D: [iurt_root_command] chroot Installing /home/iurt/rpmbuild/SRPMS/perl-BioPerl-1.7.7-2.mga8.src.rpm Building target platforms: aarch64 Building for target aarch64 Executing(%prep): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.Tnjwd6 + umask 022 + cd /home/iurt/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + cd /home/iurt/rpmbuild/BUILD + rm -rf BioPerl-1.7.7 + /usr/bin/gzip -dc /home/iurt/rpmbuild/SOURCES/BioPerl-1.7.7.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd BioPerl-1.7.7 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.RcMpn8 + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd BioPerl-1.7.7 + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + /usr/bin/perl Makefile.PL INSTALLDIRS=vendor Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for BioPerl Writing MYMETA.yml and MYMETA.json + /usr/bin/make -O -j8 V=1 VERBOSE=1 'OPTIMIZE=-O2 -g -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fasynchronous-unwind-tables' cp lib/Bio/AlignIO/bl2seq.pm blib/lib/Bio/AlignIO/bl2seq.pm cp lib/Bio/AlignIO/meme.pm blib/lib/Bio/AlignIO/meme.pm cp lib/Bio/AnalysisI.pm blib/lib/Bio/AnalysisI.pm cp lib/Bio/AlignIO/metafasta.pm blib/lib/Bio/AlignIO/metafasta.pm cp lib/Bio/AnalysisResultI.pm blib/lib/Bio/AnalysisResultI.pm cp lib/Bio/AlignIO/emboss.pm blib/lib/Bio/AlignIO/emboss.pm cp lib/Bio/AlignIO/xmfa.pm blib/lib/Bio/AlignIO/xmfa.pm cp lib/Bio/AlignIO/fasta.pm blib/lib/Bio/AlignIO/fasta.pm cp lib/Bio/AlignIO/msf.pm blib/lib/Bio/AlignIO/msf.pm cp lib/Bio/Annotation/Reference.pm blib/lib/Bio/Annotation/Reference.pm cp lib/Bio/Annotation/OntologyTerm.pm blib/lib/Bio/Annotation/OntologyTerm.pm cp lib/Bio/AnalysisParserI.pm blib/lib/Bio/AnalysisParserI.pm cp lib/Bio/AlignIO/arp.pm blib/lib/Bio/AlignIO/arp.pm cp lib/Bio/AlignIO/mase.pm blib/lib/Bio/AlignIO/mase.pm cp lib/Bio/Align/AlignI.pm blib/lib/Bio/Align/AlignI.pm cp lib/Bio/Annotation/DBLink.pm blib/lib/Bio/Annotation/DBLink.pm cp lib/Bio/Annotation/Comment.pm blib/lib/Bio/Annotation/Comment.pm cp lib/Bio/AlignIO/largemultifasta.pm blib/lib/Bio/AlignIO/largemultifasta.pm cp lib/Bio/AlignIO/selex.pm blib/lib/Bio/AlignIO/selex.pm cp lib/Bio/Align/StatisticsI.pm blib/lib/Bio/Align/StatisticsI.pm cp lib/Bio/Align/PairwiseStatistics.pm blib/lib/Bio/Align/PairwiseStatistics.pm cp lib/Bio/AlignIO/pfam.pm blib/lib/Bio/AlignIO/pfam.pm cp lib/Bio/Annotation/Collection.pm