1824] Underfull \hbox (badness 7981) in paragraph at lines 2382--2388 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of de-pen-den-cies, a sub-set of [1825] [1826] [1827] [1828] [1829] [1830] [1831] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2866. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2867. LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 2867. [1832] [1833] [1834] [1835] Underfull \hbox (badness 1424) in paragraph at lines 3150--3152 []\T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or a named (by top-ics) char-ac-ter vec-t or of links, as re-turned by [1836] [1837] [1838] [1839] [1840] [1841] [1842] [1843] [1844] [1845] [1846] Underfull \hbox (badness 10000) in paragraph at lines 3851--3853 []\T1/ptm/m/n/10 additional ar-gu-ments use when prepar-ing the files to be run , [1847] [1848] Underfull \hbox (badness 10000) in paragraph at lines 3990--3993 []\T1/ptm/m/n/10 Where sup-ported (\T1/zi4/m/it/10 texi2dvi \T1/ptm/m/n/10 5.0 and later; \T1/zi4/m/it/10 texify.exe \T1/ptm/m/n/10 from MiK-TeX), op-tion [1849] Underfull \hbox (badness 1137) in paragraph at lines 4092--4094 []\T1/ptm/m/n/10 a ma-trix spec-i-fy-ing all pack-ages in-stalled on the lo-cal sys-tem, as from [1850] [1851] [1852] [1853] [1854] Underfull \hbox (badness 1796) in paragraph at lines 4400--4405 []\T1/ptm/m/n/10 Users should ex-pect sig-nif-i-cantly smaller speedups over \T 1/zi4/m/it/10 write_PACKAGES \T1/ptm/m/n/10 in the \T1/zi4/m/it/10 type == [1855] Underfull \hbox (badness 1838) in paragraph at lines 4474--4480 []\T1/ptm/m/n/10 The re-main-ing steps are done only if file `\T1/zi4/m/it/10 p o/\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 .pot\T1/ptm/m/n/10 ' al-ready ex-ists. The Underfull \hbox (badness 10000) in paragraph at lines 4474--4480 \T1/ptm/m/n/10 `\T1/zi4/m/it/10 src/*.{c,cc,cpp,m,mm}\T1/ptm/m/n/10 ' files in the pack-age are ex-am-ined to cre-ate a file [1856] [1857] [1858] [1859] Underfull \hbox (badness 2197) in paragraph at lines 4749--4759 []\T1/ptm/m/n/10 The de-fault cor-re-sponds to the fields needed by [][]\T1/zi4 /m/it/10 available.packages[][][]\T1/ptm/m/n/10 : [1860] Underfull \hbox (badness 1571) in paragraph at lines 4812--4816 []\T1/ptm/m/n/10 For a re-mote repos-i-tory there is a trade-off be-tween down- load speed and time spent by [1861] [1862] [1863]) (./utils-pkg.tex [1864] Chapter 14. Underfull \hbox (badness 2556) in paragraph at lines 47--52 []\T1/ptm/m/n/10 a nu-meric vec-tor or list with names par-tially match-ing `\T 1/zi4/m/it/10 insertions\T1/ptm/m/n/10 ', [1865] [1866] [1867] [1868] [1869] Underfull \hbox (badness 10000) in paragraph at lines 378--383 \T1/zi4/m/it/10 c("vertical","horizontal","cascade","minimize","restore") \T1/p tm/m/n/10 with [1870] [1871] [1872] [1873] [1874] Underfull \hbox (badness 10000) in paragraph at lines 719--725 []\T1/ptm/m/n/10 Functions \T1/zi4/m/it/10 aspell_package_Rd_files\T1/ptm/m/n/1 0 , \T1/zi4/m/it/10 aspell_package_vignettes\T1/ptm/m/n/10 , Underfull \hbox (badness 3343) in paragraph at lines 719--725 \T1/zi4/m/it/10 aspell_package_R_files \T1/ptm/m/n/10 and \T1/zi4/m/it/10 aspel l_package_C_files \T1/ptm/m/n/10 per-form spell check-ing on the [1875] [1876] Underfull \hbox (badness 5847) in paragraph at lines 855--861 []\T1/ptm/m/n/10 Argument \T1/zi4/m/it/10 filters \T1/ptm/m/n/10 can be used to se-lect which of the pack-ages on the repos-i-to- Underfull \hbox (badness 4229) in paragraph at lines 855--861 \T1/ptm/m/n/10 ries are re-ported. It is called with its de-fault value (\T1/zi 4/m/it/10 NULL\T1/ptm/m/n/10 ) by func-tions such as [1877] Underfull \hbox (badness 3861) in paragraph at lines 923--928 []\T1/ptm/m/n/10 Where pro-vided by the repos-i-tory, fields \T1/zi4/m/it/10 "O S_type"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "License"\T1/ptm/m/n/10 , \T1/zi4/m/it/ 10 "License_is_FOSS"\T1/ptm/m/n/10 , [1878] [1879] [1880] Underfull \hbox (badness 3323) in paragraph at lines 1094--1102 []\T1/ptm/m/n/10 (\T1/ptm/m/it/10 deprecated\T1/ptm/m/n/10 , use \T1/zi4/m/it/1 0 bibtex = T|F \T1/ptm/m/n/10 in-stead!) a num-ber, say $\OML/cmm/m/it/10 m$\T1 /ptm/m/n/10 , in-di-cat- Underfull \hbox (badness 2961) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ing that the bib-tex code should be given in ad-di-tion to the f or-mat- Underfull \hbox (badness 3919) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 ted tex \T1/ptm/m/it/10 when \T1/ptm/m/n/10 there are not more t han $\OML/cmm/m/it/10 m$ \T1/ptm/m/n/10 en-tries. The de-fault is Underfull \hbox (badness 3735) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 taken as [][]\T1/zi4/m/it/10 getOption[][][]("citation.bibtex.ma x",1) \T1/ptm/m/n/10 which is \T1/zi4/m/it/10 1 \T1/ptm/m/n/10 typ-i-cally. Underfull \hbox (badness 1817) in paragraph at lines 1094--1102 \T1/ptm/m/n/10 For ex-am-ple, to see no bib-tex at all, you can change the de-f ault by Underfull \hbox (badness 10000) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 logical in-di-cat-ing if biben-tries should be sorted, us-ing [1881] [1882] [1883] [1884] [1885] [1886] [1887] Underfull \hbox (badness 1371) in paragraph at lines 1611--1613 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1888] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 1681. [1889] [1890] [1891] [1892] [1893] [1894] [1895] [1896] Underfull \hbox (badness 2057) in paragraph at lines 2224--2226 []\T1/ptm/m/n/10 None for \T1/zi4/m/it/10 chooseCRANmirror()\T1/ptm/m/n/10 , th is func-tion is in-voked for its side ef-fect of up-dat-ing [1897] [1898] [1899] [1900] [1901]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.clipboard}) has been already used, duplicate ignored \relax l.2575 ... the Clipboard in MS Windows}{clipboard} [1902] [1903] Underfull \hbox (badness 1748) in paragraph at lines 2742--2745 []\T1/ptm/m/n/10 A [][]\T1/zi4/m/it/10 list[][][] \T1/ptm/m/n/10 or [][]\T1/zi4 /m/it/10 array[][][]\T1/ptm/m/n/10 , see the \T1/zi4/m/it/10 simplify \T1/ptm/m /n/10 ar-gu-ment above. In the lat-ter case, the iden-tity [1904] [1905] [1906] [1907] [1908] [1909] Underfull \hbox (badness 5388) in paragraph at lines 3151--3155 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .tab\T1/ptm/m/n/10 ', `\T1/zi4/ m/it/10 .txt\T1/ptm/m/n/10 ' or `\T1/zi4/m/it/10 .TXT\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[][][](...,header = Underfull \hbox (badness 2285) in paragraph at lines 3156--3159 []\T1/ptm/m/n/10 files end-ing `\T1/zi4/m/it/10 .csv\T1/ptm/m/n/10 ' or `\T1/zi 4/m/it/10 .CSV\T1/ptm/m/n/10 ' are read us-ing [][]\T1/zi4/m/it/10 read.table[] [][](...,header = TRUE,sep = [1910] [1911] [1912] [1913] [1914] [1915] [1916] [1917] [1918] [1919] [1920] Underfull \hbox (badness 1430) in paragraph at lines 3935--3943 []\T1/ptm/m/n/10 The level of de-tail pro-vided dur-ing trans-fer can be set by the \T1/zi4/m/it/10 quiet \T1/ptm/m/n/10 ar-gu-ment and the [1921] Underfull \hbox (badness 1231) in paragraph at lines 4012--4024 []\T1/ptm/m/n/10 Usernames and pass-words can be set for HTTP proxy trans-fers via en-vi-ron-ment vari-able [1922] [1923] Underfull \hbox (badness 10000) in paragraph at lines 4170--4172 []\T1/ptm/m/n/10 additional ar-gu-ments to be passed to [][]\T1/zi4/m/it/10 dow nload.file[][][] \T1/ptm/m/n/10 and [1924] [1925] [1926] [1927] [1928] [1929] [1930] [1931] [1932] [1933] [1934]pdf TeX warning (ext4): destination with the same identifier (name{Rfn.format}) has been already used, duplicate ignored \relax l.4868 ...mat Unordered and Ordered Lists}{format} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.format.1}) has been already used, dupl icate ignored \relax l.4868 ...mat Unordered and Ordered Lists}{format} [1935] [1936] [1937] [1938] [1939] [1940] [1941] [1942] Underfull \hbox (badness 1622) in paragraph at lines 5387--5391 []\T1/ptm/m/n/10 This func-tion will search for Win-dows han-dles, for pass-ing to ex-ter-nal GUIs or to the [1943] [1944] [1945] [1946] [1947] [1948] [1949] [1950] [1951] [1952] LaTeX Font Warning: Font shape `T1/zi4/m/sl' undefined (Font) using `T1/zi4/m/it' instead on input line 6105. Underfull \hbox (badness 1371) in paragraph at lines 6109--6111 []\T1/ptm/m/n/10 additional named ar-gu-ments such as \T1/zi4/m/it/10 method \T 1/ptm/m/n/10 and \T1/zi4/m/it/10 ccaddress \T1/ptm/m/n/10 to pass to [1953] [1954] Underfull \hbox (badness 1502) in paragraph at lines 6198--6203 []\T1/ptm/m/n/10 a char-ac-ter string to be matched in the help page `key-words '. `Key- Underfull \hbox (badness 2103) in paragraph at lines 6198--6203 \T1/ptm/m/n/10 words' are re-ally cat-e-gories: the stan-dard cat-e-gories are listed in file [1955] [1956] Underfull \hbox (badness 10000) in paragraph at lines 6371--6380 []\T1/ptm/m/n/10 One of the links on the in-dex page is the HTML pack-age in-de x, [1957] Underfull \hbox (badness 2150) in paragraph at lines 6435--6438 []\T1/ptm/m/n/10 a char-ac-ter vec-tor list-ing the types of doc-u-men-ta-tion to search. See [1958] [1959] Underfull \hbox (badness 3118) in paragraph at lines 6573--6575 []\T1/ptm/m/n/10 For de-tails of the lock-ing which is done, see the sec-tion ` Lock-ing' in the help for [1960] [1961] Underfull \hbox (badness 1325) in paragraph at lines 6751--6755 []\T1/ptm/m/n/10 a ma-trix as re-turned by [][]\T1/zi4/m/it/10 available.packag es[][][] \T1/ptm/m/n/10 list-ing pack-ages avail-able Underfull \hbox (badness 4726) in paragraph at lines 6763--6769 \T1/ptm/m/n/10 used if \T1/zi4/m/it/10 repos = NULL\T1/ptm/m/n/10 . Can also be a char-ac-ter vec-tor, a sub-set of [1962] Underfull \hbox (badness 10000) in paragraph at lines 6835--6838 []\T1/ptm/m/n/10 an op-tional char-ac-ter vec-tor of ad-di-tional op-tion(s) to be Underfull \hbox (badness 10000) in paragraph at lines 6835--6838 \T1/ptm/m/n/10 passed to \T1/zi4/m/it/10 R CMD INSTALL \T1/ptm/m/n/10 for a sou rce pack-age in-stall. E.g., Underfull \hbox (badness 1424) in paragraph at lines 6843--6846 []\T1/ptm/m/n/10 logical: if true, re-duce the amount of out-put. This is \T1/p tm/m/it/10 not \T1/ptm/m/n/10 passed to [1963] Underfull \hbox (badness 3219) in paragraph at lines 6914--6921 []\T1/ptm/m/n/10 An al-ter-na-tive (and the cur-rent de-fault) is \T1/zi4/m/it/ 10 "both" \T1/ptm/m/n/10 which means `use bi-nary if avail- Underfull \hbox (badness 5175) in paragraph at lines 6914--6921 \T1/ptm/m/n/10 able and cur-rent, oth-er-wise try source'. The ac-tion if there are source pack-ages Underfull \hbox (badness 1342) in paragraph at lines 6914--6921 \T1/ptm/m/n/10 which are pre-ferred but may con-tain code which needs to be com -piled is con-trolled by Underfull \hbox (badness 1596) in paragraph at lines 6914--6921 [][]\T1/zi4/m/it/10 getOption[][][]("install.packages.compile.from.source")\T1/ ptm/m/n/10 . \T1/zi4/m/it/10 type = "both" \T1/ptm/m/n/10 will be silently Underfull \hbox (badness 2932) in paragraph at lines 6922--6925 []\T1/ptm/m/n/10 Using pack-ages with \T1/zi4/m/it/10 type = "source" \T1/ptm/m /n/10 al-ways works pro-vided the pack-age con-tains no [1964] [1965] Underfull \hbox (badness 1546) in paragraph at lines 7048--7051 []\T1/ptm/m/n/10 For other repos-i-to-ries, us-ing \T1/zi4/m/it/10 available.pa ckages(filters = "OS_type")[\T1/ptm/m/sl/10 pkgname\T1/zi4/m/it/10 ,] \T1/ptm/m /n/10 will Underfull \hbox (badness 10000) in paragraph at lines 7081--7086 [][][]\T1/zi4/m/it/10 update.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.packages [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n/ 10 , [1966] [1967] [1968] [1969] [1970] [1971] [1972] [1973] [1974] [1975] [1976] [1977] Underfull \hbox (badness 10000) in paragraph at lines 7868--7870 []\T1/ptm/m/n/10 typically the re-sult of \T1/zi4/m/it/10 methods(..)\T1/ptm/m/ n/10 , an \T1/phv/m/n/10 R \T1/ptm/m/n/10 ob-ject of S3 class [1978] [1979] [1980] [1981] [1982] [1983] [1984] [1985] Underfull \vbox (badness 10000) has occurred while \output is active [1986] [1987] [1988] [1989] Underfull \hbox (badness 10000) in paragraph at lines 8606--8608 []\T1/ptm/m/n/10 for \T1/zi4/m/it/10 asDateBuilt()\T1/ptm/m/n/10 , a [][]\T1/zi 4/m/it/10 character[][][] \T1/ptm/m/n/10 string as from Underfull \hbox (badness 2310) in paragraph at lines 8628--8633 []\T1/ptm/m/n/10 If a `\T1/zi4/m/it/10 DESCRIPTION\T1/ptm/m/n/10 ' file for the given pack-age is found and can suc-cess-fully be read, [1990] [1991] [1992] [1993] [1994] [1995] [1996] Underfull \hbox (badness 1248) in paragraph at lines 9154--9158 []\T1/zi4/m/it/10 R CMD build \T1/ptm/m/n/10 builds \T1/phv/m/n/10 R \T1/ptm/m/ n/10 source tar-balls. The name(s) of the pack-ages are taken from the [1997] Underfull \hbox (badness 1789) in paragraph at lines 9232--9234 []\T1/ptm/m/n/10 See `Writ-ing R Ex-ten-sions' and the `R for Win-dows FAQ' for more dis-cus-sion of the [1998] [1999] [2000] [2001] [2002] [2003] [2004] [2005] [2006] Underfull \vbox (badness 5533) has occurred while \output is active [2007] [2008] [2009] Underfull \hbox (badness 1097) in paragraph at lines 10069--10072 []\T1/ptm/m/n/10 The name \T1/zi4/m/it/10 "clipboard" \T1/ptm/m/n/10 may also b e used on Win-dows, in which case [2010] [2011] Underfull \hbox (badness 3000) in paragraph at lines 10205--10210 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 read.t able[][][]\T1/ptm/m/n/10 ; [2012] [2013] [2014] [2015] [2016] [2017] [2018] [2019] Underfull \hbox (badness 2134) in paragraph at lines 10787--10792 [][][]\T1/zi4/m/it/10 scan[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 type.conve rt[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 read.fwf[][][] \T1/ptm/m/n/10 for read-ing \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ixed \T1/ptm/m/it/10 w\T1/ptm/m/n/10 i dth \T1/ptm/m/it/10 f\T1/ptm/m/n/10 ormatted in-put; [][]\T1/zi4/m/it/10 write. table[][][]\T1/ptm/m/n/10 ; [2020] Underfull \hbox (badness 10000) in paragraph at lines 10843--10848 []\T1/ptm/m/n/10 The `hive' con-tain-ing the key. The ab-bre-vi-a-tions are for Underfull \hbox (badness 10000) in paragraph at lines 10843--10848 \T1/zi4/m/it/10 HKEY_LOCAL_MACHINE\T1/ptm/m/n/10 , \T1/zi4/m/it/10 HKEY_CLASSES _ROOT\T1/ptm/m/n/10 . \T1/zi4/m/it/10 HKEY_CURRENT_USER\T1/ptm/m/n/10 , [2021] [2022] [2023] [2024] [2025] [2026] [2027] Underfull \hbox (badness 2469) in paragraph at lines 11337--11341 []\T1/ptm/m/n/10 Wikipedia con-trib-u-tors (2006). Ro-man nu-mer-als. Wikipedia , The Free En-cy-clo-pe-dia. Underfull \hbox (badness 3428) in paragraph at lines 11337--11341 [][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / w / index . php ? title = Roman _ numerals & oldid = 78252134$[][]\T1/ptm/m/n/10 . Ac- [2028] [2029] [2030] [2031] [2032] [2033] Underfull \hbox (badness 4060) in paragraph at lines 11753--11756 []\T1/ptm/m/n/10 If `\T1/zi4/m/it/10 --default-packages\T1/ptm/m/n/10 ' is not used, then \T1/zi4/m/it/10 Rscript \T1/ptm/m/n/10 checks the en-vi-ron-ment var i-able [2034] Overfull \hbox (18.77168pt too wide) in paragraph at lines 11776--11776 []\T1/zi4/m/n/9 Rscript --default-packages=methods,datasets,utils,grDevices,gr aphics,stats -e \TS1/zi4/m/n/9 '\T1/zi4/m/n/9 sessionInfo()\TS1/zi4/m/n/9 '[] [2035] [2036] [2037] Underfull \hbox (badness 2150) in paragraph at lines 12015--12017 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Ctags$[][]\T1/ ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / www . gnu . org / software / emac s / manual / [2038] [2039] [2040] [2041] Underfull \hbox (badness 10000) in paragraph at lines 12234--12238 []\T1/ptm/m/n/10 The de-fault for \T1/zi4/m/it/10 stylepath \T1/ptm/m/n/10 is n ow taken from the en-vi-ron-ment vari-able Underfull \hbox (badness 10000) in paragraph at lines 12265--12271 []\T1/ptm/m/n/10 If you wish to over-ride this de-fault be-hav-ior en-tirely, y ou can add a [2042] [2043] Underfull \hbox (badness 1009) in paragraph at lines 12459--12471 []\T1/ptm/m/n/10 Before each code chunk is eval-u-ated, zero or more hook func- tions can be ex-e-cuted. If [2044] Underfull \hbox (badness 4779) in paragraph at lines 12499--12501 []\T1/ptm/m/n/10 The file `\T1/zi4/m/it/10 Rconsole\T1/ptm/m/n/10 ' con-fig-ure s the R GUI (\T1/zi4/m/it/10 Rgui\T1/ptm/m/n/10 ) con-sole un-der MS Win-dows a nd Underfull \hbox (badness 1077) in paragraph at lines 12529--12536 \T1/ptm/m/n/10 (strip-ping any trail-ing slash), oth-er-wise to the Win-dows `p er-sonal' di-rec-tory, oth-er-wise to [2045] [2046] [2047] [2048] [2049] [2050] Underfull \hbox (badness 3780) in paragraph at lines 12937--12941 []\T1/ptm/m/n/10 A Bio-con-duc-tor mir-ror can be se-lected by set-ting [][]\T1 /zi4/m/it/10 options[][][]("BioC_mirror")\T1/ptm/m/n/10 , e.g. via Underfull \hbox (badness 2635) in paragraph at