D: [iurt_root_command] chroot Installing /home/iurt/rpmbuild/SRPMS/rasmol-2.7.3-11.mga8.src.rpm Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.JPA8xn + umask 022 + cd /home/iurt/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + cd /home/iurt/rpmbuild/BUILD + rm -rf RasMol_2.7.3 + /usr/bin/gzip -dc /home/iurt/rpmbuild/SOURCES/RasMol_2.7.3.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd RasMol_2.7.3 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + rm -rf doc/RCS + find ./ -name .DS_Store -exec rm -f '{}' ';' + chmod 644 NOTICE PROJECTS ChangeLog.html INSTALL.html README.html TODO.html history.html README.shtml index.shtml ChangeLog.txt README.txt TODO.txt html_graphics/cifhome.jpg html_graphics/fontsample.jpg html_graphics/iucr.jpg html_graphics/iucrbkgd.jpg html_graphics/iucrhome.jpg html_graphics/noticeButton.jpg html_graphics/oldrasmollogo.jpg html_graphics/pattern,jpg html_graphics/pattern.jpg html_graphics/rasmol_hist_updated.jpg html_graphics/rasmol_hist_updated_small.jpg html_graphics/rasmol_history.jpg html_graphics/rasmolbutton.jpg html_graphics/rasmollogo.jpg html_graphics/rasmollogo_19Jun99.jpg html_graphics/rasmollogo_22Jun99.jpg html_graphics/rasmolwallpaper.jpg html_graphics/rasmolwallpaper_22Jun99.jpg html_graphics/rasmolwallpaper_22Mar99.jpg data/1crn.pdb data/1gpd.pdb.gz data/1ldb.pdb.gz data/1ldm.pdb.gz data/3cro.pdb data/4hir.ent.gz data/4ins.CIF data/7lyz.pdb data/IUCR9800028.cif data/RSML_fixup.csh data/asprin.alc data/pdb2mcg.ent doc/GPL doc/INSTALL.html doc/Makefile doc/NOTICE.html doc/RASLIC doc/RASWIN.GID doc/README doc/README.gz doc/README.html doc/README.html.gz doc/esrasmol27.html doc/esrasmol2721.html doc/index.html doc/itrasmol.hlp doc/itrasmol271.hlp doc/itrasmol2721.hlp doc/manualA4.pdf.gz doc/manualA4.ps.gz doc/manualA4.rtf.gz doc/manualUS.pdf.gz doc/manualUS.ps.gz doc/manualUS.rtf.gz doc/prepdoc doc/prepdoc.c doc/rasmol.0.gz doc/rasmol.1 doc/rasmol.1.gz doc/rasmol.doc doc/rasmol.doc.gz doc/rasmol.hlp doc/rasmol.hlp.gz doc/rasmol.html doc/rasmol.html.gz doc/rasmol.txt.gz doc/rasmol.vms.gz doc/raswin.hlp doc/raswin.hlp.gz doc/raswin.hpj.gz doc/raswin.rtf.gz doc/refcardA4.pdf.gz doc/refcardA4.ps.gz doc/refcardA4.rtf.gz doc/refcardUS.pdf.gz doc/refcardUS.ps.gz doc/refcardUS.rtf.gz + rm -f data/RSML_fixup.csh + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.p6fE5l + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd RasMol_2.7.3 + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + pushd src ~/rpmbuild/BUILD/RasMol_2.7.3/src ~/rpmbuild/BUILD/RasMol_2.7.3 + xmkmf -a imake -DUseInstalled -I/usr/share/X11/config make Makefiles make: Nothing to be done for 'Makefiles'. make includes make: Nothing to be done for 'includes'. make depend gccmakedep -- -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -- rasmol.c rasmol.h molecule.c molecule.h abstree.c abstree.h cmndline.c cmndline.h command.c command.h tokens.h transfor.c transfor.h render.c render.h x11win.c graphics.h pixutils.c pixutils.h font.h outfile.c outfile.h script.c script.h infile.c infile.h repres.c repres.h tokens.c cif_fract.c cif_fract.h cif.c cif.h cif_ctonum.c cif_ctonum.h cif_stx.c multiple.h multiple.c vector.h vector.c wbrotate.c wbrotate.c langsel.h langsel.c + /usr/bin/make -O -j8 V=1 VERBOSE=1 'EXTRA_LDOPTIONS= -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags' 'CCOPTIONS=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o rasmol.o rasmol.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from rasmol.c:97: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o cmndline.o cmndline.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from cmndline.c:59: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o abstree.o abstree.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from abstree.c:59: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o x11win.o x11win.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from x11win.c:100: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o repres.o repres.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from repres.c:92: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o render.o render.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from render.c:95: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o outfile.o outfile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from outfile.c:84: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o cif_fract.o cif_fract.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from cif_fract.c:175: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o molecule.o molecule.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from molecule.c:90: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o cif_ctonum.o cif_ctonum.c cif_ctonum.c:176: warning: "_USE_RASMOL_H_" redefined 176 | #define _USE_RASMOL_H_ | : note: this is the location of the previous definition In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from cif_ctonum.c:178: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o tokens.o tokens.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from tokens.c:86: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o multiple.o multiple.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from multiple.c:108: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o cif_stx.o cif_stx.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from cif_stx.c:204: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o vector.o vector.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from vector.c:92: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o langsel.o langsel.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/string.h:26, from langsel.c:91: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o wbrotate.o wbrotate.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from wbrotate.c:105: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o script.o script.