blib/lib/Bio/Annotation/Collection.pm cp lib/Bio/AlignIO.pm blib/lib/Bio/AlignIO.pm cp lib/Bio/AlignIO/clustalw.pm blib/lib/Bio/AlignIO/clustalw.pm cp lib/Bio/AlignIO/psi.pm blib/lib/Bio/AlignIO/psi.pm cp lib/Bio/Annotation/Relation.pm blib/lib/Bio/Annotation/Relation.pm cp lib/Bio/Align/DNAStatistics.pm blib/lib/Bio/Align/DNAStatistics.pm cp lib/Bio/AnnotatableI.pm blib/lib/Bio/AnnotatableI.pm cp lib/Bio/AlignIO/Handler/GenericAlignHandler.pm blib/lib/Bio/AlignIO/Handler/GenericAlignHandler.pm cp lib/Bio/AlignIO/nexus.pm blib/lib/Bio/AlignIO/nexus.pm cp lib/Bio/AlignIO/phylip.pm blib/lib/Bio/AlignIO/phylip.pm cp lib/Bio/Annotation/AnnotationFactory.pm blib/lib/Bio/Annotation/AnnotationFactory.pm cp lib/Bio/Align/Utilities.pm blib/lib/Bio/Align/Utilities.pm cp lib/Bio/AlignIO/po.pm blib/lib/Bio/AlignIO/po.pm cp lib/Bio/Align/ProteinStatistics.pm blib/lib/Bio/Align/ProteinStatistics.pm cp lib/Bio/AlignIO/proda.pm blib/lib/Bio/AlignIO/proda.pm cp lib/Bio/AlignIO/mega.pm blib/lib/Bio/AlignIO/mega.pm cp lib/Bio/AlignIO/maf.pm blib/lib/Bio/AlignIO/maf.pm cp lib/Bio/AlignIO/prodom.pm blib/lib/Bio/AlignIO/prodom.pm cp lib/Bio/DB/Taxonomy/list.pm blib/lib/Bio/DB/Taxonomy/list.pm cp lib/Bio/DB/Taxonomy/flatfile.pm blib/lib/Bio/DB/Taxonomy/flatfile.pm cp lib/Bio/DB/GFF/Util/Binning.pm blib/lib/Bio/DB/GFF/Util/Binning.pm cp lib/Bio/Annotation/TagTree.pm blib/lib/Bio/Annotation/TagTree.pm cp lib/Bio/DB/FileCache.pm blib/lib/Bio/DB/FileCache.pm cp lib/Bio/DB/Registry.pm blib/lib/Bio/DB/Registry.pm cp lib/Bio/DB/Fasta.pm blib/lib/Bio/DB/Fasta.pm cp lib/Bio/Annotation/Tree.pm blib/lib/Bio/Annotation/Tree.pm cp lib/Bio/DB/GenericWebAgent.pm blib/lib/Bio/DB/GenericWebAgent.pm cp lib/Bio/DB/Flat/BinarySearch.pm blib/lib/Bio/DB/Flat/BinarySearch.pm cp lib/Bio/Annotation/SimpleValue.pm blib/lib/Bio/Annotation/SimpleValue.pm cp lib/Bio/CodonUsage/IO.pm blib/lib/Bio/CodonUsage/IO.pm cp lib/Bio/Annotation/TypeManager.pm blib/lib/Bio/Annotation/TypeManager.pm cp lib/Bio/CodonUsage/Table.pm blib/lib/Bio/CodonUsage/Table.pm cp lib/Bio/DB/Flat/BDB/genbank.pm blib/lib/Bio/DB/Flat/BDB/genbank.pm cp lib/Bio/DB/UpdateableSeqI.pm blib/lib/Bio/DB/UpdateableSeqI.pm cp lib/Bio/DB/Flat/BDB.pm blib/lib/Bio/DB/Flat/BDB.pm cp lib/Bio/DB/ReferenceI.pm blib/lib/Bio/DB/ReferenceI.pm cp lib/Bio/DB/Taxonomy/silva.pm blib/lib/Bio/DB/Taxonomy/silva.pm cp lib/Bio/AnnotationI.pm blib/lib/Bio/AnnotationI.pm cp