lines 12953--12956 []\T1/ptm/m/n/10 Repository `\T1/zi4/m/it/10 CRAN\T1/ptm/m/n/10 ' is treated sp e-cially: the value is taken from the cur-rent set-ting of [2051] [2052] [2053] Underfull \hbox (badness 2302) in paragraph at lines 13158--13160 []\T1/ptm/m/n/10 Convert file paths to the short form. This is an in-ter-face t o the Win-dows API call [2054] [2055] [2056] [2057] [2058] Underfull \hbox (badness 10000) in paragraph at lines 13456--13461 []\T1/ptm/m/n/10 logical; if \T1/zi4/m/it/10 TRUE \T1/ptm/m/n/10 (de-fault), [] []\T1/zi4/m/it/10 deparse[][][](control = ) \T1/ptm/m/n/10 will not have Underfull \hbox (badness 5970) in paragraph at lines 13465--13468 []\T1/ptm/m/n/10 the page width to be used. The de-fault is the cur-rently ac-t ive [2059] Underfull \vbox (badness 10000) has occurred while \output is active [2060] [2061] [2062] [2063] [2064] Underfull \hbox (badness 2932) in paragraph at lines 13889--13896 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 syntax = NULL \T1/ptm/m/n/10 (the de-fault) then the avail-able syn-tax ob-jects are con-sulted in turn, Underfull \hbox (badness 1688) in paragraph at lines 13889--13896 \T1/ptm/m/n/10 and se-lected if their \T1/zi4/m/it/10 extension \T1/ptm/m/n/10 com-po-nent matches (as a reg-exp) the file name. Ob- [2065] [2066] [2067] [2068] Underfull \hbox (badness 6510) in paragraph at lines 14198--14202 []\T1/ptm/m/n/10 When ar-gu-ment \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 is set to t he com-mand \T1/zi4/m/it/10 tar \T1/ptm/m/n/10 on ma-cOS, en-vi-ron-ment vari-a ble Underfull \hbox (badness 10000) in paragraph at lines 14205--14208 [][][]$\T1/zi4/m/it/10 https : / / en . wikipedia . org / wiki / Tar _ (file _ format)$[][]\T1/ptm/m/n/10 , [][]$\T1/zi4/m/it/10 https : / / pubs . opengroup . org / Underfull \hbox (badness 2245) in paragraph at lines 14205--14208 \T1/zi4/m/it/10 onlinepubs / 9699919799 / utilities / pax . html # tag _ 20 _ 9 2 _ 13 _ 06$[][] \T1/ptm/m/n/10 for the way the POSIX [2069] [2070] [2071] [2072] [2073] [2074] [2075] [2076] [2077] Underfull \hbox (badness 10000) in paragraph at lines 14871--14876 []\T1/ptm/m/n/10 Arguments such as \T1/zi4/m/it/10 destdir \T1/ptm/m/n/10 and \ T1/zi4/m/it/10 dependencies \T1/ptm/m/n/10 to be passed to Underfull \hbox (badness 3861) in paragraph at lines 14871--14876 [][]\T1/zi4/m/it/10 install.packages[][][] \T1/ptm/m/n/10 and \T1/zi4/m/it/10 i gnore_repo_cache\T1/ptm/m/n/10 , \T1/zi4/m/it/10 max_repo_cache_age \T1/ptm/m/n /10 and [2078] Underfull \hbox (badness 1052) in paragraph at lines 14877--14879 []\T1/ptm/m/n/10 character, in-di-cat-ing the type of pack-age to down-load and in-stall. See Underfull \hbox (badness 10000) in paragraph at lines 14936--14939 [][][]\T1/zi4/m/it/10 install.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 available.packages[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 download.package s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 installed.packages[][][]\T1/ptm/m/n /10 , [2079] [2080] [2081] [2082] [2083] [2084] [2085] [2086] [2087] [2088] [2089] [2090] Underfull \hbox (badness 10000) in paragraph at lines 15709--15711 []\T1/ptm/m/n/10 To write a Unix-style file on Win-dows, use a bi-nary con-nec- tion e.g. \T1/zi4/m/it/10 file = [2091] [2092] [2093]) [2094] [2095] [2096] (./KernSmooth-pkg.tex Chapter 15. [2097] [2098] [2099] [2100] [2101] [2102] [2103] [2104] [2105] [2106]) (./MASS-pkg.tex Chapter 16. [2107] [2108] [2109] [2110] [2111] [2112] [2113] [2114] [2115] [2116] [2117] [2118] [2119] [2120] [2121] [2122] [2123] [2124] [2125] [2126] [2127] [2128] [2129] [2130] [2131] [2132] [2133] [2134] [2135] [2136] [2137] [2138] [2139] [2140] [2141] [2142] [2143] Underfull \hbox (badness 7944) in paragraph at lines 2703--2706 []\T1/ptm/m/n/10 further ar-gu-ments for \T1/zi4/m/it/10 plot \T1/ptm/m/n/10 an d graph-i-cal pa-ram-e-ters. Note that [2144] [2145] [2146] Underfull \hbox (badness 10000) in paragraph at lines 2873--2878 \T1/zi4/m/it/10 "geometric"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "log-normal"\T1/ptm /m/n/10 , \T1/zi4/m/it/10 "lognormal"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "logistic "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "negative [2147] [2148] Underfull \hbox (badness 4686) in paragraph at lines 3041--3043 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2149] [2150] [2151] [2152] [2153] [2154] [2155] [2156] [2157] [2158] [2159] [2160] [2161] [2162] [2163] [2164] [2165] [2166] [2167] [2168] [2169] [2170] [2171] [2172] [2173] Underfull \hbox (badness 1117) in paragraph at lines 4802--4805 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2174] Underfull \hbox (badness 1117) in paragraph at lines 4880--4883 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2175] [2176] [2177] [2178] [2179] [2180] [2181] [2182] [2183] [2184] [2185] [2186] [2187] [2188] [2189] [2190] [2191]pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.npk}) has been already used, duplicate ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.npk.1}) has been already used, duplica te ignored \relax l.6146 ...sical N, P, K Factorial Experiment}{npk} [2192] [2193] [2194] [2195] [2196] [2197] [2198] [2199] [2200] [2201] [2202] [2203] [2204] Underfull \hbox (badness 1117) in paragraph at lines 7117--7124 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [2205] Underfull \hbox (badness 3138) in paragraph at lines 7188--7194 []\T1/ptm/m/n/10 The log-log and com-ple-men-tary log-log links are the in-crea s-ing func-tions $\OML/cmm/m/it/10 F[]\OT1/cmr/m/n/10 (\OML/cmm/m/it/10 p\OT1/c mr/m/n/10 ) = [2206] [2207] [2208] Underfull \hbox (badness 6775) in paragraph at lines 7367--7370 \T1/ptm/m/n/10 only the first \T1/zi4/m/it/10 dimen \T1/ptm/m/n/10 dis-crim-i-n ant com-po-nents are used (ex-cept for [2209] [2210] [2211] [2212] [2213] [2214] [2215] [2216] [2217] Underfull \hbox (badness 4686) in paragraph at lines 8000--8002 []\T1/ptm/m/n/10 An early ter-mi-na-tion cri-te-rion. If any par-tial de-nom-i- na-tor ex-ceeds [2218] [2219] [2220] [2221] [2222] [2223] [2224] [2225] [2226] [2227] [2228] [2229] [2230] [2231] [2232] [2233] [2234] [2235] [2236] [2237] [2238] [2239] [2240] [2241] [2242] [2243] [2244] [2245] [2246] [2247] [2248] [2249] [2250] [2251] [2252] [2253] [2254]) (./Matrix-pkg.tex Chapter 17. Underfull \hbox (badness 10000) in paragraph at lines 41--44 []\T1/ptm/m/n/10 Note that the cur-rent im-ple-men-ta-tion de-tails are sub-jec t to change, and if you Underfull \hbox (badness 10000) in paragraph at lines 41--44 \T1/ptm/m/n/10 con-sider work-ing with these classes, please con-tact the pack- age main-tain-ers [2255] Underfull \hbox (badness 1769) in paragraph at lines 95--98 []\T1/ptm/m/n/10 This is cur-rently ex-per-i-men-tal and not yet used for our o wn code. Please con-tact us [2256] [2257] [2258] [2259] Underfull \hbox (badness 5119) in paragraph at lines 509--513 []\T1/ptm/m/n/10 logical; if true the re-sult will be sym-met-ric (in-her-it-in g from class [2260] [2261] Underfull \hbox (badness 2418) in paragraph at lines 605--608 []\T1/ptm/m/n/10 The value of \T1/zi4/m/it/10 bdiag() \T1/ptm/m/n/10 in-heris f rom class [][]\T1/zi4/m/it/10 CsparseMatrix[][][]\T1/ptm/m/n/10 , whereas \T1/z i4/m/it/10 .bdiag() \T1/ptm/m/n/10 re-turns a [2262] [2263] Underfull \hbox (badness 1701) in paragraph at lines 758--762 []\T1/ptm/m/n/10 The orig-i-nal LA-PACK source code, in-clud-ing doc-u-men-ta-t ion; [][]$\T1/zi4/m/it/10 https : / / www . netlib . org / [2264] [2265] [2266] [2267] Underfull \hbox (badness 10000) in paragraph at lines 1048--1050 []\T1/zi4/m/it/10 signature(from = "CHMfactor",to = "sparseMatrix") \T1/ptm/m/n /10 (or equiv-a-lently, \T1/zi4/m/it/10 to = [2268] [2269]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.chol}) has been already used, duplicate ignored \relax l.1160 ...- 'Matrix' S4 Generic and Methods}{chol} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.chol.1}) has been already used, duplic ate ignored \relax l.1160 ...- 'Matrix' S4 Generic and Methods}{chol} Underfull \hbox (badness 1117) in paragraph at lines 1218--1224 \T1/ptm/m/n/10 sider [][]\T1/zi4/m/it/10 Cholesky[][][]() \T1/ptm/m/n/10 in suc h sit-u-a-tions, since \T1/zi4/m/it/10 chol(x,pivot=TRUE) \T1/ptm/m/n/10 uses t he same al-go-rithm [2270pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol ,dsCMatrix.Rdash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.1249 \item[chol] \code{signature(x = "dsCMatrix", pivot = "logical")}:pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,lsCMatrix.R dash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.1249 \item[chol] \code{signature(x = "dsCMatrix", pivot = "logical")}:pdfTeX warning (ext4): destination with the same identifier (name{Rfn.chol,nsCMatrix.R dash.method}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.1249 \item[chol] \code{signature(x = "dsCMatrix", pivot = "logical")}:] [2271] [2272] Underfull \hbox (badness 2277) in paragraph at lines 1418--1421 []\T1/ptm/m/n/10 This is a generic func-tion with spe-cial meth-ods for dif-fer -ent types of ma-tri-ces. Use [2273] [2274] Underfull \hbox (badness 1097) in paragraph at lines 1590--1593 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "MatrixFactorization" \T1/ptm/m/n/10 and \T1/zi4/m/it/10 "dtrMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi4/m/it/10 " dgeMatrix"\T1/ptm/m/n/10 , by class Underfull \hbox (badness 1783) in paragraph at lines 1596--1600 []\T1/ptm/m/n/10 Both these fac-tor-iza-tions can \T1/ptm/m/it/10 di-rectly \T1 /ptm/m/n/10 be treated as (tri-an-gu-lar) ma-tri-ces, as they ex-tend [2275]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.col Sums}) has been already used, duplicate ignored \relax l.1653 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colSums.1}) has been already used, dup licate ignored \relax l.1653 ... Row and Column Sums and Means}{colSums} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.colMeans}) has been already used, dupl icate ignored \relax l.1654 \aliasA{colMeans}{colSums}{colMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowMeans}) has been already used, duplicate i gnored \relax l.1675 \aliasA{rowMeans}{colSums}{rowMeans} pdfTeX warning (ext4): destination w ith the same identifier (name{Rfn.rowSums}) has been already used, duplicate ig nored \relax l.1686 \aliasA{rowSums}{colSums}{rowSums} [2276] [2277] [2278] Underfull \hbox (badness 3547) in paragraph at lines 1905--1908 []\T1/ptm/m/n/10 a num-ber $\OML/cmm/m/it/10 > \OT1/cmr/m/n/10 0$\T1/ptm/m/n/10 , the es-ti-mated (1-norm) con-di-tion num-ber $[]$; when [2279] [2280] [2281] [2282] [2283] Underfull \hbox (badness 1360) in paragraph at lines 2328--2332 []\T1/ptm/m/n/10 Objects can be cre-ated by calls of the form \T1/zi4/m/it/10 n ew("dgCMatrix",...)\T1/ptm/m/n/10 , more typ-i-cally via [2284] [2285] [2286] [2287] Underfull \hbox (badness 2717) in paragraph at lines 2644--2648 []\T1/ptm/m/n/10 However this means that a ma-trix typ-i-cally can be stored in more than one pos-si-ble [2288] [2289] Underfull \hbox (badness 6842) in paragraph at lines 2734--2737 []\T1/zi4/m/it/10 Diagonal() \T1/ptm/m/n/10 re-turns an ob-ject of class [][]\T 1/zi4/m/it/10 ddiMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 ldiMatrix[] [][] \T1/ptm/m/n/10 (with ``su-per-class'' [2290] Underfull \hbox (badness 10000) in paragraph at lines 3021--3025 []\T1/zi4/m/it/10 signature(x = "diagonalMatrix")\T1/ptm/m/n/10 : all these gro up meth-ods re-turn a [2291] [2292] [2293] Underfull \hbox (badness 1173) in paragraph at lines 3231--3233 []\T1/zi4/m/it/10 signature(x = "dMatrix",digits = "numeric")\T1/ptm/m/n/10 : t his group con-tains [][]\T1/zi4/m/it/10 round[][][]() \T1/ptm/m/n/10 and Underfull \hbox (badness 10000) in paragraph at lines 3278--3280 [][][]\T1/zi4/m/it/10 drop0[][][](x,tol=1e-10) \T1/ptm/m/n/10 is some-times pre fer-able to (and more ef-fi-cient than) [2294] [2295] Underfull \hbox (badness 1354) in paragraph at lines 3477--3480 []\T1/ptm/m/n/10 a Ma-trix like \T1/zi4/m/it/10 x \T1/ptm/m/n/10 but with no ex -plicit ze-ros, i.e., \T1/zi4/m/it/10 !any(x@x == 0)\T1/ptm/m/n/10 , al-ways in -her-it-ing from [2296] [2297] [2298] [2299] [2300] Underfull \hbox (badness 6188) in paragraph at lines 3887--3890 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = Underfull \hbox (badness 5147) in paragraph at lines 3890--3893 []\T1/zi4/m/it/10 signature(x = "dspMatrix",type = "character")\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 x = "dsyMatrix" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 type = [2301] [2302] Underfull \hbox (badness 2318) in paragraph at lines 4004--4008 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "dgCMatrix"\T1/ptm/m/n/10 , di-rectly. C lass \T1/zi4/m/it/10 "triangularMatrix"\T1/ptm/m/n/10 , di-rectly. Class \T1/zi 4/m/it/10 "dMatrix"\T1/ptm/m/n/10 , [2303] [2304] Underfull \hbox (badness 5245) in paragraph at lines 4140--4144 []\T1/zi4/m/it/10 signature(x = "dtpMatrix",logarithm = "logical")\T1/ptm/m/n/1 0 : the [][]\T1/zi4/m/it/10 determinant[][][](x) [2305] [2306] [2307] [2308] [2309] [2310] Overfull \hbox (8.27782pt too wide) in paragraph at lines 4562--4562 [] \T1/zi4/m/n/9 readHB(gzcon(url("https://www.cise.ufl.edu/research/sparse/RB /Boeing/msc00726.tar.gz"))))[] Overfull \hbox (48.77782pt too wide) in paragraph at lines 4565--4565 [] \T1/zi4/m/n/9 readMM(gzcon(url("ftp://math.nist.gov/pub/MatrixMarket2/Harwe ll-Boeing/counterx/jgl009.mtx.gz"))))[] [2311] [2312] Underfull \hbox (badness 1931) in paragraph at lines 4797--4799 []\T1/ptm/m/n/10 a string spec-i-fy-ing how the \T1/zi4/m/it/10 zero.print \T1/ ptm/m/n/10 codes should be aligned, see [2313] [2314] [2315] [2316] [2317] Underfull \hbox (badness 1005) in paragraph at lines 5103--5108 []\T1/ptm/m/n/10 color for the bor-der of each rect-an-gle. \T1/zi4/m/it/10 NA \T1/ptm/m/n/10 means no bor-der is drawn. Underfull \hbox (badness 1655) in paragraph at lines 5103--5108 \T1/ptm/m/n/10 When \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 as by de-fault, \T1/zi4 /m/it/10 border.col <-if(lwd < .01) NA else NULL \T1/ptm/m/n/10 is Underfull \hbox (badness 5862) in paragraph at lines 5122--5125 []\T1/ptm/m/n/10 All meth-ods cur-rently end up call-ing the method for the [][ ]\T1/zi4/m/it/10 dgTMatrix[][][] \T1/ptm/m/n/10 class. Use [2318] Overfull \hbox (42.75635pt too wide) in paragraph at lines 5170--5170 []\T1/zi4/m/n/9 image(USCounties, c(1,100), c(1,100), useAbs=FALSE, lwd=3, bor der.col = adjustcolor("skyblue", 1/2))[] [2319] Underfull \hbox (badness 3229) in paragraph at lines 5271--5280 []\T1/ptm/m/n/10 While ``row-indexing'' (of more than one row \T1/ptm/m/it/10 o r \T1/ptm/m/n/10 us-ing \T1/zi4/m/it/10 drop=FALSE\T1/ptm/m/n/10 ) stays within the [2320] Underfull \hbox (badness 10000) in paragraph at lines 5313--5315 []\T1/zi4/m/it/10 signature(x = "matrix",y = "indMatrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 4995) in paragraph at lines 5318--5321 []\T1/zi4/m/it/10 signature(from = "numeric",to = "indMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low Underfull \hbox (badness 10000) in paragraph at lines 5328--5331 []\T1/zi4/m/it/10 signature(from = "indMatrix",to = "matrix")\T1/ptm/m/n/10 : c o-er-cion to a tra-di-tional [2321] [2322] [2323] [2324] [2325] Underfull \hbox (badness 1014) in paragraph at lines 5707--5710 []\T1/zi4/m/it/10 isTriangular(M) \T1/ptm/m/n/10 re-turns a [][]\T1/zi4/m/it/10 logical[][][] \T1/ptm/m/n/10 in-di-cat-ing if \T1/zi4/m/it/10 M \T1/ptm/m/n/10 is a tri-an-gu-lar ma-trix. Anal-o-gously, [2326] [2327] [2328] [2329] Underfull \hbox (badness 10000) in paragraph at lines 6022--6025 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2330] Underfull \hbox (badness 2478) in paragraph at lines 6134--6139 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ldenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "lde nseMatrix"\T1/ptm/m/n/10 . Class [2331] Underfull \hbox (badness 10000) in paragraph at lines 6142--6145 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2332] Underfull \hbox (badness 10000) in paragraph at lines 6334--6337 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2333] Underfull \hbox (badness 10000) in paragraph at lines 6432--6435 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2334] Underfull \hbox (badness 10000) in paragraph at lines 6507--6510 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2335] Underfull \hbox (badness 2050) in paragraph at lines 6583--6586 []\T1/zi4/m/it/10 lu() \T1/ptm/m/n/10 is a generic func-tion with spe-cial meth -ods for dif-fer-ent types of ma-tri-ces. Use [2336] [2337] [2338] [2339] [2340] Underfull \hbox (badness 6268) in paragraph at lines 6896--6900 []\T1/ptm/m/n/10 Most of the time, the func-tion works via a tra-di-tional (\T1 /ptm/m/it/10 full\T1/ptm/m/n/10 ) [][]\T1/zi4/m/it/10 matrix[][][]\T1/ptm/m/n/1 0 . How-ever, [2341]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.det }) has been already used, duplicate ignored \relax l.6995 \aliasA{det}{Matrix-class}{det} Underfull \hbox (badness 1527) in paragraph at lines 7088--7090 []\T1/zi4/m/it/10 signature(x = "Matrix")\T1/ptm/m/n/10 : sim-ply de-fined as \ T1/zi4/m/it/10 prod(dim(x)) \T1/ptm/m/n/10 (and hence of mode [2342] Underfull \hbox (badness 4846) in paragraph at lines 7093--7096 []\T1/zi4/m/it/10 signature(object = "Matrix")\T1/ptm/m/n/10 : draws an [][]\T1 /zi4/m/it/10 image[][][] \T1/ptm/m/n/10 of the ma-trix en-tries, us-ing Underfull \hbox (badness 10000) in paragraph at lines 7098--7101 [2343]pdfTeX warning (ext4): destination with the same identifier (name{Rfn..Rp cent.