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from script.c:86: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o cif.o cif.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from cif.c:255: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o transfor.o transfor.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from transfor.c:101: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o command.o command.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from command.c:69: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o infile.o infile.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from infile.c:84: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In function 'FetchRecord', inlined from 'LoadMDLMolecule' at infile.c:1048:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMDLMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMDLMolecule' at infile.c:1052:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMDLMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMDLMolecule' at infile.c:1051:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMDLMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMDLMolecule' at infile.c:1054:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMDLMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMDLMolecule' at infile.c:1063:9: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMDLMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMDLMolecule' at infile.c:1094:9: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMDLMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadXYZMolecule' at infile.c:1157:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadXYZMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadXYZMolecule' at infile.c:1161:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadXYZMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadXYZMolecule' at infile.c:1175:18: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadXYZMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMol2Molecule' at infile.c:1260:12: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMol2Molecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMol2Molecule' at infile.c:1306:17: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMol2Molecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMol2Molecule' at infile.c:1285:18: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMol2Molecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMol2Molecule' at infile.c:1266:13: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMol2Molecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMol2Molecule' at infile.c:1271:13: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMol2Molecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMol2Molecule' at infile.c:1277:13: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMol2Molecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMol2Molecule' at infile.c:1276:13: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMol2Molecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadAlchemyMolecule' at infile.c:1358:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadAlchemyMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadAlchemyMolecule' at infile.c:1368:9: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadAlchemyMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadAlchemyMolecule' at infile.c:1390:9: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadAlchemyMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadCharmmMolecule' at infile.c:1424:9: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadCharmmMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadCharmmMolecule' at infile.c:1436:9: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadCharmmMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMOPACMolecule' at infile.c:1660:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMOPACMolecule' at infile.c:1668:9: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMOPACMolecule' at infile.c:1670:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMOPACMolecule' at infile.c:1672:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMOPACMolecule' at infile.c:1677:12: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'ReadMOPACOutputFile' at infile.c:1542:12, inlined from 'LoadMOPACMolecule' at infile.c:1664:17: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'ReadMOPACOutputFile' at infile.c:1593:13, inlined from 'LoadMOPACMolecule' at infile.c:1664:17: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'ReadMOPACOutputFile' at infile.c:1592:13, inlined from 'LoadMOPACMolecule' at infile.c:1664:17: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'ReadMOPACOutputFile' at infile.c:1602:20, inlined from 'LoadMOPACMolecule' at infile.c:1664:17: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'ReadMOPACOutputFile' at infile.c:1549:17, inlined from 'LoadMOPACMolecule' at infile.c:1664:17: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'ReadMOPACOutputFile' at infile.c:1558:20, inlined from 'LoadMOPACMolecule' at infile.c:1664:17: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMOPACMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMacroModelMolecule' at infile.c:1773:5: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMacroModelMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadMacroModelMolecule' at infile.c:1783:10: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadMacroModelMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ In function 'FetchRecord', inlined from 'LoadPDBMolecule' at infile.c:871:12: infile.c:217:26: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 217 | buffer[MAXBUFFLEN] = 0; | ~~~~~~~~~~~~~~~~~~~^~~ infile.c: In function 'LoadPDBMolecule': infile.c:178:19: note: at offset 256 to object 'Record' with size 256 declared here 178 | static char __far