lib/Bio/AnnotationCollectionI.pm blib/lib/Bio/AnnotationCollectionI.pm cp lib/Bio/DB/SeqI.pm blib/lib/Bio/DB/SeqI.pm cp lib/Bio/DB/Query/WebQuery.pm blib/lib/Bio/DB/Query/WebQuery.pm cp lib/Bio/DB/GFF/Util/Rearrange.pm blib/lib/Bio/DB/GFF/Util/Rearrange.pm cp lib/Bio/DB/IndexedBase.pm blib/lib/Bio/DB/IndexedBase.pm cp lib/Bio/DB/Flat.pm blib/lib/Bio/DB/Flat.pm cp lib/Bio/DB/Failover.pm blib/lib/Bio/DB/Failover.pm cp lib/Bio/DB/Flat/BDB/embl.pm blib/lib/Bio/DB/Flat/BDB/embl.pm cp lib/Bio/DB/Flat/BDB/swiss.pm blib/lib/Bio/DB/Flat/BDB/swiss.pm cp lib/Bio/DB/LocationI.pm blib/lib/Bio/DB/LocationI.pm cp lib/Bio/DB/Flat/BDB/fasta.pm blib/lib/Bio/DB/Flat/BDB/fasta.pm cp lib/Bio/DB/Qual.pm blib/lib/Bio/DB/Qual.pm cp lib/Bio/DB/Taxonomy/greengenes.pm blib/lib/Bio/DB/Taxonomy/greengenes.pm cp lib/Bio/Annotation/Target.pm blib/lib/Bio/Annotation/Target.pm cp lib/Bio/DB/RandomAccessI.pm blib/lib/Bio/DB/RandomAccessI.pm cp lib/Bio/DB/Taxonomy.pm blib/lib/Bio/DB/Taxonomy.pm cp lib/Bio/DB/QueryI.pm blib/lib/Bio/DB/QueryI.pm cp lib/Bio/Annotation/StructuredValue.pm blib/lib/Bio/Annotation/StructuredValue.pm cp lib/Bio/DB/InMemoryCache.pm blib/lib/Bio/DB/InMemoryCache.pm cp lib/Bio/DB/DBFetch.pm blib/lib/Bio/DB/DBFetch.pm cp lib/Bio/Index/Abstract.pm blib/lib/Bio/Index/Abstract.pm cp lib/Bio/Factory/SeqAnalysisParserFactory.pm blib/lib/Bio/Factory/SeqAnalysisParserFactory.pm cp lib/Bio/Factory/AnalysisI.pm blib/lib/Bio/Factory/AnalysisI.pm cp lib/Bio/DBLinkContainerI.pm blib/lib/Bio/DBLinkContainerI.pm cp lib/Bio/Factory/DriverFactory.pm blib/lib/Bio/Factory/DriverFactory.pm cp lib/Bio/Factory/SequenceStreamI.pm blib/lib/Bio/Factory/SequenceStreamI.pm cp lib/Bio/DB/WebDBSeqI.pm blib/lib/Bio/DB/WebDBSeqI.pm cp lib/Bio/Das/SegmentI.pm blib/lib/Bio/Das/SegmentI.pm cp lib/Bio/Event/EventGeneratorI.pm blib/lib/Bio/Event/EventGeneratorI.pm cp lib/Bio/Index/Blast.pm blib/lib/Bio/Index/Blast.pm cp lib/Bio/Factory/ApplicationFactoryI.pm blib/lib/Bio/Factory/ApplicationFactoryI.pm cp lib/Bio/Factory/SequenceFactoryI.pm blib/lib/Bio/Factory/SequenceFactoryI.pm cp lib/Bio/Factory/SeqAnalysisParserFactoryI.pm blib/lib/Bio/Factory/SeqAnalysisParserFactoryI.pm cp lib/Bio/Index/GenBank.pm blib/lib/Bio/Index/GenBank.pm cp lib/Bio/Factory/FTLocationFactory.pm blib/lib/Bio/Factory/FTLocationFactory.pm cp lib/Bio/Event/EventHandlerI.pm blib/lib/Bio/Event/EventHandlerI.pm cp lib/Bio/Index/Fastq.pm