*.Rpcent.}) has been already used, duplicate ignored \relax l.7171 ...*\%}{matrix-products}{.Rpcent.*.Rpcent.} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.crossprod}) has been already used, dup licate ignored \relax l.7279 ...A{crossprod}{matrix-products}{crossprod} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.tcrossprod}) has been already used, du plicate ignored \relax l.7379 ...tcrossprod}{matrix-products}{tcrossprod} [2344pdfTeX warning (ext4): destination with the same identifier (name{Rfn.crossprod.Rdash.methods}) has be en already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.7536 \code{boolArith = TRUE} for regular (``non cross'') matrixpdfTeX warning (ext4): destination with the same identifier (name{Rfn.tcrossprod.Rdash.method s}) has been already used, duplicate ignored ...shipout:D \box_use:N \l_shipout_box l.7536 \code{boolArith = TRUE} for regular (``non cross'') matrix] Underfull \hbox (badness 10000) in paragraph at lines 7553--7558 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures (use Underfull \hbox (badness 1448) in paragraph at lines 7553--7558 \T1/zi4/m/it/10 showMethods("%*%",class="dtrMatrix")\T1/ptm/m/n/10 ): ma-trix m ul-ti-pli-ca-tion. Mul-ti-pli-ca-tion of Underfull \hbox (badness 10000) in paragraph at lines 7562--7564 []\T1/zi4/m/it/10 signature(x = "CsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 10000) in paragraph at lines 7564--7566 []\T1/zi4/m/it/10 signature(x = "TsparseMatrix",y = "missing") \T1/ptm/m/n/10 r e-turns \T1/zi4/m/it/10 t(x) %*% x \T1/ptm/m/n/10 as an Underfull \hbox (badness 1264) in paragraph at lines 7568--7569 []\T1/zi4/m/it/10 signature(x = "dtrMatrix",y = "matrix") \T1/ptm/m/n/10 and ot her sig-na-tures, see [2345] [2346] Underfull \hbox (badness 1430) in paragraph at lines 7712--7717 []\T1/ptm/m/n/10 classes in-her-it-ing from \T1/zi4/m/it/10 "MatrixFactorizatio n"\T1/ptm/m/n/10 , such as [][]\T1/zi4/m/it/10 LU[][][]\T1/ptm/m/n/10 , [][]\T1 /zi4/m/it/10 Cholesky[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 CHMfactor[][][] \T1/ptm/m/n/10 , and [2347] Underfull \hbox (badness 10000) in paragraph at lines 7783--7786 []\T1/zi4/m/it/10 signature(x = "ndenseMatrix")\T1/ptm/m/n/10 , se-man-ti-cally equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2348] Underfull \hbox (badness 10000) in paragraph at lines 7839--7841 []\T1/ptm/m/n/10 logical in-di-cat-ing if \T1/zi4/m/it/10 X <-(X + t(X))/2 \T1/ ptm/m/n/10 should be done, af-ter \T1/zi4/m/it/10 X [2349] [2350] Underfull \vbox (badness 10000) has occurred while \output is active [2351] Underfull \hbox (badness 2478) in paragraph at lines 8046--8051 []\T1/ptm/m/n/10 Class \T1/zi4/m/it/10 "ndenseMatrix"\T1/ptm/m/n/10 , di-rectly . Class \T1/zi4/m/it/10 "lMatrix"\T1/ptm/m/n/10 , by class \T1/zi4/m/it/10 "nde nseMatrix"\T1/ptm/m/n/10 . Class Underfull \hbox (badness 10000) in paragraph at lines 8054--8057 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ); use, e.g., [2352] [2353] Underfull \hbox (badness 5924) in paragraph at lines 8248--8250 []\T1/ptm/m/n/10 fast sim-ple meth-ods [2354]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.nor m}) has been already used, duplicate ignored \relax l.8288 \HeaderA{norm}{Matrix Norms}{norm} pdfTeX warning (ext4): destination wit h the same identifier (name{Rfn.norm.1}) has been already used, duplicate ignor ed \relax l.8288 \HeaderA{norm}{Matrix Norms}{norm} [2355] [2356] Underfull \hbox (badness 10000) in paragraph at lines 8561--8564 []\T1/zi4/m/it/10 signature(x = "lsparseMatrix")\T1/ptm/m/n/10 , se-man-ti-call y equiv-a-lent to \T1/ptm/b/n/10 base \T1/ptm/m/n/10 func-tion [2357] Underfull \hbox (badness 10000) in paragraph at lines 8651--8654 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2358] Underfull \hbox (badness 10000) in paragraph at lines 8727--8730 []\T1/ptm/m/n/10 Currently, mainly [][]\T1/zi4/m/it/10 t[][][]() \T1/ptm/m/n/10 and co-er-cion meth-ods (for [][]\T1/zi4/m/it/10 as[][][](.)\T1/ptm/m/n/10 ; u se, e.g., [2359] Underfull \vbox (badness 10000) has occurred while \output is active [2360] Underfull \hbox (badness 10000) in paragraph at lines 8853--8855 []\T1/zi4/m/it/10 signature(x = "matrix",y = "pMatrix") \T1/ptm/m/n/10 and othe r sig-na-tures (use Underfull \hbox (badness 10000) in paragraph at lines 8858--8861 []\T1/zi4/m/it/10 signature(from = "numeric",to = "pMatrix")\T1/ptm/m/n/10 : a user con-ve-nience, to al-low [2361] [2362] [2363] [2364]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.qr}) has been already used, duplicate ignored \relax l.9090 \aliasA{qr}{qr-methods}{qr} [2365] [2366] [2367] [2368]pdfTeX warning (e xt4): destination with the same identifier (name{Rfn.rcond}) has been already u sed, duplicate ignored \relax l.9418 ... the Reciprocal Condition Number}{rcond} [2369] [2370] [2371] [2372] [2373] Underfull \hbox (badness 2351) in paragraph at lines 9722--9730 []\T1/ptm/m/n/10 The al-go-rithm first sam-ples ``en-coded'' $\OT1/cmr/m/n/10 ( \OML/cmm/m/it/10 i; j\OT1/cmr/m/n/10 )$\T1/ptm/m/n/10 s with-out re-place-ment, via one di-men-sional Underfull \hbox (badness 1852) in paragraph at lines 9722--9730 \T1/ptm/m/n/10 in-dices, if not \T1/zi4/m/it/10 symmetric [][]sample.int[][][]( nrow*ncol,nnz)\T1/ptm/m/n/10 , then---if \T1/zi4/m/it/10 rand.x \T1/ptm/m/n/10 is not \T1/zi4/m/it/10 NULL\T1/ptm/m/n/10 --- Underfull \hbox (badness 2343) in paragraph at lines 9722--9730 \T1/ptm/m/n/10 gets \T1/zi4/m/it/10 x <-rand.x(nnz) \T1/ptm/m/n/10 and calls [] []\T1/zi4/m/it/10 sparseMatrix[][][](i=i,j=j,x=x,..)\T1/ptm/m/n/10 . When \T1/z i4/m/it/10 rand.x=NULL\T1/ptm/m/n/10 , [2374] [2375] [2376] [2377]pdfTeX warning (ext4): destination with the same ide ntifier (name{Rfn.solve}) has been already used, duplicate ignored \relax l.9995 \aliasA{solve}{solve-methods}{solve} [2378] Underfull \hbox (badness 10000) in paragraph at lines 10158--10165 []\T1/ptm/m/n/10 with ex-tra ar-gu-ment list \T1/zi4/m/it/10 ( sparse = [2379] Underfull \hbox (badness 4403) in paragraph at lines 10219--10222 []\T1/ptm/m/n/10 , and sim-i-lar \T1/zi4/m/it/10 b\T1/ptm/m/n/10 , in-clud-ing \T1/zi4/m/it/10 "missing"\T1/ptm/m/n/10 , and Underfull \hbox (badness 10000) in paragraph at lines 10289--10292 []\T1/ptm/m/n/10 Construct a sparse model or ``de-sign'' ma-trix, from a for-mu la and data frame [2380] Underfull \hbox (badness 10000) in paragraph at lines 10325--10328 []\T1/ptm/m/n/10 character string or \T1/zi4/m/it/10 NULL \T1/ptm/m/n/10 or (co -er-ca-ble to) Underfull \hbox (badness 10000) in paragraph at lines 10336--10340 []\T1/ptm/m/n/10 should fac-tors have un-used lev-els dropped? The de-fault for [2381] [2382] [2383] [2384] [2385] [2386] [2387] [2388] Underfull \hbox (badness 10000) in paragraph at lines 10917--10925 []\T1/zi4/m/it/10 (object = "sparseMatrix",uniqT=FALSE)\T1/ptm/m/n/10 : Re-turn s an ob-ject of S3 class Underfull \hbox (badness 1796) in paragraph at lines 10917--10925 \T1/zi4/m/it/10 "sparseSummary" \T1/ptm/m/n/10 which is ba-si-cally a [][]\T1/z i4/m/it/10 data.frame[][][] \T1/ptm/m/n/10 with columns \T1/zi4/m/it/10 (i,j,x) \T1/ptm/m/n/10 (or just Underfull \hbox (badness 10000) in paragraph at lines 10942--10950 []\T1/zi4/m/it/10 signature(from = "factor",to = "sparseMatrix")\T1/ptm/m/n/10 : Co-er-cion of a fac-tor to Underfull \hbox (badness 1112) in paragraph at lines 10942--10950 \T1/zi4/m/it/10 "sparseMatrix" \T1/ptm/m/n/10 pro-duces the ma-trix of in-di-ca -tor \T1/ptm/b/n/10 rows \T1/ptm/m/n/10 stored as an ob-ject of class [2389]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.qr. Q}) has been already used, duplicate ignored \relax l.11008 \aliasA{qr.Q}{sparseQR-class}{qr.Q} [2390] [2391] Underfull \hbox (badness 5036) in paragraph at lines 11194--11196 []\T1/ptm/m/n/10 vector of the non zero en-tries; may be miss-ing in which case a [2392] [2393] Underfull \hbox (badness 10000) in paragraph at lines 11401--11404 []\T1/zi4/m/it/10 signature(x = "sparseVector") \T1/ptm/m/n/10 re-peat \T1/zi4/ m/it/10 x\T1/ptm/m/n/10 , with the same ar-gu-ment list [2394] Underfull \vbox (badness 10000) has occurred while \output is active [2395] [2396] [2397] Underfull \hbox (badness 10000) in paragraph at lines 11670--11675 []\T1/ptm/m/n/10 The va-lid-ity checks do not re-quire a sym-met-ric \T1/zi4/m/ it/10 Dimnames \T1/ptm/m/n/10 slot, so it can be [2398] Underfull \hbox (badness 2057) in paragraph at lines 11750--11752 []\T1/ptm/m/n/10 These are generic func-tions with sev-eral meth-ods for dif-fe r-ent ma-trix classes, use e.g., [2399] [2400] Underfull \hbox (badness 10000) in paragraph at lines 11919--11924 []\T1/ptm/m/n/10 Note that all \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 spMatrix[][][] \T1/ptm/m/n/10 and [][]\T1/zi4/m/it/10 sparseMatrix[] [][](*,repr="T") \T1/ptm/m/n/10 con-struc-tors for Underfull \hbox (badness 1831) in paragraph at lines 11925--11931 []\T1/ptm/m/n/10 For con-ve-nience, meth-ods for some op-er-a-tions such as \T1 /zi4/m/it/10 %*% \T1/ptm/m/n/10 and \T1/zi4/m/it/10 crossprod \T1/ptm/m/n/10 ar e de-fined [2401] Underfull \hbox (badness 1902) in paragraph at lines 11960--11964 []\T1/ptm/m/n/10 Note that \T1/zi4/m/it/10 new(.)\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 spMatrix[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/it/10 sparseMatrix[][][] \T1/ptm/m/n/10 con-struc-tors for \T1/zi4/m/it/10 "dgTMatrix" \T1/ptm/m/n/10 (a nd other [2402] [2403] [2404] [2405] [2406] [2407] [2408] Underfull \hbox (badness 6910) in paragraph at lines 12557--12559 []\T1/ptm/m/n/10 is cur-rently a sim-ple fall-back [2409] Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12604. Package hyperref Warning: Glyph not defined in PU encoding, (hyperref) removing `\Rpercent' on input line 12604. [2410] [2411]) (./boot-pkg.tex [2412] Chapter 18. [2413] [2414] [2415] [2416] [2417] [2418] [2419] [2420] [2421] [2422] Underfull \hbox (badness 1297) in paragraph at lines 799--809 []\T1/ptm/m/n/10 Where random-number gen-er-a-tion is done in the worker pro-ce sses, the de-fault be-haviour [2423] Underfull \hbox (badness 1881) in paragraph at lines 826--828 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2424] Underfull \vbox (badness 10000) has occurred while \output is active [2425] [2426] Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 []\T1/ptm/m/n/10 A vec-tor of char-ac-ter strings rep-re-sent-ing the type of i n-ter- Underfull \hbox (badness 10000) in paragraph at lines 1068--1072 \T1/ptm/m/n/10 vals re-quired. The value should be any sub-set of the val-ues Underfull \hbox (badness 1859) in paragraph at lines 1068--1072 \T1/zi4/m/it/10 c("norm","basic","stud","perc","bca") \T1/ptm/m/n/10 or sim-ply \T1/zi4/m/it/10 "all" \T1/ptm/m/n/10 which will [2427] Underfull \hbox (badness 2150) in paragraph at lines 1105--1111 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est. The de-fa ult value is [2428] [2429] [2430] [2431] Underfull \hbox (badness 1571) in paragraph at lines 1445--1447 []\T1/ptm/m/n/10 Rawlings, J.O. (1988) \T1/ptm/m/it/10 Ap-plied Re-gres-sion An al-y-sis\T1/ptm/m/n/10 . Wadsworth and Brooks/Cole Statis- [2432] [2433] [2434] [2435] [2436] [2437] Underfull \hbox (badness 1005) in paragraph at lines 1800--1807 []\T1/ptm/m/n/10 The sim-u-la-tion type. Pos-si-ble types are \T1/zi4/m/it/10 " ordinary" \T1/ptm/m/n/10 (case re-sam-pling), [2438] [2439] Underfull \vbox (badness 10000) has occurred while \output is active [2440] Underfull \hbox (badness 7379) in paragraph at lines 2084--2086 []\T1/ptm/m/n/10 The length of time (in months) that the res-i-dent spent at Ch an-ning House. [2441] [2442] [2443] [2444] Underfull \hbox (badness 1565) in paragraph at lines 2338--2343 []\T1/ptm/m/n/10 The ob-served value of the statis-tic of in-ter-est on the ori g-i-nal data set [2445] Underfull \hbox (badness 1881) in paragraph at lines 2432--2434 []\T1/ptm/m/n/10 Davison, A.C., Hink-ley, D.V. and Schecht-man, E. (1986) Ef-fi -cient boot-strap sim-u-la-tion. [2446] [2447] Underfull \hbox (badness 2970) in paragraph at lines 2536--2540 []\T1/ptm/m/n/10 The un-bi-ased es-ti-ma-tor uses a mul-ti-plier of \T1/zi4/m/i t/10 n/((n-1)*(n-2)) \T1/ptm/m/n/10 where \T1/zi4/m/it/10 n \T1/ptm/m/n/10 is t he sam-ple Underfull \hbox (badness 2310) in paragraph at lines 2536--2540 \T1/ptm/m/n/10 size, if \T1/zi4/m/it/10 unbiased \T1/ptm/m/n/10 is \T1/zi4/m/it /10 FALSE \T1/ptm/m/n/10 then a mul-ti-plier of \T1/zi4/m/it/10 1/n \T1/ptm/m/n /10 is used. This is mul-ti-plied by [2448] [2449] [2450] [2451] [2452] [2453] [2454] [2455] [2456] [2457] [2458] [2459] [2460] [2461] [2462] [2463] [2464] [2465] [2466] [2467] [2468] [2469] [2470] Underfull \hbox (badness 10000) in paragraph at lines 4190--4192 []\T1/ptm/m/n/10 The quan-tiles at which the plots are re-quired. The de-fault is [2471] [2472] [2473] [2474] [2475] [2476] [2477] [2478] [2479] [2480] [2481] Underfull \hbox (badness 3000) in paragraph at lines 4959--4962 []\T1/ptm/m/n/10 The in-dex of the statis-tic of in-ter-est within the out-put of a call to [2482] [2483] [2484] [2485] Underfull \hbox (badness 2293) in paragraph at lines 5238--5241 []\T1/ptm/m/n/10 An in-te-ger giv-ing the num-ber of classes to be used in the boot-strap Underfull \hbox (badness 1668) in paragraph at lines 5238--5241 \T1/ptm/m/n/10 his-togram. The de-fault is the in-te-ger be-tween 10 and 100 cl os-est to [2486] [2487] [2488] [2489] [2490] [2491] [2492] [2493] [2494] [2495] [2496] Underfull \hbox (badness 4954) in paragraph at lines 6021--6024 []\T1/ptm/m/n/10 The re-turned value is an ob-ject of class \T1/zi4/m/it/10 "sa ddle.distn"\T1/ptm/m/n/10 . See the help file for [2497] [2498] [2499] [2500] [2501] [2502] [2503] [2504] [2505] Underfull \hbox (badness 1596) in paragraph at lines 6742--6746 []\T1/ptm/m/n/10 A char-ac-ter string in-di-cat-ing the type of sec-ond ar-gu-m ent ex-pected by [2506] [2507] [2508] [2509] [2510] [2511] [2512] [2513] [2514] [2515]) (./class-pkg.tex [2516] Chapter 19. [2517] [2518] [2519] [2520] [2521] [2522] [2523] [2524] [2525] [2526] [2527] [2528] [2529] [2530] [2531] [2532]) (./cluster-pkg.tex Chapter 20. [2533] [2534] [2535] [2536] [2537] Underfull \vbox (badness 7777) has occurred while \output is active [2538] [2539] [2540] [2541] [2542] Underfull \hbox (badness 4144) in paragraph at lines 691--694 []\T1/ptm/m/n/10 Setting this to \T1/zi4/m/it/10 FALSE \T1/ptm/m/n/10 saves mem -ory (and hence time), but dis-ables [2543] [2544] Underfull \hbox (badness 1412) in paragraph at lines 783--788 []\T1/ptm/m/n/10 Kaufman and Rousseeuw (see [][]\T1/zi4/m/it/10 agnes[][][]\T1/ ptm/m/n/10 ), orig-i-nally. Met-ric \T1/zi4/m/it/10 "jaccard"\T1/ptm/m/n/10 : K amil Ko-zlowski [2545] Underfull \hbox (badness 10000) in paragraph at lines 881--883 []\T1/ptm/m/n/10 list with sil-hou-ette width in-for-ma-tion for the best sam-p le, see [2546] [2547] Underfull \hbox (badness 10000) in paragraph at lines 992--994 []\T1/ptm/m/n/10 simply cor-re-sponds to the global max-i-mum, i.e., is Underfull \hbox (badness 1342) in paragraph at lines 1006--1010 []\T1/ptm/m/n/10 This, the de-fault, has been pro-posed by Mar-tin Maech-ler in 2012, [2548] [2549] [2550] Underfull \hbox (badness 6110) in paragraph at lines 1207--1211 []\T1/ptm/m/n/10 when \T1/zi4/m/it/10 x \T1/ptm/m/n/10 does not have a \T1/zi4/ m/it/10 diss \T1/ptm/m/n/10 nor a \T1/zi4/m/it/10 data \T1/ptm/m/n/10 com-po-ne nt, e.g., for [2551] [2552] [2553] Underfull \hbox (badness 10000) in paragraph at lines 1476--1479 [2554] [2555] Underfull \hbox (badness 2503) in paragraph at lines 1588--1591 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "hclust" \T1/ptm/m/n/10 or \T1/zi4/m/it/10 "twins"\T1/ptm/m/n/10 , i.e., typ-i-cally the re-sult of [2556] [2557] [2558] [2559] [2560] [2561] [2562] [2563] Underfull \hbox (badness 10000) in paragraph at lines 2182--2185 Underfull \hbox (badness 10000) in paragraph at lines 2196--2202 [][][]\T1/zi4/m/it/10 predict.ellipsoid[][][] \T1/ptm/m/n/10 which is also the [][]\T1/zi4/m/it/10 predict[][][] \T1/ptm/m/n/10 method for \T1/zi4/m/it/10 ell ipsoid \T1/ptm/m/n/10 ob-jects. [2564] [2565] [2566] [2567] Underfull \hbox (badness 6675) in paragraph at lines 2431--2433 []\T1/ptm/m/n/10 list with sil-hou-ette in-for-ma-tion of the near-est crisp cl us-ter-ing, see [2568] [2569] [2570] [2571] [2572] [2573] [2574] Underfull \hbox (badness 2980) in paragraph at lines 2961--2965 [][][]\T1/zi4/m/it/10 agnes[][][] \T1/ptm/m/n/10 for back-ground and ref-er-enc es; [][]\T1/zi4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cl ara[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 daisy[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [2575] [2576] [2577] [2578] [2579] [2580] Underfull \hbox (badness 1142) in paragraph at lines 3302--3305 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2581] [2582] Underfull \hbox (badness 1142) in paragraph at lines 3421--3424 []\T1/ptm/m/n/10 graphical pa-ram-e-ters (see [][]\T1/zi4/m/it/10 par[][][]\T1/ ptm/m/n/10 ) may also be sup-plied and are passed to [2583] [2584] [2585] Underfull \hbox (badness 2582) in paragraph at lines 3644--3649 [][][]\T1/zi4/m/it/10 partition.