Record[256]; | ^~~~~~ gcc -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -I/usr/include -Dlinux -D__aarch64__ -D_POSIX_C_SOURCE=199309L -D_POSIX_SOURCE -D_XOPEN_SOURCE -D_BSD_SOURCE -D_SVID_SOURCE -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFUNCPROTO=15 -DNARROWPROTO -DRASMOLDIR=\"/usr/lib64/rasmol/\" -DTHIRTYTWOBIT -D_USE_RASMOL_H_ -c -o pixutils.o pixutils.c In file included from /usr/include/bits/libc-header-start.h:33, from /usr/include/math.h:27, from rasmol.h:129, from pixutils.c:90: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ rm -f rasmol gcc -o rasmol -O2 -fno-strict-aliasing -O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-O1 -Wl,--build-id -Wl,--enable-new-dtags -L/usr/lib64 rasmol.o molecule.o abstree.o cmndline.o command.o transfor.o render.o repres.o x11win.o pixutils.o outfile.o script.o infile.o tokens.o cif_fract.o cif.o cif_ctonum.o cif_stx.o multiple.o vector.o wbrotate.o langsel.o -lm -lXi -lXext -lX11 rm -f rasmol._man if test -z "" ; then \ cd `dirname rasmol` && \ ln -s `basename rasmol.man` `basename rasmol._man`; \ else \ cpp -undef -traditional -D__apploaddir__=/usr/lib/X11/app-defaults -D__appmansuffix__=1x -D__filemansuffix__=5x -D__libmansuffix__=3x -D__miscmansuffix__=7 -D__drivermansuffix__=4 -D__adminmansuffix__=8 -D__projectroot__=/usr -D__xconfigfile__=xorg.conf -D__xconfigdir__=/usr/lib/X11 -D__xlogfile__=Xorg -D__xservername__=Xorg -D__xorgversion__="\"`echo 7 7 0 | sed -e 's/ /./g' -e 's/^/Version\\\ /'`\" \"X Version 11\"" -D__vendorversion__="`echo 7 7 0 | sed -e 's/ /./g' -e 's/^/Version\\\ /'` X.Org" \ < rasmol.man | sed -e '/^# *[0-9][0-9]* *.*$/d' -e '/^#line *[0-9][0-9]* *.*$/d' -e '/^[ ]*XCOMM$/s/XCOMM/#/' -e '/^[ ]*XCOMM[^a-zA-Z0-9_]/s/XCOMM/#/' -e '/^[ ]*XHASH/s/XHASH/#/' -e '/\@\@$/s/\@\@$/\\/' >rasmol._man; \ fi + popd ~/rpmbuild/BUILD/RasMol_2.7.3 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.pLyoWj + umask 022 + cd /home/iurt/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64 '!=' / ']' + rm -rf /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64 ++ dirname /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64 + mkdir -p /home/iurt/rpmbuild/BUILDROOT + mkdir /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64 + cd RasMol_2.7.3 + '[' 1 -eq 1 ']' + make -C src DESTDIR=/home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64 install make: Entering directory '/home/iurt/rpmbuild/BUILD/RasMol_2.7.3/src' + mkdir -p /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/bin install -c rasmol /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/bin/rasmol + mkdir -p /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/lib64/rasmol/ install -c -m 0444 ../doc/rasmol.hlp /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/lib64/rasmol/ install -c -m 0444 ../data/1crn.pdb /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/lib64/rasmol/ install -c -m 0444 ../data/3cro.pdb /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/lib64/rasmol/ install in . done make: Leaving directory '/home/iurt/rpmbuild/BUILD/RasMol_2.7.3/src' + make -C src DESTDIR=/home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64 install.man make: Entering directory '/home/iurt/rpmbuild/BUILD/RasMol_2.7.3/src' + mkdir -p /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/man/man1 install -c -m 0444 rasmol._man /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/man/man1/rasmol.1x install.man in . done make: Leaving directory '/home/iurt/rpmbuild/BUILD/RasMol_2.7.3/src' + cp -a data /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/lib64/rasmol + install -D -m 644 /home/iurt/rpmbuild/SOURCES/rasmol16.png /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/icons/mini/rasmol.png + install -D -m 644 /home/iurt/rpmbuild/SOURCES/rasmol32.png /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/icons/rasmol.png + install -D -m 644 /home/iurt/rpmbuild/SOURCES/rasmol48.png /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/icons/large/rasmol.png + mkdir -p /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/applications + cat + /usr/lib/rpm/find-debuginfo.sh -j8 --strict-build-id -m -i --build-id-seed 2.7.3-11.mga8 --unique-debug-suffix -2.7.3-11.mga8.aarch64 --unique-debug-src-base rasmol-2.7.3-11.mga8.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /home/iurt/rpmbuild/BUILD/RasMol_2.7.3 explicitly decompress any DWARF compressed ELF sections in /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/bin/rasmol extracting debug info from /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/bin/rasmol original debug info size: 1608kB, size after compression: 1520kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 3143 blocks + /usr/lib/rpm/check-buildroot + '[' -n '' ']' + /usr/share/spec-helper/clean_files + '[' -n '' ']' + /usr/share/spec-helper/compress_files .xz + '[' -n '' ']' + /usr/share/spec-helper/relink_symlinks + '[' -n '' ']' + /usr/share/spec-helper/clean_perl + '[' -n '' ']' + /usr/share/spec-helper/lib_symlinks + '[' -n '' ']' + /usr/share/spec-helper/gprintify + '[' -n '' ']' + /usr/share/spec-helper/fix_mo + '[' -n '' ']' + /usr/share/spec-helper/fix_pamd + '[' -n '' ']' + /usr/share/spec-helper/remove_info_dir + '[' -n '' ']' + /usr/share/spec-helper/fix_eol + '[' -n '' ']' + /usr/share/spec-helper/check_desktop_files + '[' -n '' ']' + /usr/share/spec-helper/check_elf_files + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python3 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/render.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/vector.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/langsel.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/molecule.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/molecule.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/cif_ctonum.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/script.