blib/lib/Bio/Index/Fastq.pm cp lib/Bio/Das/FeatureTypeI.pm blib/lib/Bio/Das/FeatureTypeI.pm cp lib/Bio/Factory/ObjectFactoryI.pm blib/lib/Bio/Factory/ObjectFactoryI.pm cp lib/Bio/Factory/TreeFactoryI.pm blib/lib/Bio/Factory/TreeFactoryI.pm cp lib/Bio/DasI.pm blib/lib/Bio/DasI.pm cp lib/Bio/Factory/ObjectBuilderI.pm blib/lib/Bio/Factory/ObjectBuilderI.pm cp lib/Bio/Index/BlastTable.pm blib/lib/Bio/Index/BlastTable.pm cp lib/Bio/Index/Swissprot.pm blib/lib/Bio/Index/Swissprot.pm cp lib/Bio/Index/AbstractSeq.pm blib/lib/Bio/Index/AbstractSeq.pm cp lib/Bio/HandlerBaseI.pm blib/lib/Bio/HandlerBaseI.pm cp lib/Bio/LocatableSeq.pm blib/lib/Bio/LocatableSeq.pm cp lib/Bio/Factory/LocationFactoryI.pm blib/lib/Bio/Factory/LocationFactoryI.pm cp lib/Bio/FeatureHolderI.pm blib/lib/Bio/FeatureHolderI.pm cp lib/Bio/DescribableI.pm blib/lib/Bio/DescribableI.pm cp lib/Bio/IdCollectionI.pm blib/lib/Bio/IdCollectionI.pm cp lib/Bio/IdentifiableI.pm blib/lib/Bio/IdentifiableI.pm cp lib/Bio/Factory/ObjectFactory.pm blib/lib/Bio/Factory/ObjectFactory.pm cp lib/Bio/Index/SwissPfam.pm blib/lib/Bio/Index/SwissPfam.pm cp lib/Bio/Factory/SequenceProcessorI.pm blib/lib/Bio/Factory/SequenceProcessorI.pm cp lib/Bio/Index/EMBL.pm blib/lib/Bio/Index/EMBL.pm cp lib/Bio/Index/Qual.pm blib/lib/Bio/Index/Qual.pm cp lib/Bio/Index/Fasta.pm blib/lib/Bio/Index/Fasta.pm cp lib/Bio/Location/NarrowestCoordPolicy.pm blib/lib/Bio/Location/NarrowestCoordPolicy.pm cp lib/Bio/Location/Split.pm blib/lib/Bio/Location/Split.pm cp lib/Bio/Matrix/PSM/IO.pm blib/lib/Bio/Matrix/PSM/IO.pm cp lib/Bio/Matrix/Generic.pm blib/lib/Bio/Matrix/Generic.pm cp lib/Bio/Location/SplitLocationI.pm blib/lib/Bio/Location/SplitLocationI.pm cp lib/Bio/Matrix/PSM/IO/psiblast.pm blib/lib/Bio/Matrix/PSM/IO/psiblast.pm cp lib/Bio/Matrix/PSM/IO/masta.pm blib/lib/Bio/Matrix/PSM/IO/masta.pm cp lib/Bio/Location/AvWithinCoordPolicy.pm blib/lib/Bio/Location/AvWithinCoordPolicy.pm cp lib/Bio/Location/FuzzyLocationI.pm blib/lib/Bio/Location/FuzzyLocationI.pm cp lib/Bio/Matrix/PSM/PsmHeader.pm blib/lib/Bio/Matrix/PSM/PsmHeader.pm cp lib/Bio/Matrix/PSM/Psm.pm blib/lib/Bio/Matrix/PSM/Psm.pm cp lib/Bio/Matrix/IO/scoring.pm blib/lib/Bio/Matrix/IO/scoring.pm cp lib/Bio/Matrix/PSM/IO/transfac.pm blib/lib/Bio/Matrix/PSM/IO/transfac.pm cp lib/Bio/Matrix/PSM/PsmHeaderI.pm blib/lib/Bio/Matrix/PSM/PsmHeaderI.pm cp lib/Bio/Matrix/Mlagan.pm blib/lib/Bio/Matrix/Mlagan.pm