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 clusplot.partition[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clusplot.default [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pam[][][]\T1/ptm/m/n/10 , [][]\T1/zi 4/m/it/10 pam.object[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 clara[][][]\T1/p tm/m/n/10 , [2586] Underfull \hbox (badness 3209) in paragraph at lines 3706--3711 []\T1/ptm/m/n/10 Note that cur-rently the method func-tion sim-ply calls \T1/zi 4/m/it/10 plot([][]as.hclust[][][](x),...)\T1/ptm/m/n/10 , which Underfull \hbox (badness 8019) in paragraph at lines 3706--3711 \T1/ptm/m/n/10 dis-patches to [][]\T1/zi4/m/it/10 plot.hclust[][][](..)\T1/ptm/ m/n/10 . If more flex-i-ble plots are needed, con-sider \T1/zi4/m/it/10 xx [2587] [2588] [2589] [2590] [2591] Underfull \hbox (badness 10000) in paragraph at lines 3998--4000 []\T1/ptm/m/n/10 a \T1/zi4/m/it/10 dissimilarity \T1/ptm/m/n/10 ob-ject or a \T 1/zi4/m/it/10 summary.dissimilarity \T1/ptm/m/n/10 one for [2592] [2593] [2594] [2595] Underfull \hbox (badness 2626) in paragraph at lines 4227--4232 []\T1/ptm/m/n/10 arguments passed [][]\T1/zi4/m/it/10 barplot[][][]()\T1/ptm/m/ n/10 ; note that the de-fault used to be \T1/zi4/m/it/10 col = [2596] Underfull \hbox (badness 1383) in paragraph at lines 4305--4310 []\T1/ptm/m/n/10 While \T1/zi4/m/it/10 silhouette() \T1/ptm/m/n/10 is \T1/ptm/m /it/10 in-trin-sic \T1/ptm/m/n/10 to the [][]\T1/zi4/m/it/10 partition[][][] \T 1/ptm/m/n/10 clus-ter-ings, and hence has a (triv-ial) [2597] [2598] [2599] [2600] [2601] [2602] [2603] Underfull \hbox (badness 10000) in paragraph at lines 4748--4750 []\T1/ptm/m/n/10 Sample data set ac-com-pa-ny-ing the ref-er-ence be-low (file `\T1/zi4/m/it/10 xclara.dat\T1/ptm/m/n/10 ' in side [2604] [2605]) (./codetools-pkg.tex [2606] Chapter 21. [2607] [2608] [2609] [2610] [2611]) (./foreign-pkg.tex [2612] Chapter 22. [2613] Underfull \hbox (badness 10000) in paragraph at lines 78--80 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2614] [2615] [2616] [2617] [2618] [2619] [2620] Underfull \hbox (badness 10000) in paragraph at lines 505--514 []\T1/ptm/m/n/10 character: what to do with du-pli-cated value la-bels for dif- fer- Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 ent lev-els. For \T1/zi4/m/it/10 "append" \T1/ptm/m/n/10 (the de -fault), the first orig-i-nal value Underfull \hbox (badness 10000) in paragraph at lines 505--514 \T1/ptm/m/n/10 la-bel is kept while fur-ther du-pli-cated la-bels are re-named to Underfull \hbox (badness 7133) in paragraph at lines 550--558 []\T1/ptm/m/n/10 URL [][]$\T1/zi4/m/it/10 https : / / docs . microsoft . com / en-[]us / windows / win32 / intl / code-[]page-[]identifiers$[][] [2621] Overfull \hbox (6.73795pt too wide) in paragraph at lines 624--624 []\T1/zi4/m/n/9 ### Expect lots of warnings as value labels (corresponding to R factor labels) are uncomplete,[] [2622] [2623] [2624] Underfull \hbox (badness 10000) in paragraph at lines 812--813 [2625] [2626] [2627] Underfull \hbox (badness 10000) in paragraph at lines 990--992 []\T1/ptm/m/n/10 Attribute-Relation File For-mat [][]$\T1/zi4/m/it/10 https : / / waikato . github . io / weka-[]wiki / formats _ and _ [2628] [2629] [2630] [2631] Underfull \hbox (badness 10000) in paragraph at lines 1270--1276 []\T1/ptm/m/n/10 The work for this func-tion is done by \T1/zi4/m/it/10 foreign :::writeForeignStata\T1/ptm/m/n/10 , [2632] [2633]) (./lattice-pkg.tex [2634] Chapter 23. [2635] Underfull \hbox (badness 1484) in paragraph at lines 117--121 []\T1/ptm/m/n/10 Bell Lab's Trel-lis Page con-tains sev-eral doc-u-ments out-li n-ing the use of Trel-lis graph-ics; Underfull \hbox (badness 10000) in paragraph at lines 117--121 \T1/zi4/m/it/10 20081020164041 / http : / / cm . bell-[]labs . com / cm / ms / departments / sia / project / trellis / [2636] [2637] [2638] [2639] [2640] [2641] [2642] [2643] [2644] [2645] [2646] [2647] [2648] [2649] [2650] Underfull \hbox (badness 1062) in paragraph at lines 1398--1402 \T1/ptm/m/n/10 no-ta-tion for the x and y axes re-spec-tively. See doc-u-men-ta -tion for [2651] Underfull \vbox (badness 4416) has occurred while \output is active [2652] Underfull \hbox (badness 1803) in paragraph at lines 1566--1583 [][][]\T1/zi4/m/it/10 Lattice[][][] \T1/ptm/m/n/10 for an overview of the pack- age, as well as [][]\T1/zi4/m/it/10 barchart.table[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 print.trellis[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 1566--1583 [][]\T1/zi4/m/it/10 panel.stripplot[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 p anel.superpose[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 panel.loess[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 panel.average[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 strip.default[][][]\T1/ptm/m/n/10 , [2653] [2654] [2655] Underfull \hbox (badness 3009) in paragraph at lines 1725--1727 []\T1/ptm/m/n/10 additional ar-gu-ments passed to [][]\T1/zi4/m/it/10 xyplot[][ ][]\T1/ptm/m/n/10 , which may pass them on to Underfull \hbox (badness 6808) in paragraph at lines 1755--1759 []\T1/ptm/m/n/10 graphical ar-gu-ments, which are pro-cessed and even-tu-ally p assed to [2656] [2657] [2658] [2659] [2660] Underfull \hbox (badness 10000) in paragraph at lines 2141--2144 []\T1/ptm/m/n/10 When \T1/zi4/m/it/10 breaks \T1/ptm/m/n/10 is un-spec-i-fied, the value of [2661] [2662] [2663] [2664] [2665] [2666] [2667] [2668] [2669] [2670] Underfull \hbox (badness 2781) in paragraph at lines 2848--2850 []\T1/ptm/m/n/10 A color ramp spec-i-fi-ca-tion, as in the \T1/zi4/m/it/10 col. regions \T1/ptm/m/n/10 ar-gu-ment in [2671] Underfull \hbox (badness 2486) in paragraph at lines 2970--2974 []\T1/ptm/m/n/10 Other use-ful ar-gu-ments are men-tioned in the help page for the de-fault panel func-tion [2672] [2673] [2674] [2675] [2676] [2677] [2678]pdfTeX warning (ext4): destinat ion with the same identifier (name{Rfn.parallel}) has been already used, duplic ate ignored \relax l.3444 \aliasA{parallel}{B\_08\_splom}{parallel} [2679] [2680] [2681] [2682] [2683] [2684] [2685] Underfull \hbox (badness 5696) in paragraph at lines 3935--3939 []\T1/ptm/m/n/10 A pos-si-ble use of this ar-gu-ment is to change the de-fault set-tings Underfull \hbox (badness 10000) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 by spec-i-fy-ing \T1/zi4/m/it/10 lattice.options(default.theme = "col.whitebg")\T1/ptm/m/n/10 . Underfull \hbox (badness 2435) in paragraph at lines 3935--3939 \T1/ptm/m/n/10 For back-compatibility, this is ini-tially (when lat-tice is loa ded) set to [2686] [2687] Underfull \hbox (badness 1173) in paragraph at lines 4074--4078 []\T1/ptm/m/n/10 A char-ac-ter string giv-ing the name of a com-po-nent. If un- spec-i-fied in Underfull \hbox (badness 3219) in paragraph at lines 4101--4103 []\T1/ptm/m/n/10 A log-i-cal flag, in-di-cat-ing whether a warn-ing should be i s-sued when [2688] [2689] [2690] Underfull \hbox (badness 3492) in paragraph at lines 4297--4307 []\T1/ptm/m/n/10 A color spec-i-fi-ca-tion. \T1/zi4/m/it/10 col \T1/ptm/m/n/10 is used for com-po-nents \T1/zi4/m/it/10 "plot.symbol"\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4322--4325 []\T1/ptm/m/n/10 fill color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 plo t.symbol\T1/ptm/m/n/10 , \T1/zi4/m/it/10 plot.polygon\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 4325--4327 []\T1/ptm/m/n/10 border color, ap-pli-ca-ble for com-po-nents \T1/zi4/m/it/10 p lot.polygon \T1/ptm/m/n/10 and [2691] [2692] [2693] [2694] [2695] [2696] [2697] [2698] [2699] [2700] Underfull \hbox (badness 6157) in paragraph at lines 5048--5051 []\T1/zi4/m/it/10 plot.shingle \T1/ptm/m/n/10 dis-plays the ranges of shin-gles via rect-an-gles. \T1/zi4/m/it/10 print.shingle \T1/ptm/m/n/10 and [2701] [2702] [2703] [2704] [2705] [2706] Underfull \hbox (badness 10000) in paragraph at lines 5501--5504 []\T1/ptm/m/n/10 logical, spec-i-fy-ing whether the la-bels etc should be hor-i -zon-tal. Underfull \hbox (badness 5592) in paragraph at lines 5501--5504 \T1/zi4/m/it/10 horizontal=FALSE \T1/ptm/m/n/10 is use-ful for strips on the le ft of pan-els us-ing [2707] [2708] [2709] [2710] [2711] Underfull \hbox (badness 4805) in paragraph at lines 5863--5867 []\T1/ptm/m/n/10 logical, whether the view-port be-ing as-signed fo-cus should be high- Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 []\T1/ptm/m/n/10 For \T1/zi4/m/it/10 panel.identify.qqmath\T1/ptm/m/n/10 , ex-t ra pa-ram-e-ters are passed on to Underfull \hbox (badness 1226) in paragraph at lines 5874--5881 \T1/zi4/m/it/10 panel.identify\T1/ptm/m/n/10 . For \T1/zi4/m/it/10 panel.identi fy\T1/ptm/m/n/10 , ex-tra ar-gu-ments are treated as Underfull \hbox (badness 2418) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 graph-i-cal pa-ram-e-ters and are used for la-belling. For \T1/z i4/m/it/10 trellis.focus Underfull \hbox (badness 10000) in paragraph at lines 5874--5881 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 trellis.switchFocus\T1/ptm/m/n/10 , these ar e used (in com-bi-na-tion with Underfull \hbox (badness 1259) in paragraph at lines 5874--5881 [][]\T1/zi4/m/it/10 lattice.options[][][]\T1/ptm/m/n/10 ) for high-light-ing th e cho-sen view-port if so re-quested. [2712] [2713] [2714] [2715] Underfull \hbox (badness 4242) in paragraph at lines 6174--6179 []\T1/ptm/m/n/10 Graphical pa-ram-e-ters for the bars. By de-fault, the trel-li s pa-ram-e- Underfull \hbox (badness 2529) in paragraph at lines 6174--6179 \T1/ptm/m/n/10 ter \T1/zi4/m/it/10 plot.polygon \T1/ptm/m/n/10 is used if there is no group-ing vari-able, oth-er-wise [2716] [2717] Underfull \hbox (badness 2310) in paragraph at lines 6290--6295 []\T1/ptm/m/n/10 Creates Box and Whisker plot of \T1/zi4/m/it/10 x \T1/ptm/m/n/ 10 for ev-ery level of \T1/zi4/m/it/10 y \T1/ptm/m/n/10 (or the other way round if [2718] [2719] [2720] [2721] [2722] [2723] [2724] [2725] [2726] [2727] [2728] Underfull \hbox (badness 3168) in paragraph at lines 7072--7076 \T1/ptm/m/n/10 to know what ar-gu-ments this func-tion is passed when called. U se [2729] [2730] [2731] [2732] Underfull \hbox (badness 2012) in paragraph at lines 7343--7346 []\T1/ptm/m/n/10 Further ar-gu-ments, of-ten graph-i-cal pa-ram-e-ters, even-tu -ally passed on to [2733] [2734] Underfull \hbox (badness 3333) in paragraph at lines 7515--7517 []\T1/ptm/m/n/10 default colours are ob-tained from \T1/zi4/m/it/10 plot.symbol \T1/ptm/m/n/10 and \T1/zi4/m/it/10 plot.line \T1/ptm/m/n/10 us-ing [2735] [2736] [2737] Underfull \vbox (badness 10000) has occurred while \output is active [2738] [2739] [2740] Underfull \hbox (badness 1436) in paragraph at lines 7929--7935 []\T1/ptm/m/n/10 A log-i-cal flag de-ter-min-ing whether the de-fault graph-i-c al pa-ram-e-ters for [2741] [2742] [2743] [2744] [2745] [2746] [2747] [2748] Underfull \hbox (badness 10000) in paragraph at lines 8487--8490 []\T1/ptm/m/n/10 Extra ar-gu-ments. Passed down to \T1/zi4/m/it/10 panel.superp ose \T1/ptm/m/n/10 from [2749] Underfull \hbox (badness 1092) in paragraph at lines 8533--8535 []\T1/ptm/m/n/10 Deepayan Sarkar \T1/zi4/m/it/10 \T1/ptm/m/n/10 (\T1/zi4/m/it/10 panel.superpose.2 \T1/ptm/m/n/10 orig-i-nally con- [2750] [2751] Underfull \hbox (badness 3895) in paragraph at lines 8694--8697 []\T1/ptm/m/n/10 details of his-togram cal-cu-la-tions. \T1/zi4/m/it/10 type \T 1/ptm/m/n/10 has a dif-fer-ent mean-ing in [2752] Underfull \hbox (badness 1515) in paragraph at lines 8770--8774 []\T1/ptm/m/n/10 numeric vec-tor of length two, rep-re-sent-ing prob-a-bil-i-ti es. If used with [2753] [2754] Underfull \hbox (badness 6316) in paragraph at lines 8876--8881 []\T1/ptm/m/n/10 which packet (counted ac-cord-ing to the packet or-der, de-scr ibed in Underfull \hbox (badness 5908) in paragraph at lines 8893--8896 []\T1/ptm/m/n/10 list, sim-i-lar to those pro-duced by \T1/zi4/m/it/10 xscale.c omponents.default \T1/ptm/m/n/10 and [2755] [2756] [2757] [2758] Overfull \hbox (1.94879pt too wide) in paragraph at lines 9181--9185 []\T1/ptm/m/n/10 returns a list with sev-eral com-po-nents, in-clud-ing \T1/zi4 /m/it/10 left,right,left.name,right.name,condition [2759] [2760] [2761] [2762] [2763] [2764] [2765] Underfull \hbox (badness 2310) in paragraph at lines 9639--9643 []\T1/ptm/m/n/10 Factor with lev-els \T1/zi4/m/it/10 "Svansota"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "No. 462"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Manchuria"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "No. 475"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Velvet"\T1/p tm/m/n/10 , Underfull \hbox (badness 3701) in paragraph at lines 9644--9647 []\T1/ptm/m/n/10 Factor with 6 lev-els: \T1/zi4/m/it/10 "Grand Rapids"\T1/ptm/m /n/10 , \T1/zi4/m/it/10 "Duluth"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "University Fa rm"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "Morris"\T1/ptm/m/n/10 , [2766] [2767] [2768]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.melanoma}) has been already used, duplicate ignored \relax l.9870 \aliasA{melanoma}{H\_melanoma}{melanoma} [2769] [2770] [2771] Underfull \hbox (badness 4144) in paragraph at lines 10094--10097 []\T1/ptm/m/n/10 Rural Health Re-form Pol-icy Re-search Cen-ter. _Ex-plor-ing R u-ral and Ur-ban Mor-tal- Underfull \hbox (badness 1509) in paragraph at lines 10094--10097 \T1/ptm/m/n/10 ity Dif-fer-ences_, Au-gust 2015 Bethesda, MD. [][]$\T1/zi4/m/it /10 https : / / ruralhealth . und . edu / projects / [2772] [2773]) (./mgcv-pkg.tex [2774] Chapter 24. [2775] [2776] [2777] Underfull \hbox (badness 1142) in paragraph at lines 184--188 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 209--214 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2778] [2779] [2780] Underfull \vbox (badness 5345) has occurred while \output is active [2781] Underfull \hbox (badness 10000) in paragraph at lines 377--384 [][][]\T1/zi4/m/it/10 mgcv.parallel[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 m gcv-package[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gamObject[][][]\T1/ptm/m/ n/10 , [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 smooth.terms[][][]\T1/ptm/m/n/10 , Underfull \hbox (badness 7168) in paragraph at lines 377--384 [][]\T1/zi4/m/it/10 linear.functional.terms[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m /it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][] [][]predict.gam[][] []\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.gam[][][]\T1/ptm/m/n/10 , [][]\T1/z i4/m/it/10 summary.gam[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gam.side[][][] \T1/ptm/m/n/10 , [2782] [2783] [2784] [2785] [2786] Underfull \hbox (badness 1406) in paragraph at lines 702--703 []\T1/ptm/m/n/10 The MKL BLAS is mut-lithreaded by de-fault. Un-der linux set-t ing en-vi-ron-ment vari-able [2787] [2788] [2789] Underfull \hbox (badness 1158) in paragraph at lines 812--814 []\T1/ptm/m/n/10 Choosing the ba-sis di-men-sion, and check-ing the choice, whe n us-ing pe-nal-ized re-gres-sion Underfull \hbox (badness 1259) in paragraph at lines 875--876 []\T1/ptm/m/n/10 Wood, S.N. (2017) Gen-er-al-ized