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/multiple.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/cmndline.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/outfile.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/pixutils.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/wbrotate.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/cmndline.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/abstree.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/transfor.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/x11win.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/bitmaps.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/vector.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/langsel.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/cif.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/repres.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/cif_fract.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/infile.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/multiple.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/cif_ctonum.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/wbrotate.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/command.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/transfor.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/script.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/font.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/render.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/command.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/rasmol.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/infile.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/cif.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/cif_stx.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/repres.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/pixutils.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/outfile.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/cif_fract.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/abstree.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/tokens.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/graphics.h is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/tokens.c is executable but has no shebang, removing executable bit *** WARNING: ./usr/src/debug/rasmol-2.7.3-11.mga8.aarch64/src/rasmol.h is executable but has no shebang, removing executable bit Processing files: rasmol-2.7.3-11.mga8.aarch64 Executing(%doc): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.Zwhrcl + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd RasMol_2.7.3 + DOCDIR=/home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr NOTICE /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr PROJECTS /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr TODO.html TODO.txt /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr README.html README.shtml README.txt /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr RASLIC /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr ChangeLog.html ChangeLog.txt /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr history.html /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr index.shtml /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr html_graphics /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr doc/README.gz doc/README.html.gz doc/manualA4.pdf.gz doc/manualA4.ps.gz doc/manualA4.rtf.gz doc/manualUS.pdf.gz doc/manualUS.ps.gz doc/manualUS.rtf.gz doc/rasmol.0.gz doc/rasmol.1.gz doc/rasmol.doc.gz doc/rasmol.hlp.gz doc/rasmol.html.gz doc/rasmol.txt.gz doc/rasmol.vms.gz doc/raswin.hlp.gz doc/raswin.hpj.gz doc/raswin.rtf.gz doc/refcardA4.pdf.gz doc/refcardA4.ps.gz doc/refcardA4.rtf.gz doc/refcardUS.pdf.gz doc/refcardUS.ps.gz doc/refcardUS.rtf.gz /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr doc/INSTALL.html doc/NOTICE.html doc/README.html doc/esrasmol27.html doc/esrasmol2721.html doc/index.html doc/rasmol.html /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + cp -pr doc/itrasmol.hlp doc/itrasmol271.hlp doc/itrasmol2721.hlp doc/rasmol.hlp doc/raswin.hlp /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64/usr/share/doc/rasmol + RPM_EC=0 ++ jobs -p + exit 0 warning: File listed twice: /usr/share/doc/rasmol/README.html Provides: RasMol application() application(rasmol.desktop) rasmol = 2.7.3-11.mga8 rasmol(aarch-64) = 2.7.3-11.mga8 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libX11.so.6()(64bit) libXext.so.6()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) Processing files: rasmol-debugsource-2.7.3-11.mga8.aarch64 Provides: rasmol-debugsource = 2.7.3-11.mga8 rasmol-debugsource(aarch-64) = 2.7.3-11.mga8 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: rasmol-debuginfo-2.7.3-11.mga8.aarch64 Provides: debuginfo(build-id) = 3ad31e548fba985ae33f755c2298aaa9cb830880 rasmol-debuginfo = 2.7.3-11.mga8 rasmol-debuginfo(aarch-64) = 2.7.3-11.mga8 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: rasmol-debugsource(aarch-64) = 2.7.3-11.mga8 Checking for unpackaged file(s): /usr/lib/rpm/check-files /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64 Wrote: /home/iurt/rpmbuild/RPMS/aarch64/rasmol-debuginfo-2.7.3-11.mga8.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/rasmol-debugsource-2.7.3-11.mga8.aarch64.rpm Wrote: /home/iurt/rpmbuild/RPMS/aarch64/rasmol-2.7.3-11.mga8.aarch64.rpm Executing(%clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.DfKorn + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd RasMol_2.7.3 + /usr/bin/rm -rf /home/iurt/rpmbuild/BUILDROOT/rasmol-2.7.3-11.mga8.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(--clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.iIC3yn + umask 022 + cd /home/iurt/rpmbuild/BUILD + rm -rf RasMol_2.7.3 + RPM_EC=0 ++ jobs -p + exit 0 D: [iurt_root_command] Success!