cp lib/Bio/Matrix/IO/mlagan.pm blib/lib/Bio/Matrix/IO/mlagan.pm cp lib/Bio/Matrix/PSM/InstanceSite.pm blib/lib/Bio/Matrix/PSM/InstanceSite.pm cp lib/Bio/Matrix/PSM/SiteMatrixI.pm blib/lib/Bio/Matrix/PSM/SiteMatrixI.pm cp lib/Bio/Matrix/PSM/PsmI.pm blib/lib/Bio/Matrix/PSM/PsmI.pm cp lib/Bio/Location/Simple.pm blib/lib/Bio/Location/Simple.pm cp lib/Bio/Matrix/PSM/ProtMatrix.pm blib/lib/Bio/Matrix/PSM/ProtMatrix.pm cp lib/Bio/Matrix/PhylipDist.pm blib/lib/Bio/Matrix/PhylipDist.pm cp lib/Bio/Matrix/PSM/IO/mast.pm blib/lib/Bio/Matrix/PSM/IO/mast.pm cp lib/Bio/Location/WidestCoordPolicy.pm blib/lib/Bio/Location/WidestCoordPolicy.pm cp lib/Bio/Matrix/PSM/IO/meme.pm blib/lib/Bio/Matrix/PSM/IO/meme.pm cp lib/Bio/Ontology/DocumentRegistry.pm blib/lib/Bio/Ontology/DocumentRegistry.pm cp lib/Bio/Location/Fuzzy.pm blib/lib/Bio/Location/Fuzzy.pm cp lib/Bio/Matrix/MatrixI.pm blib/lib/Bio/Matrix/MatrixI.pm cp lib/Bio/Location/Atomic.pm blib/lib/Bio/Location/Atomic.pm cp lib/Bio/LocationI.pm blib/lib/Bio/LocationI.pm cp lib/Bio/Matrix/IO.pm blib/lib/Bio/Matrix/IO.pm cp lib/Bio/Location/CoordinatePolicyI.pm blib/lib/Bio/Location/CoordinatePolicyI.pm cp lib/Bio/Matrix/PSM/ProtPsm.pm blib/lib/Bio/Matrix/PSM/ProtPsm.pm cp lib/Bio/Matrix/IO/phylip.pm blib/lib/Bio/Matrix/IO/phylip.pm cp lib/Bio/Matrix/Scoring.pm blib/lib/Bio/Matrix/Scoring.pm cp lib/Bio/Matrix/PSM/InstanceSiteI.pm blib/lib/Bio/Matrix/PSM/InstanceSiteI.pm cp lib/Bio/Matrix/PSM/SiteMatrix.pm blib/lib/Bio/Matrix/PSM/SiteMatrix.pm cp lib/Bio/Ontology/TermFactory.pm blib/lib/Bio/Ontology/TermFactory.pm cp lib/Bio/ParameterBaseI.pm blib/lib/Bio/ParameterBaseI.pm cp lib/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm blib/lib/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm cp lib/Bio/Ontology/RelationshipFactory.pm blib/lib/Bio/Ontology/RelationshipFactory.pm cp lib/Bio/Ontology/Path.pm blib/lib/Bio/Ontology/Path.pm cp lib/Bio/OntologyIO/obo.pm blib/lib/Bio/OntologyIO/obo.pm cp lib/Bio/Ontology/OntologyI.pm blib/lib/Bio/Ontology/OntologyI.pm cp lib/Bio/OntologyIO/soflat.pm blib/lib/Bio/OntologyIO/soflat.pm cp lib/Bio/Ontology/OntologyEngineI.pm blib/lib/Bio/Ontology/OntologyEngineI.pm cp lib/Bio/Ontology/Ontology.pm blib/lib/Bio/Ontology/Ontology.pm cp lib/Bio/Ontology/OBOterm.pm blib/lib/Bio/Ontology/OBOterm.pm cp lib/Bio/Ontology/SimpleOntologyEngine.pm blib/lib/Bio/Ontology/SimpleOntologyEngine.pm