Ad-di-tive Mod-els: An In-tro -duc-tion with R (2nd edi-tion). [2790] [2791] [2792] [2793] [2794] Underfull \hbox (badness 1281) in paragraph at lines 1159--1160 []\T1/zi4/m/it/10 deviance\T1/ptm/m/n/10 ,\T1/zi4/m/it/10 martingale\T1/ptm/m/n /10 ,\T1/zi4/m/it/10 score\T1/ptm/m/n/10 , or \T1/zi4/m/it/10 schoenfeld \T1/pt m/m/n/10 resid-u-als can be ex-tracted. See Klein amd [2795] [2796] Underfull \vbox (badness 10000) has occurred while \output is active [2797] Underfull \vbox (badness 10000) has occurred while \output is active [2798] [2799] Underfull \vbox (badness 10000) has occurred while \output is active [2800] [2801] [2802] [2803] [2804] [2805] [2806] [2807] [2808] [2809] [2810] [2811] [2812] [2813] [2814] [2815] Underfull \hbox (badness 1142) in paragraph at lines 2360--2364 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from Underfull \hbox (badness 1043) in paragraph at lines 2386--2391 \T1/ptm/m/n/10 un-known scale pa-ram-e-ter and Mal-lows' Cp/UBRE/AIC for known scale. [2816] [2817] [2818] [2819] [2820] [2821] Underfull \vbox (badness 10000) has occurred while \output is active [2822] Underfull \vbox (badness 10000) has occurred while \output is active [2823] [2824] [2825] [2826] [2827] [2828] [2829] [2830] [2831] [2832] [2833] [2834] [2835] [2836] [2837] [2838] [2839] Underfull \hbox (badness 10000) in paragraph at lines 3821--3825 []\T1/ptm/m/n/10 Random ef-fects can be added to \T1/zi4/m/it/10 gam \T1/ptm/m/ n/10 mod-els us-ing \T1/zi4/m/it/10 s(...,bs="re") \T1/ptm/m/n/10 terms (see [2840] [2841] Underfull \vbox (badness 10000) has occurred while \output is active [2842] [2843] [2844] Underfull \hbox (badness 1184) in paragraph at lines 4107--4111 []\T1/ptm/m/n/10 list of the square root penal-ties: last en-try is root of fix ed penalty, if [2845] [2846] [2847] [2848] [2849] [2850] [2851] [2852] [2853] [2854] [2855] [2856] Underfull \hbox (badness 1142) in paragraph at lines 4828--4832 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2857] Underfull \hbox (badness 1231) in paragraph at lines 4932--4934 []\T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 per-forms poorly with bi-nary data, since it uses PQL. It is bet-ter to use \T1/zi4/m/it/10 gam \T1/ptm/m/n/10 with [2858] [2859] [2860] Underfull \vbox (badness 10000) has occurred while \output is active [2861] [2862] [2863] [2864] Underfull \hbox (badness 2181) in paragraph at lines 5376--5377 []\T1/ptm/m/n/10 one sided for-mula con-tain-ing vari-ables needed for pre-dic- tion, used by [2865] [2866] [2867] [2868] [2869] [2870] [2871] Underfull \hbox (badness 10000) in paragraph at lines 5765--5766 []\T1/ptm/m/n/10 A pre-fit gam ob-ject, as pro-duced by \T1/zi4/m/it/10 gam(... ,fit=FALSE) \T1/ptm/m/n/10 or [2872] [2873] [2874] [2875] [2876] [2877] [2878] [2879] [2880] [2881] [2882] Underfull \hbox (badness 1142) in paragraph at lines 6350--6354 \T1/ptm/m/n/10 ates re-quired by the for-mula. By de-fault the vari-ables are t aken from [2883] [2884] [2885] Underfull \vbox (badness 10000) has occurred while \output is active [2886] [2887] [2888] [2889] Underfull \hbox (badness 1087) in paragraph at lines 6722--6723 []\T1/ptm/m/n/10 If \T1/zi4/m/it/10 rho \T1/ptm/m/n/10 and \T1/zi4/m/it/10 thet a \T1/ptm/m/n/10 were sup-plied then deriva-tives are w.r.t. these. In this cas e, and if [2890] [2891] Underfull \vbox (badness 10000) has occurred while \output is active [2892] Underfull \vbox (badness 10000) has occurred while \output is active [2893] [2894] [2895] [2896] [2897] [2898] [2899] [2900] [2901] [2902] [2903] [2904] [2905] Underfull \hbox (badness 1242) in paragraph at lines 7668--7669 []\T1/ptm/m/n/10 Development of mgcv ver-sion 1.8 was part funded by EP-SRC gra nts EP/K005251/1 and [2906] [2907] [2908] [2909] [2910] [2911] [2912] [2913] [2914] [2915] [2916] Underfull \hbox (badness 6001) in paragraph at lines 8308--8310 []\T1/ptm/m/n/10 Simon N. Wood \T1/zi4/m/it/10 \T1/p tm/m/n/10 mod-i-fied from Ven-ables and Rip-ley's [2917] [2918] [2919] [2920] [2921] [2922] [2923] [2924] [2925] [2926] Underfull \vbox (badness 10000) has occurred while \output is active [2927] [2928] Underfull \hbox (badness 1038) in paragraph at lines 9057--9060 []\T1/ptm/m/n/10 The fol-low-ing func-tions are pro-vided: \T1/zi4/m/it/10 Dim. pdIndot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 coef.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 corMatrix.pdIdnot\T1/ptm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 9057--9060 \T1/zi4/m/it/10 logDet.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdConstruct.pdId not\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdIdnot\T1/ptm/m/n/10 , \T1/zi4/m/ it/10 pdMatrix.pdIdnot\T1/ptm/m/n/10 , [2929] Underfull \hbox (badness 10000) in paragraph at lines 9113--9116 []\T1/ptm/m/n/10 These func-tions (\T1/zi4/m/it/10 pdTens\T1/ptm/m/n/10 , \T1/z i4/m/it/10 pdConstruct.pdTens\T1/ptm/m/n/10 , \T1/zi4/m/it/10 pdFactor.pdTens\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 pdMatrix.pdTens\T1/ptm/m/n/10 , [2930] [2931] [2932] [2933] [2934] [2935] [2936] [2937] [2938] [2939] [2940] Underfull \hbox (badness 1852) in paragraph at lines 9784--9787 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2941] [2942] [2943] Underfull \hbox (badness 1852) in paragraph at lines 9953--9956 []\T1/ptm/m/n/10 To fa-cil-i-tate plot-ting with [][]\T1/zi4/m/it/10 termplot[] [][]\T1/ptm/m/n/10 , if \T1/zi4/m/it/10 object \T1/ptm/m/n/10 pos-sesses an at- tribute \T1/zi4/m/it/10 "para.only" \T1/ptm/m/n/10 and [2944] Underfull \vbox (badness 10000) has occurred while \output is active [2945] Underfull \vbox (badness 10000) has occurred while \output is active [2946] Underfull \hbox (badness 1205) in paragraph at lines 10185--10187 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10185--10187 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for Underfull \hbox (badness 1975) in paragraph at lines 10191--10196 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2947] [2948] Underfull \hbox (badness 1205) in paragraph at lines 10275--10277 []\T1/ptm/m/n/10 A data frame con-tain-ing the val-ues of the (named) co-vari-a tes at which Underfull \hbox (badness 2689) in paragraph at lines 10275--10277 \T1/ptm/m/n/10 the smooth term is to be eval-u-ated. Ex-act re-quire-ments are as for [2949] [2950] [2951] Underfull \hbox (badness 1253) in paragraph at lines 10474--10476 []\T1/ptm/m/n/10 Note that the op-ti-mized smooth-ing pa-ram-e-ter se-lec-tion cri-te-rion re-ported is one of GCV, [2952] [2953] [2954] [2955] [2956] Underfull \hbox (badness 4792) in paragraph at lines 10735--10738 []\T1/ptm/m/n/10 Alternatively, but less straight-for-wardly, the \T1/zi4/m/it/ 10 paraPen \T1/ptm/m/n/10 ar-gu-ment to [][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m /n/10 can be used: Underfull \hbox (badness 10000) in paragraph at lines 10735--10738 \T1/ptm/m/n/10 see [][]\T1/zi4/m/it/10 gam.models[][][]\T1/ptm/m/n/10 . If smoo th-ing pa-ram-e-ter es-ti-ma-tion is by ML or REML (e.g. [2957] [2958] Underfull \hbox (badness 10000) in paragraph at lines 10842--10845 []\T1/ptm/m/n/10 the type of resid-u-als wanted. Usu-ally one of \T1/zi4/m/it/1 0 "deviance"\T1/ptm/m/n/10 , [2959] [2960] [2961] [2962] [2963] [2964] [2965] [2966] [2967] [2968] [2969] Underfull \vbox (badness 10000) has occurred while \output is active [2970] [2971] Underfull \hbox (badness 3861) in paragraph at lines 11628--11631 []\T1/ptm/m/n/10 INTERNAL rou-tine to ap-ply ini-tial Sl re-parameterization to model ma-trix X, or, if [2972] [2973] Underfull \hbox (badness 1320) in paragraph at lines 11743--11748 \T1/ptm/m/n/10 and \T1/zi4/m/it/10 b.orig = D*b.repara \T1/ptm/m/n/10 (where \T 1/zi4/m/it/10 b.orig \T1/ptm/m/n/10 is the orig-i-nal pa-ram-e-ter vec-tor). If ma- [2974] [2975] Underfull \hbox (badness 1975) in paragraph at lines 11849--11854 []\T1/ptm/m/n/10 Smooth terms in a GAM for-mula are turned into smooth spec-i-f i-ca-tion ob-jects of class [2976] Underfull \hbox (badness 1762) in paragraph at lines 11938--11950 \T1/ptm/m/n/10 plate re-gres-sion splines: see [][]\T1/zi4/m/it/10 tprs[][][]\T 1/ptm/m/n/10 ); \T1/zi4/m/it/10 ts.smooth.spec \T1/ptm/m/n/10 (thin plate re-gr es-sion splines with [2977] [2978] [2979] Underfull \vbox (badness 10000) has occurred while \output is active [2980] Underfull \hbox (badness 7667) in paragraph at lines 12150--12156 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use adap-tive smooths of one or two vari-ables, spec-i-fied via terms like [2981] Underfull \hbox (badness 10000) in paragraph at lines 12191--12192 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2982] [2983] [2984] [2985] [2986] Underfull \hbox (badness 10000) in paragraph at lines 12467--12469 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2987] [2988] Underfull \hbox (badness 10000) in paragraph at lines 12597--12598 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2989] [2990] Underfull \hbox (badness 1436) in paragraph at lines 12735--12742 \T1/ptm/m/n/10 nest-ing of the smooth within the fac-tor. Note how-ever that: i ) \T1/zi4/m/it/10 gamm \T1/ptm/m/n/10 only al-lows one [2991] [2992] Underfull \hbox (badness 10000) in paragraph at lines 12830--12831 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [2993] [2994] [2995] [2996] [2997] [2998] [2999] Underfull \vbox (badness 10000) has occurred while \output is active [3000] [3001] [3002] Underfull \hbox (badness 10000) in paragraph at lines 13429--13435 []\T1/ptm/m/n/10 A smooth spec-i-fi-ca-tion ob-ject as pro-duced by a Underfull \hbox (badness 1292) in paragraph at lines 13429--13435 \T1/zi4/m/it/10 s(...,bs="so",xt=list(bnd=bnd,...)) \T1/ptm/m/n/10 term in a \T 1/zi4/m/it/10 gam \T1/ptm/m/n/10 for-mula. Note [3003] [3004] [3005] Underfull \vbox (badness 10000) has occurred while \output is active [3006] Underfull \vbox (badness 10000) has occurred while \output is active [3007] [3008] Underfull \hbox (badness 10000) in paragraph at lines 13772--13773 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3009] [3010] [3011] [3012] Underfull \hbox (badness 3895) in paragraph at lines 14032--14035 [][][]\T1/zi4/m/it/10 gam[][][] \T1/ptm/m/n/10 can use isotropic smooths of any num-ber of vari-ables, spec-i-fied via terms like [3013] Underfull \hbox (badness 10000) in paragraph at lines 14077--14079 []\T1/ptm/m/n/10 a smooth spec-i-fi-ca-tion ob-ject, usu-ally gen-er-ated by a term [3014] [3015] [3016] [3017] [3018] Underfull \hbox (badness 1371) in paragraph at lines 14351--14357 []\T1/zi4/m/it/10 bs="ad" \T1/ptm/m/n/10 Uni-vari-ate and bi-vari-ate adap-tive smooths are avail-able (see [3019] Underfull \hbox (badness 10000) in paragraph at lines 14391--14395 [][][]\T1/zi4/m/it/10 s[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 te[][][]\T1/p tm/m/n/10 , [][]\T1/zi4/m/it/10 t2[][][] [][]tprs[][][]\T1/ptm/m/n/10 ,[][]\T1/ zi4/m/it/10 Duchon.spline[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 cubic.regre ssion.spline[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 p.spline[][][]\T1/ptm/m/n /10 , Underfull \hbox (badness 10000) in paragraph at lines 14391--14395 [][]\T1/zi4/m/it/10 mrf[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 soap[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 Spherical.Spline[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 adaptive.smooth[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 user.de fined.smooth[][][]\T1/ptm/m/n/10 , Overfull \hbox (46.8009pt too wide) in paragraph at lines 14391--14395 [][]\T1/zi4/m/it/10 smooth.construct.re.smooth.spec[][][]\T1/ptm/m/n/10 , [][]\ T1/zi4/m/it/10 smooth.construct.gp.smooth.spec[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4 /m/it/10 factor.smooth.interaction[][][] [3020] [3021] [3022] Underfull \hbox (badness 2326) in paragraph at lines 14596--14603 []\T1/ptm/m/n/10 These wrap-per func-tions ex-ist to al-low smooths spec-i-fied us-ing [][]\T1/zi4/m/it/10 smooth.construct[][][] \T1/ptm/m/n/10 and [3023] [3024] Underfull \hbox (badness 2158) in paragraph at lines 14681--14681 []\T1/ptm/m/it/10 Extract smooth-ing pa-ram-e-ter es-ti-ma-tor co-vari-ance ma- trix from [3025] [3026] [3027] [3028] [3029] [3030] [3031] [3032] [3033] [3034] [3035] [3036] [3037] [3038] [3039] [3040] [3041] [3042] [3043] [3044] [3045] [3046] [3047] [3048] [3049] [3050] [3051] Underfull \hbox (badness 1796) in paragraph at lines 16339--16342 []\T1/ptm/m/n/10 other op-tions to pass on to [][]\T1/zi4/m/it/10 persp[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 image[][][] \T1/ptm/m/n/10 or [][]\T1/zi4/m/ it/10 contour[][][]\T1/ptm/m/n/10 . In par-tic-u-lar [3052] [3053] [3054] [3055] [3056] [3057] [3058] [3059] [3060]) (./nlme-pkg.tex Chapter 25. [3061] [3062] [3063] [3064] [3065] [3066] [3067] [3068] [3069] [3070] [3071] [3072] [3073] [3074] [3075] [3076] [3077] [3078] [3079] [3080] [3081] [3082] [3083] [3084] [3085] [3086] [3087] [3088] [3089] [3090] Underfull \hbox (badness 2875) in paragraph at lines 1996--2002 []\T1/ptm/m/n/10 an op-tional log-i-cal value or one-sided for-mula, in-di-cat- ing a co-vari-ate Underfull \hbox (badness 1466) in paragraph at lines 1996--2002 \T1/ptm/m/n/10 that is in-ner to the \T1/zi4/m/it/10 displayLevel \T1/ptm/m/n/1 0 group-ing fac-tor. If equal to \T1/zi4/m/it/10 TRUE\T1/ptm/m/n/10 , [3091] [3092] [3093] [3094] Underfull \hbox (badness 10000) in paragraph at lines 2258--2264 [][][]\T1/zi4/m/it/10 ACF.lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corARMA [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][ ]\T1/zi4/m/it/10 Dim.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initi alize.corStruct[][][]\T1/ptm/m/n/10 , [3095] [3096] [3097] [3098] [3099] [3100] [3101] [3102] [3103] [3104] [3105] [3106] [3107] [3108] [3109pdfTeX warning (ext4): destination with the same iden tifier (name{Rfn.corMatrix.corCompSymm}) has been already used, duplicate ignor ed ...shipout:D \box_use:N \l_shipout_box l.3194 ] [3110] [3111] [3112] [3113] [3114] [3115] [3116] [3117] [3118] [3119] [3120] [3121] [3122] [3123] [3124] [3125] [3126] [3127] Underfull \hbox (badness 1067) in paragraph at lines 4419--4424 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3128] [3129] [3130] [3131] [3132] [3133] [3134] [3135] [3136] [3137] [3138] [3139] Underfull \hbox (badness 10000) in paragraph at lines 5165--5169 [][][]\T1/zi4/m/it/10 getCovariate.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/ m/it/10 getCovariate.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getCo variate.varFunc[][][]\T1/ptm/m/n/10 , [3140] [3141] [3142] [3143] [3144] [3145] [3146] Underfull \hbox (badness 10000) in paragraph at lines 5597--5600 [][][]\T1/zi4/m/it/10 getGroupsFormula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 getGroups.data.frame[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.gls[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGroups.lmList[][][]\T1/ptm/m/n/10 , [3147] [3148] [3149] [3150] [3151] [3152] [3153] Underfull \hbox (badness 10000) in paragraph at lines 5978--5983 [][][]\T1/zi4/m/it/10 getGroupsFormula.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 getGroupsFormula.lmList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 getGrou psFormula.lme[][][]\T1/ptm/m/n/10 , [3154] [3155] [3156] [3157] Underfull \hbox (badness 1490) in paragraph at lines 6248--6259 [][][]\T1/zi4/m/it/10 corClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsC ontrol[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsObject[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot. gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.gls[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 qqnorm.gls[][][]\T1/ptm/m/n/10 , [3158] Underfull \hbox (badness 10000) in paragraph at lines 6312--6314 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3159] [3160] [3161] [3162] [3163] [3164] Underfull \hbox (badness 10000) in paragraph at lines 6726--6728 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3165] [3166] [3167] [3168] Underfull \hbox (badness 10000) in paragraph at lines 6999--7006 [][][]\T1/zi4/m/it/10 formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gapply[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 gsummary[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nffGroupedData [][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.nfnGroupedData[][][]\T1/ptm/m/n /10 , [3169] [3170] [3171] [3172] Underfull \hbox (badness 10000) in paragraph at lines 7259--7264 [][][]\T1/zi4/m/it/10 Initialize.corStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/ it/10 Initialize.lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Initialize .glsStruct[][][]\T1/ptm/m/n/10 , [3173] [3174] [3175] [3176] [3177] [3178] [3179] [3180] [3181] [3182] [3183] [3184] [3185] [3186] [3187] [3188] [3189] [3190] [3191] Underfull \hbox (badness 10000) in paragraph at lines 8527--8529 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3192]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.sig ma}) has been already used, duplicate ignored \relax l.8578 \aliasA{sigma}{lmeObject}{sigma} [3193] [3194] [3195] [3196] Underfull \hbox (badness 10000) in paragraph at lines 8808--8815 [][][]\T1/zi4/m/it/10 lm[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 lme.lmList[] [][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 plot.lmList[][][]\T1/ptm/m/n/10 , [][] \T1/zi4/m/it/10 pooledSD[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 predict.lmLi st[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 residuals.lmList[][][]\T1/ptm/m/n/ 10 , [3197] [3198] [3199] [3200] [3201] [3202] [3203] [3204] Underfull \hbox (badness 10000) in paragraph at lines 9330--9337 [][][]\T1/zi4/m/it/10 lme[][][]\T1/ptm/m/n/10 ,[][]\T1/zi4/m/it/10 gls[][][]\T1 /ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.corStruct[][][]\T1/ptm/m/n/10 , [][]\T 1/zi4/m/it/10 logLik.glsStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik .lmeStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 logLik.lmList[][][]\T1/ptm /m/n/10 , [3205] [3206] [3207] [3208] [3209]pdfTeX warning (ext4): destination with the s ame identifier (name{Rfn.Matrix}) has been already used, duplicate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.Matrix.1}) has been already used, dupl icate ignored \relax l.9692 ...rA{Matrix}{Assign Matrix Values}{Matrix} [3210] [3211] [3212] [3213] [3214] [3215] [3216] [3217] [3218] [3219] [3220] [3221] Underfull \hbox (badness 1596) in paragraph at lines 10465--10491 []\T1/ptm/m/n/10 optionally, any of the fol-low-ing: (i) a two-sided for-mula o f the form [3222] [3223] Underfull \hbox (badness 1490) in paragraph at lines 10603--10609 [][][]\T1/zi4/m/it/10 nlmeControl[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm e.nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlmeObject[][][]\T1/ptm/m/n /10 , [][]\T1/zi4/m/it/10 nlsList[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 nlm eStruct[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 pdClasses[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 reStruct[][][]\T1/ptm/m/n/10 , [3224] [3225] [3226] [3227] Underfull \hbox (badness 10000) in paragraph at lines 10844--10846 []\T1/ptm/m/n/10 relative step for nu-mer-i-cal deriva-tives cal-cu-la-tions. D e-fault is [3228] [3229] [3230] [3231] [3232] [3233] [3234] [3235] [3236] [3237] [3238] [3239] [3240] [3241] [3242] [3243] [3244] [3245] [3246] [3247] [3248] [3249] [3250] [3251] [3252] [3253] [3254] [3255] [3256] [3257] [3258] [3259] [3260] [3261] [3262] [3263] [3264] [3265] [3266] [3267] [3268] [3269] Underfull \hbox (badness 1286) in paragraph at lines 13742--13749 []\T1/ptm/m/n/10 an op-tional log-i-cal func-tion or func-tion. If \T1/zi4/m/it /10 TRUE \T1/ptm/m/n/10 and ei-ther \T1/zi4/m/it/10 inner \T1/ptm/m/n/10 or [3270] [3271] [3272] [3273] [3274] [3275] [3276] [3277] Underfull \hbox (badness 1215) in paragraph at lines 14288--14290 []\T1/ptm/m/n/10 an op-tional nu-meric vec-tor with the lim-its for the y-axis. De-faults to [3278] [3279] [3280] [3281] [3282] [3283] [3284] [3285] [3286] [3287] [3288] [3289] [3290]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.random.effects}) has been already used, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.random.effects.1}) has been already us ed, duplicate ignored \relax l.15185 ...Extract Random Effects}{random.effects} [3291] [3292] [3293] [3294] [3295] [3296] [3297] [3298] [3299] [3300] Underfull \hbox (badness 3884) in paragraph at lines 15825--15829 []\T1/ptm/m/n/10 Charles F. Minto, Thomas W. Schnider and Steven L. Shafer (199 7). Phar-ma-coki- Underfull \hbox (badness 4846) in paragraph at lines 15825--15829 \T1/ptm/m/n/10 net-ics and Phar-ma-co-dy-nam-ics of Remifen-tanil: II. Model Ap -pli-ca-tion. \T1/ptm/m/it/10 Anes-the-si-ol- Underfull \hbox (badness 1953) in paragraph at lines 15825--15829 \T1/ptm/m/it/10 ogy \T1/ptm/b/n/10 86 \T1/ptm/m/n/10 1, 24--33. [][]$\T1/zi4/m/ it/10 https : / / pubs . asahq . org / anesthesiology / article / 86 / 1 / 24 / 35925 / [3301] [3302] Underfull \hbox (badness 1067) in paragraph at lines 15937--15942 \T1/ptm/m/n/10 ma-trix), \T1/zi4/m/it/10 fitted \T1/ptm/m/n/10 (fit-ted val-ues ), and \T1/zi4/m/it/10 residuals \T1/ptm/m/n/10 (resid-u-als). De-faults to [3303] [3304] [3305] [3306] Underfull \hbox (badness 1448) in paragraph at lines 16180--16189 \T1/ptm/m/n/10 Op-tions in-clude \T1/zi4/m/it/10 "response" \T1/ptm/m/n/10 for the "raw" resid-u-als (ob-served - fit-ted), [3307] [3308] [3309] [3310] [3311] [3312] [3313] [3314] [3315] [3316] Underfull \hbox (badness 1728) in paragraph at lines 16885--16888 []\T1/ptm/m/n/10 an op-tional log-i-cal value used to con-trol the amount of ou t-put in the [3317] [3318] [3319] [3320] [3321] Underfull \hbox (badness 8056) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Symmetry" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdCompSymm\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "Diagonal" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdDiag\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "Multiple of Underfull \hbox (badness 10000) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 an Identity" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdIdent\T1/ptm/ m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite,Natural Underfull \hbox (badness 5756) in paragraph at lines 17220--17229 \T1/zi4/m/it/10 Parametrization" \T1/ptm/m/n/10 for \T1/zi4/m/it/10 pdNatural\T 1/ptm/m/n/10 , \T1/zi4/m/it/10 "General Positive-Definite" \T1/ptm/m/n/10 for [3322] [3323] [3324] [3325] [3326] Underfull \hbox (badness 10000) in paragraph at lines 17542--17550 [][][]\T1/zi4/m/it/10 varComb[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varCons tPower[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varConstProp[][][]\T1/ptm/m/n/ 10 , [][]\T1/zi4/m/it/10 varExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varFi xed[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 varIdent[][][]\T1/ptm/m/n/10 , [] []\T1/zi4/m/it/10 varPower[][][]\T1/ptm/m/n/10 , [3327] [3328] [3329] [3330] [3331] [3332] [3333] [3334] [3335] [3336] Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/1 0 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corLin[ ][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corRatio[][][]\T1/ptm/m/n/1 0 , Underfull \hbox (badness 10000) in paragraph at lines 18252--18262 [][]\T1/zi4/m/it/10 Variogram.corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it /10 Variogram.corSpher[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.defa ult[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.gls[][][]\T1/ptm/m/n/10 , [3337] [3338] [3339] [3340] [3341] Underfull \hbox (badness 5036) in paragraph at lines 18576--18585 [][][]\T1/zi4/m/it/10 corSpatial[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Vari ogram[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 Variogram.default[][][]\T1/ptm/ m/n/10 , [][]\T1/zi4/m/it/10 Variogram.corExp[][][]\T1/ptm/m/n/10 , [][]\T1/zi4 /m/it/10 Variogram.corGaus[][][]\T1/ptm/m/n/10 , [3342] [3343] [3344] [3345] [3346] [3347] [3348] [3349] [3350] [3351] [3352] [3353] [3354]) (./nnet-pkg.tex Chapter 26. pdfTeX warning (ext4): destination with the same identifier (name{Rfn.multinom} ) has been already used, duplicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.multinom.1}) has been already used, du plicate ignored \relax l.47 ...t Multinomial Log-linear Models}{multinom} [3355] Underfull \hbox (badness 1117) in paragraph at lines 79--88 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for re-gres-sion mod-els, of the fo rm \T1/zi4/m/it/10 response ~ [3356] [3357] [3358] [3359] [3360] [3361] [3362]) (./rpart-pkg.tex Chapter 27. [3363] [3364] [3365] [3366] [3367] [3368] [3369] [3370] [3371] [3372] [3373] [3374] [3375] [3376] [3377] [3378] [3379] [3380] [3381] [3382] [3383] [3384] [3385] [3386] [3387] [3388] [3389] [3390] [3391]) (./spatial-pkg.tex [3392] Chapter 28. [3393] [3394] [3395] [3396] [3397] [3398] Underfull \hbox (badness 10000) in paragraph at lines 423--427 [3399] [3400] [3401] [3402] [3403] [3404] [3405] [3406] [3407] [3408] [3409] [3410] [3411]) (./survival-pkg.tex [3412] Chapter 29. [3413] [3414] [3415] [3416] Underfull \hbox (badness 6412) in paragraph at lines 282--284 []\T1/ptm/m/n/10 an op-tional list or vec-tor of group-ing el-e-ments, each as long as [3417] [3418]pdfTeX warning (ext4): destination with the same identifier (name{ Rfn.aml}) has been already used, duplicate ignored \relax l.382 ... Myelogenous Leukemia survival data}{aml} pdfTeX warning (ext4): destin ation with the same identifier (name{Rfn.aml.1}) has been already used, duplica te ignored \relax l.382 ... Myelogenous Leukemia survival data}{aml} [3419] [3420] [3421] [3422] Overfull \vbox (3.85637pt too high) has occurred while \output is active [3423] [3424] [3425] [3426] [3427] [3428] [3429] Underfull \hbox (badness 1097) in paragraph at lines 1106--1108 []\T1/ptm/m/n/10 F.J. Anscombe (1949). Trans-for-ma-tions of Pois-son, bi-no-mi al and negative-binomial data. [3430] [3431] [3432]pdfTeX warning (ext4): destination with the same identifier (name{Rfn.colon}) has been already used, duplicate ignored \relax l.1308 ...erapy for Stage B/C colon cancer}{colon} [3433] Underfull \hbox (badness 10000) in paragraph at lines 1356--1360 []\T1/ptm/m/n/10 Peter Hig-gins has pointed out a data in-con-sis-tency, re-vea led by [3434] [3435] [3436] [3437] [3438] [3439] [3440] [3441] Underfull \hbox (badness 10000) in paragraph at lines 1935--1950 []\T1/ptm/m/n/10 One user mis-take that has re-cently arisen is to slav-ishly f ol-low the ad-vice Underfull \hbox (badness 10000) in paragraph at lines 1935--1950 \T1/ptm/m/n/10 of some cod-ing guides and prepend \T1/zi4/m/it/10 survival:: \T 1/ptm/m/n/10 onto ev-er-thing, in-clud-ing the Underfull \hbox (badness 10000) in paragraph at lines 1935--1950 \T1/ptm/m/n/10 spe-cial terms, e.g., \T1/zi4/m/it/10 survival::coxph(survival:S urv(time,status) ~ age + Underfull \hbox (badness 2119) in paragraph at lines 1935--1950 \T1/zi4/m/it/10 survival::cluster(inst),data=lung) \T1/ptm/m/n/10 First, this i s un-nec-es-sary: ar-gu-ments within the [3442] [3443] [3444] [3445] [3446] [3447] [3448] [3449] [3450] [3451] [3452] [3453] [3454] [3455] [3456] [3457] Overfull \vbox (31.18587pt too high) has occurred while \output is active [3458] [3459] [3460] Underfull \hbox (badness 1389) in paragraph at lines 3295--3297 []\T1/ptm/m/n/10 Often used to add the ex-pected sur-vival curve(s) to a Kaplan -Meier plot gen-er-ated with [3461] [3462] [3463] [3464] Overfull \hbox (467.89665pt too wide) in alignment at lines 3581--3581 [] [] Underfull \vbox (badness 10000) has occurred while \output is active [3465] Overfull \vbox (8.56093pt too high) has occurred while \output is active [3466] [3467] [3468] [3469] [3470] [3471] [3472] [3473] [3474] [3475] [3476] Underfull \vbox (badness 1533) has occurred while \output is active [3477] [3478] [3479] [3480] [3481] [3482] [3483] [3484] [3485] [3486] [3487] [3488] [3489] [3490] Underfull \hbox (badness 5274) in paragraph at lines 5264--5266 []\T1/ptm/m/n/10 an ob-ject of class \T1/zi4/m/it/10 "summary.survfit"\T1/ptm/m /n/10 , which is the re-sult of the [3491] [3492] [3493] [3494] [3495] [3496] [3497] [3498] [3499] [3500] [3501] [3502] [3503] [3504] [3505] [3506] [3507] Underfull \hbox (badness 1281) in paragraph at lines 6488--6491 []\T1/ptm/m/n/10 type of resid-u-als, with choices of \T1/zi4/m/it/10 "response "\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "deviance"\T1/ptm/m/n/10 , \T1/zi4/m/it/10 "d fbeta"\T1/ptm/m/n/10 , [3508] [3509] [3510] [3511] [3512] [3513] [3514] [3515]pdfTeX warning (ext4): d estination with the same identifier (name{Rfn.solder}) has been already used, d uplicate ignored \relax l.7005 ...ata from a soldering experiment}{solder} [3516] Underfull \vbox (badness 1622) has occurred while \output is active [3517] [3518] [3519] [3520] [3521] [3522] [3523] [3524] [3525] [3526] [3527] [3528] [3529] [3530] [3531] [3532] [3533] Underfull \hbox (badness 10000) in paragraph at lines 8328--8337 []\T1/ptm/m/n/10 a for-mula ex-pres-sion as for other sur-vival mod-els, of the form [3534] [3535] Underfull \hbox (badness 1038) in paragraph at lines 8484--8490 \T1/ptm/m/n/10 op-tion does not cre-ate a curve, rather it re-trieves the pre-d icted sur-vival [3536] [3537] [3538] [3539] [3540] Underfull \hbox (badness 10000) in paragraph at lines 8847--8852 [][][]\T1/zi4/m/it/10 survfit.formula[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.coxph[][][]\T1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 survfit.object[][][]\T 1/ptm/m/n/10 , [][]\T1/zi4/m/it/10 print.survfit[][][]\T1/ptm/m/n/10 , [][]\T1/ zi4/m/it/10 plot.survfit[][][]\T1/ptm/m/n/10 , [3541] [3542] [3543] [3544] [3545] [3546] [3547] [3548] [3549] [3550] [3551] [3552] Underfull \hbox (badness 1354) in paragraph at lines 9751--9755 []\T1/ptm/m/n/10 survival times, for time de-pen-dent pre-dic-tion. 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too wide) in paragraph at lines 6540--6542 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3631] [3632] [3633] Overfull \hbox (0.8567pt too wide) in paragraph at lines 7199--7201 []\T1/zi4/m/it/10 cbind2,denseMatrix,sparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7201--7203 []\T1/zi4/m/it/10 cbind2,diagonalMatrix,sparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 7231--7233 []\T1/zi4/m/it/10 cbind2,sparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 7233--7235 []\T1/zi4/m/it/10 cbind2,sparseMatrix,diagonalMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7239--7241 []\T1/zi4/m/it/10 cbind2,sparseMatrix,sparseMatrix-method [3634] [3635] [3636] [3637] Overfull \hbox (10.8567pt too wide) in paragraph at lines 7985--7987 []\T1/zi4/m/it/10 coerce,atomicVector,dsparseVector-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 7987--7989 []\T1/zi4/m/it/10 coerce,atomicVector,sparseVector-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 7997--7999 []\T1/zi4/m/it/10 coerce,CHMfactor,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8001--8003 []\T1/zi4/m/it/10 coerce,CsparseMatrix,denseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8005--8007 []\T1/zi4/m/it/10 coerce,CsparseMatrix,lsparseMatrix-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8007--8009 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.coo-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8009--8011 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csc-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8011--8013 []\T1/zi4/m/it/10 coerce,CsparseMatrix,matrix.csr-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8015--8017 []\T1/zi4/m/it/10 coerce,CsparseMatrix,nsparseMatrix-method Overfull \hbox (10.8567pt too wide) 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coerce,diagonalMatrix,generalMatrix-method Overfull \hbox (20.8567pt too wide) in paragraph at lines 8125--8127 []\T1/zi4/m/it/10 coerce,diagonalMatrix,nsparseMatrix-method Overfull \hbox (15.8567pt too wide) in paragraph at lines 8127--8129 []\T1/zi4/m/it/10 coerce,diagonalMatrix,sparseVector-method Overfull \hbox (0.8567pt too wide) in paragraph at lines 8175--8177 []\T1/zi4/m/it/10 coerce,dsparseMatrix,matrix.csr-method [3639] [3640] Overfull \hbox (5.8567pt too wide) in paragraph at lines 8327--8329 []\T1/zi4/m/it/10 coerce,ldiMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8329--8331 []\T1/zi4/m/it/10 coerce,ldiMatrix,triangularMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 8361--8363 []\T1/zi4/m/it/10 coerce,lgeMatrix,triangularMatrix-method Overfull \hbox (5.8567pt too wide) in paragraph at lines 8375--8377 []\T1/zi4/m/it/10 coerce,lgTMatrix,symmetricMatrix-method Overfull \hbox (10.8567pt too wide) in paragraph at 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paragraph at lines 18917--18919 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.bs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 18924--18926 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.ds.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3693] Overfull \hbox (15.01662pt too wide) in paragraph at lines 18926--18928 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.fs.