cp lib/Bio/OntologyIO/simplehierarchy.pm blib/lib/Bio/OntologyIO/simplehierarchy.pm cp lib/Bio/Root/Exception.pm blib/lib/Bio/Root/Exception.pm cp lib/Bio/Ontology/OntologyStore.pm blib/lib/Bio/Ontology/OntologyStore.pm cp lib/Bio/Ontology/Relationship.pm blib/lib/Bio/Ontology/Relationship.pm cp lib/Bio/PrimarySeqI.pm blib/lib/Bio/PrimarySeqI.pm cp lib/Bio/OntologyIO.pm blib/lib/Bio/OntologyIO.pm cp lib/Bio/Ontology/GOterm.pm blib/lib/Bio/Ontology/GOterm.pm cp lib/Bio/OntologyIO/Handlers/BaseSAXHandler.pm blib/lib/Bio/OntologyIO/Handlers/BaseSAXHandler.pm cp lib/Bio/Ontology/RelationshipType.pm blib/lib/Bio/Ontology/RelationshipType.pm cp lib/Bio/OntologyIO/Handlers/InterProHandler.pm blib/lib/Bio/OntologyIO/Handlers/InterProHandler.pm cp lib/Bio/Range.pm blib/lib/Bio/Range.pm cp lib/Bio/OntologyIO/InterProParser.pm blib/lib/Bio/OntologyIO/InterProParser.pm cp lib/Bio/PullParserI.pm blib/lib/Bio/PullParserI.pm cp lib/Bio/OntologyIO/dagflat.pm blib/lib/Bio/OntologyIO/dagflat.pm cp lib/Bio/RangeI.pm blib/lib/Bio/RangeI.pm cp lib/Bio/PrimarySeq.pm blib/lib/Bio/PrimarySeq.pm cp lib/Bio/Ontology/TermI.pm blib/lib/Bio/Ontology/TermI.pm cp lib/Bio/Ontology/PathI.pm blib/lib/Bio/Ontology/PathI.pm cp lib/Bio/OntologyIO/goflat.pm blib/lib/Bio/OntologyIO/goflat.pm cp lib/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm blib/lib/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm cp lib/Bio/Ontology/InterProTerm.pm blib/lib/Bio/Ontology/InterProTerm.pm cp lib/Bio/Ontology/RelationshipI.pm blib/lib/Bio/Ontology/RelationshipI.pm cp lib/Bio/Ontology/OBOEngine.pm blib/lib/Bio/Ontology/OBOEngine.pm cp lib/Bio/Ontology/Term.pm blib/lib/Bio/Ontology/Term.pm cp lib/Bio/Search/Hit/Fasta.pm blib/lib/Bio/Search/Hit/Fasta.pm cp lib/Bio/Search/Hit/HitI.pm blib/lib/Bio/Search/Hit/HitI.pm cp lib/Bio/Search/HSP/ModelHSP.pm blib/lib/Bio/Search/HSP/ModelHSP.pm cp lib/Bio/Search/DatabaseI.pm blib/lib/Bio/Search/DatabaseI.pm cp lib/Bio/Root/RootI.pm blib/lib/Bio/Root/RootI.pm cp lib/Bio/Search/HSP/PSLHSP.pm blib/lib/Bio/Search/HSP/PSLHSP.pm cp lib/Bio/Root/Storable.pm blib/lib/Bio/Root/Storable.pm cp lib/Bio/Search/Iteration/GenericIteration.pm blib/lib/Bio/Search/Iteration/GenericIteration.pm cp lib/Bio/Search/HSP/WABAHSP.pm blib/lib/Bio/Search/HSP/WABAHSP.pm cp lib/Bio/Root/Root.pm blib/lib/Bio/Root/Root.pm cp lib/Bio/Search/HSP/HSPI.pm blib/lib/Bio/Search/HSP/HSPI.pm cp