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 18928--18930 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.gp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (20.01662pt too wide) in paragraph at lines 18930--18932 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.mrf.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 18934--18936 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.re.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull 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smooth.construct.so.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , Overfull \hbox (15.01662pt too wide) in paragraph at lines 22043--22045 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.tp.smooth.spec\T1/ptm/m/it/10 )\T1/ptm/m/n/10 , [3709] [3710] Overfull \hbox (10.8567pt too wide) in paragraph at lines 22262--22264 []\T1/zi4/m/it/10 solve,MatrixFactorization,missing-method Overfull \hbox (10.8567pt too wide) in paragraph at lines 22264--22266 []\T1/zi4/m/it/10 solve,MatrixFactorization,numeric-method [3711] Overfull \hbox (20.01662pt too wide) in paragraph at lines 22425--22427 \T1/ptm/m/it/10 (\T1/zi4/m/it/10 smooth.construct.sos.smooth.spec\T1/ptm/m/it/1 0 )\T1/ptm/m/n/10 , [3712] Overfull \hbox (5.8567pt too wide) in paragraph at lines 22868--22870 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_depends [3713] Overfull \hbox (5.8567pt too wide) in paragraph at lines 22870--22872 []\T1/zi4/m/it/10 summarize_check_packages_in_dir_results Overfull \hbox (5.8567pt too wide) in 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'/home/iurt/rpmbuild/BUILD/R-4.0.5/src/unix' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/bin/exec make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/lib make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/main' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/modules make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/internet' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/lapack' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/lapack' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules/X11' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/modules' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library installing packages ... building HTML index ... make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/library' make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/info /usr/bin/install -p -m 644 "./dir" "/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/info" installing R info pages ... updating '/usr/share/info/dir' ... make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/doc/manual' + pushd src/nmath/standalone ~/rpmbuild/BUILD/R-4.0.5/src/nmath/standalone ~/rpmbuild/BUILD/R-4.0.5 + echo 'warning: %makeinstall is deprecated, try %make_install instead' warning: %makeinstall is deprecated, try %make_install instead + /usr/bin/make prefix=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr exec_prefix=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr bindir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/bin sbindir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/sbin sysconfdir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/etc datadir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share includedir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/include libdir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64 libexecdir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/libexec localstatedir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/var sharedstatedir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/var/lib mandir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/man infodir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/info install includedir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/include libdir=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64 mkdir -p -- /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/include make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/include' make[1]: 'Rmath.h' is up to date. make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/src/include' + popd ~/rpmbuild/BUILD/R-4.0.5 + mv doc/manual/R-FAQ.pdf doc/manual/R-admin.pdf doc/manual/R-data.pdf doc/manual/R-exts.pdf doc/manual/R-intro.pdf doc/manual/R-ints.pdf doc/manual/R-lang.pdf doc/manual/fullrefman.pdf /home/iurt/rpmbuild/BUILD/R-4.0.5 + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-admin.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/manual/R-admin.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-data.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/manual/R-data.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/refman.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/manual/refman.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-exts.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/manual/R-exts.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-FAQ.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/manual/R-FAQ.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-intro.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/manual/R-intro.pdf + for i in R-admin R-data refman R-exts R-FAQ R-intro R-lang + ln -s /usr/share/doc/R-base/R-lang.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/manual/R-lang.pdf + rm -rf '/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/*/latex/' + for i in /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64||g' /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/bin/R + for i in /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64||g' /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/bin/R + for i in /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64||g' /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/pkgconfig/libR.pc + for i in /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/bin/R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/pkgconfig/libR*.pc + sed -i 's|/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64||g' /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/pkgconfig/libRmath.pc + rm -f /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/html/function.html + rm -f /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/html/packages.html + rm -f /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/doc/html/search/index.txt + chmod 644 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch01.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch02.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch03.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch04.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch05.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch06.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch07.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch08.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch09.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch10.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch11.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch12.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch13.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch14.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch15.R /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/scripts/ch16.R + chmod 755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/share/sh/echo.sh + mkdir -p /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/applications + cat + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/16x16/apps + convert -scale 16x16 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/16x16/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/22x22/apps + convert -scale 22x22 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/22x22/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/24x24/apps + convert -scale 24x24 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/24x24/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/32x32/apps + convert -scale 32x32 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/32x32/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/48x48/apps + convert -scale 48x48 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/48x48/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/64x64/apps + convert -scale 64x64 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/64x64/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/96x96/apps + convert -scale 96x96 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/96x96/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/128x128/apps + convert -scale 128x128 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/128x128/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/192x192/apps + convert -scale 192x192 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/192x192/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/256x256/apps + convert -scale 256x256 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/256x256/apps/Rlogo.png + for S in 16 22 24 32 48 64 96 128 192 256 512 + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/512x512/apps + convert -scale 512x512 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.png /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/512x512/apps/Rlogo.png + /usr/bin/install -d -m755 /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/scalable/apps + /usr/bin/install -m644 /home/iurt/rpmbuild/SOURCES/Rlogo-4.0.5.svg /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/icons/hicolor/scalable/apps/Rlogo.svg + rm -f /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/info/dir '/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/info/dir.old*' + rm -rf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/share/perl/File + rm -rf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/share/perl/Text + mkdir -p /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/etc/bash_completion.d + cp /home/iurt/rpmbuild/SOURCES/R.bash_completion /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/etc/bash_completion.d/R-base + /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 4.0.5-1.mga9 --unique-debug-suffix -4.0.5-1.mga9.aarch64 --unique-debug-src-base R-base-4.0.5-1.mga9.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /home/iurt/rpmbuild/BUILD/R-4.0.5 extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/MASS/libs/MASS.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/bin/Rscript extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/bin/Rscript extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/KernSmooth/libs/KernSmooth.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/Matrix/libs/Matrix.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/lib/libR.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/bin/exec/R extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/class/libs/class.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/cluster/libs/cluster.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/foreign/libs/foreign.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/graphics/libs/graphics.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/grDevices/libs/cairo.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/grDevices/libs/grDevices.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/grid/libs/grid.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/lattice/libs/lattice.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/methods/libs/methods.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/mgcv/libs/mgcv.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/nlme/libs/nlme.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/nnet/libs/nnet.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/parallel/libs/parallel.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/rpart/libs/rpart.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/spatial/libs/spatial.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/splines/libs/splines.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/stats/libs/stats.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/survival/libs/survival.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/tcltk/libs/tcltk.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/tools/libs/tools.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/library/utils/libs/utils.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/modules/R_X11.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/modules/R_de.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/modules/internet.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/modules/lapack.so extracting debug info from /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/libRmath.so dwz: ./usr/bin/Rscript-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/bin/Rscript-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/bin/exec/R-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/lib/libR.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/KernSmooth/libs/KernSmooth.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/MASS/libs/MASS.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/Matrix/libs/Matrix.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/class/libs/class.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/cluster/libs/cluster.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/foreign/libs/foreign.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/grDevices/libs/cairo.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/grDevices/libs/grDevices.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/graphics/libs/graphics.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/grid/libs/grid.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/lattice/libs/lattice.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/methods/libs/methods.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/mgcv/libs/mgcv.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/nlme/libs/nlme.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/nnet/libs/nnet.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/parallel/libs/parallel.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/rpart/libs/rpart.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/spatial/libs/spatial.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/splines/libs/splines.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/stats/libs/stats.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/survival/libs/survival.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/tcltk/libs/tcltk.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/tools/libs/tools.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/library/utils/libs/utils.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/modules/R_X11.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/modules/R_de.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/modules/internet.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/R/modules/lapack.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: ./usr/lib64/libRmath.so-4.0.5-1.mga9.aarch64.debug: Unknown debugging section .debug_line_str dwz: Too few files for multifile optimization original debug info size: 20404kB, size after compression: 20404kB /usr/bin/sepdebugcrcfix: Updated 0 CRC32s, 33 CRC32s did match. 