lib/Bio/Search/HSP/BlastPullHSP.pm blib/lib/Bio/Search/HSP/BlastPullHSP.pm cp lib/Bio/Search/Processor.pm blib/lib/Bio/Search/Processor.pm cp lib/Bio/Search/Hit/GenericHit.pm blib/lib/Bio/Search/Hit/GenericHit.pm cp lib/Bio/Search/GenericDatabase.pm blib/lib/Bio/Search/GenericDatabase.pm cp lib/Bio/Root/Test.pm blib/lib/Bio/Root/Test.pm cp lib/Bio/Root/HTTPget.pm blib/lib/Bio/Root/HTTPget.pm cp lib/Bio/Search/Iteration/IterationI.pm blib/lib/Bio/Search/Iteration/IterationI.pm cp lib/Bio/Search/HSP/HSPFactory.pm blib/lib/Bio/Search/HSP/HSPFactory.pm cp lib/Bio/Root/Version.pm blib/lib/Bio/Root/Version.pm cp lib/Bio/Search/Hit/ModelHit.pm blib/lib/Bio/Search/Hit/ModelHit.pm cp lib/Bio/Search/HSP/BlastHSP.pm blib/lib/Bio/Search/HSP/BlastHSP.pm cp lib/Bio/Root/TestObject.pm blib/lib/Bio/Root/TestObject.pm cp lib/Bio/Search/Hit/BlastHit.pm blib/lib/Bio/Search/Hit/BlastHit.pm cp lib/Bio/Search/HSP/PsiBlastHSP.pm blib/lib/Bio/Search/HSP/PsiBlastHSP.pm cp lib/Bio/Search/GenericStatistics.pm blib/lib/Bio/Search/GenericStatistics.pm cp lib/Bio/Search/BlastStatistics.pm blib/lib/Bio/Search/BlastStatistics.pm cp lib/Bio/Search/HSP/PullHSPI.pm blib/lib/Bio/Search/HSP/PullHSPI.pm cp lib/Bio/Search/BlastUtils.pm blib/lib/Bio/Search/BlastUtils.pm cp lib/Bio/Search/HSP/FastaHSP.pm blib/lib/Bio/Search/HSP/FastaHSP.pm cp lib/Bio/Root/Utilities.pm blib/lib/Bio/Root/Utilities.pm cp lib/Bio/Search/Hit/PullHitI.pm blib/lib/Bio/Search/Hit/PullHitI.pm cp lib/Bio/Search/HSP/GenericHSP.pm blib/lib/Bio/Search/HSP/GenericHSP.pm cp lib/Bio/Search/Hit/BlastPullHit.pm blib/lib/Bio/Search/Hit/BlastPullHit.pm cp lib/Bio/Search/Hit/PsiBlastHit.pm blib/lib/Bio/Search/Hit/PsiBlastHit.pm cp lib/Bio/Search/Hit/HitFactory.pm blib/lib/Bio/Search/Hit/HitFactory.pm cp lib/Bio/Root/IO.pm blib/lib/Bio/Root/IO.pm cp lib/Bio/SearchIO/EventHandlerI.pm blib/lib/Bio/SearchIO/EventHandlerI.pm cp lib/Bio/SearchIO/FastHitEventBuilder.pm blib/lib/Bio/SearchIO/FastHitEventBuilder.pm cp lib/Bio/SearchIO/Writer/TextResultWriter.pm blib/lib/Bio/SearchIO/Writer/TextResultWriter.pm cp lib/Bio/Search/Result/ResultI.pm blib/lib/Bio/Search/Result/ResultI.pm cp lib/Bio/SearchIO/blast.pm blib/lib/Bio/SearchIO/blast.pm cp lib/Bio/SearchIO.pm blib/lib/Bio/SearchIO.pm cp lib/Bio/SearchIO/IteratedSearchResultEventBuilder.pm blib/lib/Bio/SearchIO/IteratedSearchResultEventBuilder.pm cp lib/Bio/Search/Tiling/MapTiling.pm