20002 blocks + /usr/lib/rpm/check-buildroot + '[' -n '' ']' + /usr/share/spec-helper/clean_files + '[' -n '' ']' + /usr/share/spec-helper/compress_files .xz + '[' -n '' ']' + /usr/share/spec-helper/relink_symlinks + '[' -n '' ']' + /usr/share/spec-helper/clean_perl + '[' -n '' ']' + /usr/share/spec-helper/lib_symlinks + '[' -n '' ']' + /usr/share/spec-helper/gprintify + '[' -n '' ']' + /usr/share/spec-helper/fix_mo + '[' -n '' ']' + /usr/share/spec-helper/fix_pamd + '[' -n '' ']' + /usr/share/spec-helper/remove_info_dir + '[' -n '' ']' + /usr/share/spec-helper/fix_eol + '[' -n '' ']' + /usr/share/spec-helper/check_desktop_files + '[' -n '' ']' + /usr/share/spec-helper/check_elf_files + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python3 1 0 + /usr/bin/true Executing(%check): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.TnJaGK + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd R-4.0.5 + '[' 1 -eq 1 ']' + TZ=UTC + LC_ALL=UTF-8 + make check make[1]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests/Examples' Testing examples for package ‘base’ Testing examples for package ‘tools’ comparing ‘tools-Ex.Rout’ to ‘tools-Ex.Rout.save’ ... OK Testing examples for package ‘utils’ Testing examples for package ‘grDevices’ comparing ‘grDevices-Ex.Rout’ to ‘grDevices-Ex.Rout.save’ ... OK Testing examples for package ‘graphics’ comparing ‘graphics-Ex.Rout’ to ‘graphics-Ex.Rout.save’ ... OK Testing examples for package ‘stats’ comparing ‘stats-Ex.Rout’ to ‘stats-Ex.Rout.save’ ... OK Testing examples for package ‘datasets’ comparing ‘datasets-Ex.Rout’ to ‘datasets-Ex.Rout.save’ ... OK Testing examples for package ‘methods’ Testing examples for package ‘grid’ comparing ‘grid-Ex.Rout’ to ‘grid-Ex.Rout.save’ ... OK Testing examples for package ‘splines’ comparing ‘splines-Ex.Rout’ to ‘splines-Ex.Rout.save’ ... OK Testing examples for package ‘stats4’ comparing ‘stats4-Ex.Rout’ to ‘stats4-Ex.Rout.save’ ... OK Testing examples for package ‘tcltk’ Testing examples for package ‘compiler’ Testing examples for package ‘parallel’ make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests/Examples' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running strict specific tests make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running code in 'eval-etc.R' ... OK comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK running code in 'simple-true.R' ... OK comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK running code in 'arith-true.R' ... OK comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK running code in 'arith.R' ... OK comparing 'arith.Rout' to './arith.Rout.save' ... OK running code in 'lm-tests.R' ... OK comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK running code in 'ok-errors.R' ... OK comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK running code in 'method-dispatch.R' ... OK comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK running code in 'any-all.R' ... OK comparing 'any-all.Rout' to './any-all.Rout.save' ... OK running code in 'd-p-q-r-tests.R' ... OK comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running sloppy specific tests make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running code in 'complex.R' ... OK comparing 'complex.Rout' to './complex.Rout.save' ... OK running code in 'eval-etc-2.R' ... OK comparing 'eval-etc-2.Rout' to './eval-etc-2.Rout.save' ... OK running code in 'print-tests.R' ... OK comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK running code in 'lapack.R' ... OK comparing 'lapack.Rout' to './lapack.Rout.save' ...245,249c245,249 < [1,] -0.4659 -0.04141 -0.8795 -8.440e-02 -0.02379 < [2,] -0.3931 0.15031 0.2249 -1.824e-05 -0.87881 < [3,] -0.3811 0.62205 0.2170 -5.570e-01 0.33239 < [4,] -0.5166 0.14296 0.1852 7.659e-01 0.30290 < [5,] -0.4652 -0.75386 0.3073 -3.097e-01 0.15780 --- > [1,] -0.4659 -0.04141 -0.8795 8.440e-02 0.02379 > [2,] -0.3931 0.15031 0.2249 1.824e-05 0.87881 > [3,] -0.3811 0.62205 0.2170 5.570e-01 -0.33239 > [4,] -0.5166 0.14296 0.1852 -7.659e-01 -0.30290 > [5,] -0.4652 -0.75386 0.3073 3.097e-01 -0.15780 253,257c253,257 < [1,] -0.4831 -0.3264 0.47567 0.1955 -0.6289 < [2,] -0.3627 0.3731 0.53450 -0.5920 0.3051 < [3,] -0.3995 0.4779 -0.59210 -0.2252 -0.4590 < [4,] -0.3983 -0.6985 -0.36298 -0.3821 0.2752 < [5,] -0.5628 0.1948 -0.07549 0.6439 0.4743 --- > [1,] -0.4831 -0.3264 0.47567 -0.1955 0.6289 > [2,] -0.3627 0.3731 0.53450 0.5920 -0.3051 > [3,] -0.3995 0.4779 -0.59210 0.2252 0.4590 > [4,] -0.3983 -0.6985 -0.36298 0.3821 -0.2752 > [5,] -0.5628 0.1948 -0.07549 -0.6439 -0.4743 265,269c265,269 < [1,] -0.4659 -0.04141 -0.8795 -8.440e-02 -0.02379 < [2,] -0.3931 0.15031 0.2249 -1.824e-05 -0.87881 < [3,] -0.3811 0.62205 0.2170 -5.570e-01 0.33239 < [4,] -0.5166 0.14296 0.1852 7.659e-01 0.30290 < [5,] -0.4652 -0.75386 0.3073 -3.097e-01 0.15780 --- > [1,] -0.4659 -0.04141 -0.8795 8.440e-02 0.02379 > [2,] -0.3931 0.15031 0.2249 1.824e-05 0.87881 > [3,] -0.3811 0.62205 0.2170 5.570e-01 -0.33239 > [4,] -0.5166 0.14296 0.1852 -7.659e-01 -0.30290 > [5,] -0.4652 -0.75386 0.3073 3.097e-01 -0.15780 276,277c276,277 < [4,] 0.1955 -0.5920 -0.2252 -0.3821 0.64390 < [5,] -0.6289 0.3051 -0.4590 0.2752 0.47430 --- > [4,] -0.1955 0.5920 0.2252 0.3821 -0.64390 > [5,] 0.6289 -0.3051 0.4590 -0.2752 -0.47430 OK running code in 'datasets.R' ... OK comparing 'datasets.Rout' to './datasets.Rout.save' ... OK running code in 'datetime.R' ... OK comparing 'datetime.Rout' to './datetime.Rout.save' ... OK running code in 'iec60559.R' ... OK comparing 'iec60559.Rout' to './iec60559.Rout.save' ... OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' checking Sys.timezone ... make[4]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running code in 'timezone.R' ... OK make[4]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running regression tests ... make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running code in 'array-subset.R' ... OK running code in 'reg-tests-1a.R' ... OK running code in 'reg-tests-1b.R' ... OK running code in 'reg-tests-1c.R' ... OK running code in 'reg-tests-1d.R' ... OK running code in 'reg-tests-2.R' ... OK comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK running code in 'reg-examples1.R' ... OK running code in 'reg-examples2.R' ... OK running code in 'reg-packages.R' ... OK running code in 'p-qbeta-strict-tst.R' ... OK running code in 'r-strict-tst.R' ... OK running code in 'reg-IO.R' ... OK comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK running code in 'reg-IO2.R' ... OK comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK running code in 'reg-plot.R' ... OK comparing 'reg-plot.pdf' to './reg-plot.pdf.save' ... OK running code in 'reg-S4-examples.R' ... OK running code in 'reg-BLAS.R' ... OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running code in 'reg-tests-3.R' ... OK comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK running code in 'reg-examples3.R' ... OK comparing 'reg-examples3.Rout' to './reg-examples3.Rout.save' ... OK running tests of plotting Latin-1 expect failure or some differences if not in a Latin-1 or UTF-8 locale running code in 'reg-plot-latin1.R' ... OK comparing 'reg-plot-latin1.pdf' to './reg-plot-latin1.pdf.save' ... OK running code in 'reg-S4.R' ... OK comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[2]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running tests of Internet functions make[3]: Entering directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' running code in 'internet.R' ... OK comparing 'internet.Rout' to './internet.Rout.save' ...8,10c8,247 < Warning message: < In nsl("cran.r-project.org") : < nsl() was unable to resolve host 'cran.r-project.org' --- > > > > # test do_download (and "record" #{packages}): > > ap <- available.packages(contrib.url("http://cran.r-project.org")) > > ## IGNORE_RDIFF_END > > > > # test url connections on http > > zz <- url("http://cran.r-project.org/") > > readLines(zz) > [1] "" > [2] "" > [3] "" > [4] "The Comprehensive R Archive Network" > [5] "" > [6] "" > [7] "" > [8] "" > [9] "" > [10] "" > [11] "" > [12] "" > [13] "" > [14] "" > [15] "" > [16] "" > [17] "" > [18] "<h1>The Comprehensive R Archive Network</h1>" > [19] "" > [20] "Your browser seems not to support frames," > [21] "here is the <A href=\"navbar.html\">contents page</A> of CRAN." > [22] "" > [23] "" > > close(zz) > > > > # and via read.table, test http and ftp. > > > > read.table("http://www.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > read.table("ftp://ftp.stats.ox.ac.uk/pub/datasets/csb/ch11b.dat") > V1 V2 V3 V4 V5 > 1 1 307 930 36.58 0 > 2 2 307 940 36.73 0 > 3 3 307 950 36.93 0 > 4 4 307 1000 37.15 0 > 5 5 307 1010 37.23 0 > 6 6 307 1020 37.24 0 > 7 7 307 1030 37.24 0 > 8 8 307 1040 36.90 0 > 9 9 307 1050 36.95 0 > 10 10 307 1100 36.89 0 > 11 11 307 1110 36.95 0 > 12 12 307 1120 37.00 0 > 13 13 307 1130 36.90 0 > 14 14 307 1140 36.99 0 > 15 15 307 1150 36.99 0 > 16 16 307 1200 37.01 0 > 17 17 307 1210 37.04 0 > 18 18 307 1220 37.04 0 > 19 19 307 1230 37.14 0 > 20 20 307 1240 37.07 0 > 21 21 307 1250 36.98 0 > 22 22 307 1300 37.01 0 > 23 23 307 1310 36.97 0 > 24 24 307 1320 36.97 0 > 25 25 307 1330 37.12 0 > 26 26 307 1340 37.13 0 > 27 27 307 1350 37.14 0 > 28 28 307 1400 37.15 0 > 29 29 307 1410 37.17 0 > 30 30 307 1420 37.12 0 > 31 31 307 1430 37.12 0 > 32 32 307 1440 37.17 0 > 33 33 307 1450 37.28 0 > 34 34 307 1500 37.28 0 > 35 35 307 1510 37.44 0 > 36 36 307 1520 37.51 0 > 37 37 307 1530 37.64 0 > 38 38 307 1540 37.51 0 > 39 39 307 1550 37.98 1 > 40 40 307 1600 38.02 1 > 41 41 307 1610 38.00 1 > 42 42 307 1620 38.24 1 > 43 43 307 1630 38.10 1 > 44 44 307 1640 38.24 1 > 45 45 307 1650 38.11 1 > 46 46 307 1700 38.02 1 > 47 47 307 1710 38.11 1 > 48 48 307 1720 38.01 1 > 49 49 307 1730 37.91 1 > 50 50 307 1740 37.96 1 > 51 51 307 1750 38.03 1 > 52 52 307 1800 38.17 1 > 53 53 307 1810 38.19 1 > 54 54 307 1820 38.18 1 > 55 55 307 1830 38.15 1 > 56 56 307 1840 38.04 1 > 57 57 307 1850 37.96 1 > 58 58 307 1900 37.84 1 > 59 59 307 1910 37.83 1 > 60 60 307 1920 37.84 1 > 61 61 307 1930 37.74 1 > 62 62 307 1940 37.76 1 > 63 63 307 1950 37.76 1 > 64 64 307 2000 37.64 1 > 65 65 307 2010 37.63 1 > 66 66 307 2020 38.06 1 > 67 67 307 2030 38.19 1 > 68 68 307 2040 38.35 1 > 69 69 307 2050 38.25 1 > 70 70 307 2100 37.86 1 > 71 71 307 2110 37.95 1 > 72 72 307 2120 37.95 1 > 73 73 307 2130 37.76 1 > 74 74 307 2140 37.60 1 > 75 75 307 2150 37.89 1 > 76 76 307 2200 37.86 1 > 77 77 307 2210 37.71 1 > 78 78 307 2220 37.78 1 > 79 79 307 2230 37.82 1 > 80 80 307 2240 37.76 1 > 81 81 307 2250 37.81 1 > 82 82 307 2300 37.84 1 > 83 83 307 2310 38.01 1 > 84 84 307 2320 38.10 1 > 85 85 307 2330 38.15 1 > 86 86 307 2340 37.92 1 > 87 87 307 2350 37.64 1 > 88 88 308 0 37.70 1 > 89 89 308 10 37.46 1 > 90 90 308 20 37.41 1 > 91 91 308 30 37.46 1 > 92 92 308 40 37.56 1 > 93 93 308 50 37.55 1 > 94 94 308 100 37.75 1 > 95 95 308 110 37.76 1 > 96 96 308 120 37.73 1 > 97 97 308 130 37.77 1 > 98 98 308 140 38.01 1 > 99 99 308 150 38.04 1 > 100 100 308 200 38.07 1 > > OK make[3]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[2]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' make[1]: Leaving directory '/home/iurt/rpmbuild/BUILD/R-4.0.5/tests' + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-base-4.0.5-1.mga9.aarch64 Executing(%doc): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.8zj8Nt + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd R-4.0.5 + DOCDIR=/home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + cp -pr README /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + cp -pr VERSION /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + cp -pr R-admin.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + cp -pr R-data.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + cp -pr R-exts.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + cp -pr R-FAQ.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + cp -pr R-intro.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + cp -pr R-lang.pdf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/share/doc/R-base + RPM_EC=0 ++ jobs -p + exit 0 warning: Duplicate build-ids /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/bin/Rscript and /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib64/R/bin/Rscript Provides: R = 4.0.5 R(ABI) = 4.0 R(base) = 4.0.5 R(class) = 4.0.5 R(methods) = 4.0.5 R(tools) = 4.0.5 R(utils) = 4.0.5 R-base = 4.0.5-1.mga9 R-base(aarch-64) = 4.0.5-1.mga9 R-core = 4.0.5 R-recommended = 4.0.5 application() application(mageia-R-base.desktop) libR.so()(64bit) pkgconfig(libR) = 4.0.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libX11.so.6()(64bit) libXmu.so.6()(64bit) libXt.so.6()(64bit) libblas.so.3()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.33)(64bit) libcairo.so.2()(64bit) libcurl.so.4()(64bit) libdl.so.2()(64bit) libdl.so.2(GLIBC_2.17)(64bit) libgobject-2.0.so.0()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libicui18n.so.68()(64bit) libicuuc.so.68()(64bit) libjpeg.so.8()(64bit) libjpeg.so.8(LIBJPEG_8.0)(64bit) liblapack.so.3()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpango-1.0.so.0()(64bit) libpangocairo-1.0.so.0()(64bit) libpcre2-8.so.0()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) libreadline.so.8()(64bit) libtcl8.6.so()(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) libtk8.6.so()(64bit) libz.so.1()(64bit) pkgconfig Processing files: lib64Rmath-4.0.5-1.mga9.aarch64 Provides: lib64Rmath = 4.0.5-1.mga9 lib64Rmath(aarch-64) = 4.0.5-1.mga9 libRmath.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.17)(64bit) Processing files: lib64Rmath-devel-4.0.5-1.mga9.aarch64 Provides: lib64Rmath-devel = 4.0.5-1.mga9 lib64Rmath-devel(aarch-64) = 4.0.5-1.mga9 libRmath-devel = 4.0.5-1.mga9 pkgconfig(libRmath) = 4.0.5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: pkgconfig Processing files: R-base-debugsource-4.0.5-1.mga9.aarch64 Provides: R-base-debugsource = 4.0.5-1.mga9 R-base-debugsource(aarch-64) = 4.0.5-1.mga9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-base-debuginfo-4.0.5-1.mga9.aarch64 warning: Duplicate build-ids /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib/debug/usr/bin/Rscript-4.0.5-1.mga9.aarch64.debug and /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64/usr/lib/debug/usr/lib64/R/bin/Rscript-4.0.5-1.mga9.aarch64.debug Provides: R-base-debuginfo = 4.0.5-1.mga9 R-base-debuginfo(aarch-64) = 4.0.5-1.mga9 debuginfo(build-id) = 05c85c897debb30ff1c3e94630642b841459e762 debuginfo(build-id) = 0c8ce07134bda265ecccc3e27979c98c6cb65d39 debuginfo(build-id) = 23f01e93e1749efa0a3da0e9011f2d0deab76d1c debuginfo(build-id) = 2c5d80370bfc75351dbe90186e98b2137cb4e89b debuginfo(build-id) = 2e598abb539da6d88583169a35f1d228925bc981 debuginfo(build-id) = 2f4308bde67862fdcb93e2233c1ff42f0dd66db4 debuginfo(build-id) = 3744bc44ad1ac0432d313c7d8d47bf3edaa11d0e debuginfo(build-id) = 3e6dd988cb5034fae9c1a3071ae6852660bd2661 debuginfo(build-id) = 5148605210b49b1f6701ac4b1a5d99be9cf486e9 debuginfo(build-id) = 5165ae6320b4efd198d70d015057ea6a32230bd1 debuginfo(build-id) = 5978745cb57246fb7659265d187ce79f8667fedc debuginfo(build-id) = 5dcd6e9482c10fbd804a16f5f3b9e8a6b82e094b debuginfo(build-id) = 71cc6069c5d75e99442dd3a59358bcdab2ffda0b debuginfo(build-id) = 71d8d9d3b586ffa63d50316515493aa048fe82cb debuginfo(build-id) = 74df1707876cfa42d7ff96f6857bb2237943cc3d debuginfo(build-id) = 7accf83d35ba6d20ec5afc0af97ab5a0119fe094 debuginfo(build-id) = 7cbadf08931f1cf3a2a3a27a39096440e6ed0805 debuginfo(build-id) = 85fead3060d4d10c1ba2bceda5c13fb1cb556297 debuginfo(build-id) = 90118df47aab6c061d72e94962b7b41fa9767f21 debuginfo(build-id) = 93dacc4e40c88875361f6b1764a004c4b92ceaf1 debuginfo(build-id) = 96394f1b63702250dd17f348dccb2fc51ba645bc debuginfo(build-id) = 9b731135f781757720c2dd8208a202175e033199 debuginfo(build-id) = b2400a8e6c4aceb94ec4126217fc7da819558520 debuginfo(build-id) = b6e1e19b863e2715a84340e038e732af4debbb49 debuginfo(build-id) = bfdc0087a95b38b836a8e1a0a36d11166e56657a debuginfo(build-id) = c502010354e98b751af0053ab80e21e985060306 debuginfo(build-id) = ceec714b2c64b6536b675a68f546743ba33b990e debuginfo(build-id) = cf0bcd6d52ba58041383bc46c5682c238321fa0e debuginfo(build-id) = da944b82b20a9a0821d0a2e94ac3b2277a645b42 debuginfo(build-id) = e44fbc98154d703cf5ac84aa56b593518d8b513b debuginfo(build-id) = f1aa0522096b175b0e2d62df70d16e9a61e9117f debuginfo(build-id) = nilnil Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-base-debugsource(aarch-64) = 4.0.5-1.mga9 Processing files: lib64Rmath-debuginfo-4.0.5-1.mga9.aarch64 Provides: debuginfo(build-id) = d67cd19a6c25dbcca8980a58df9c45c2c9e0b4d9 lib64Rmath-debuginfo = 4.0.5-1.mga9 lib64Rmath-debuginfo(aarch-64) = 4.0.5-1.mga9 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-base-debugsource(aarch-64) = 4.0.5-1.mga9 Checking for unpackaged file(s): /usr/lib/rpm/check-files /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64 Wrote: /home/iurt/rpmbuild/RPMS/aarch64/lib64Rmath-4.0.5-1.mga9.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/lib64Rmath-debuginfo-4.0.5-1.mga9.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/lib64Rmath-devel-4.0.5-1.mga9.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/R-base-debugsource-4.0.5-1.mga9.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/R-base-debuginfo-4.0.5-1.mga9.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/R-base-4.0.5-1.mga9.aarch64.rpm Executing(%clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.aUhjtD + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd R-4.0.5 + /usr/bin/rm -rf /home/iurt/rpmbuild/BUILDROOT/R-base-4.0.5-1.mga9.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(--clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.NWXM5V + umask 022 + cd /home/iurt/rpmbuild/BUILD + rm -rf R-4.0.5 + RPM_EC=0 ++ jobs -p + exit 0 D: [iurt_root_command] Success!