blib/lib/Bio/Search/Tiling/MapTiling.pm cp lib/Bio/SearchIO/cross_match.pm blib/lib/Bio/SearchIO/cross_match.pm cp lib/Bio/Search/Result/CrossMatchResult.pm blib/lib/Bio/Search/Result/CrossMatchResult.pm cp lib/Bio/SearchIO/blast_pull.pm blib/lib/Bio/SearchIO/blast_pull.pm cp lib/Bio/Search/Result/ResultFactory.pm blib/lib/Bio/Search/Result/ResultFactory.pm cp lib/Bio/Search/SearchUtils.pm blib/lib/Bio/Search/SearchUtils.pm cp lib/Bio/Search/Result/WABAResult.pm blib/lib/Bio/Search/Result/WABAResult.pm cp lib/Bio/SearchIO/Writer/HitTableWriter.pm blib/lib/Bio/SearchIO/Writer/HitTableWriter.pm cp lib/Bio/SearchIO/SearchWriterI.pm blib/lib/Bio/SearchIO/SearchWriterI.pm cp lib/Bio/Search/Tiling/MapTileUtils.pm blib/lib/Bio/Search/Tiling/MapTileUtils.pm cp lib/Bio/SearchIO/erpin.pm blib/lib/Bio/SearchIO/erpin.pm cp lib/Bio/Search/Tiling/TilingI.pm blib/lib/Bio/Search/Tiling/TilingI.pm cp lib/Bio/SearchIO/SearchResultEventBuilder.pm blib/lib/Bio/SearchIO/SearchResultEventBuilder.pm cp lib/Bio/SearchIO/Writer/HTMLResultWriter.pm blib/lib/Bio/SearchIO/Writer/HTMLResultWriter.pm cp lib/Bio/SearchIO/Writer/HSPTableWriter.pm blib/lib/Bio/SearchIO/Writer/HSPTableWriter.pm cp lib/Bio/Search/Result/BlastResult.pm blib/lib/Bio/Search/Result/BlastResult.pm cp lib/Bio/Search/Result/INFERNALResult.pm blib/lib/Bio/Search/Result/INFERNALResult.pm cp lib/Bio/Search/Result/BlastPullResult.pm blib/lib/Bio/Search/Result/BlastPullResult.pm cp lib/Bio/Search/StatisticsI.pm blib/lib/Bio/Search/StatisticsI.pm cp lib/Bio/SearchIO/Writer/GbrowseGFF.pm blib/lib/Bio/SearchIO/Writer/GbrowseGFF.pm cp lib/Bio/Search/Result/GenericResult.pm blib/lib/Bio/Search/Result/GenericResult.pm cp lib/Bio/SearchIO/blasttable.pm blib/lib/Bio/SearchIO/blasttable.pm cp lib/Bio/SearchIO/axt.pm blib/lib/Bio/SearchIO/axt.pm cp lib/Bio/Search/Result/PullResultI.pm blib/lib/Bio/Search/Result/PullResultI.pm cp lib/Bio/SearchIO/Writer/ResultTableWriter.pm blib/lib/Bio/SearchIO/Writer/ResultTableWriter.pm cp lib/Bio/SeqAnalysisParserI.pm blib/lib/Bio/SeqAnalysisParserI.pm cp lib/Bio/Seq/SeqFastaSpeedFactory.pm blib/lib/Bio/Seq/SeqFastaSpeedFactory.pm cp lib/Bio/Seq/LargeLocatableSeq.pm blib/lib/Bio/Seq/LargeLocatableSeq.pm cp lib/Bio/Seq/LargeSeq.pm blib/lib/Bio/Seq/LargeSeq.pm cp lib/Bio/SearchIO/gmap_f9.pm blib/lib/Bio/SearchIO/gmap_f9.pm cp lib/Bio/Seq/SequenceTrace.pm blib/lib/Bio/Seq/SequenceTrace.pm cp lib/Bio/Seq/SimulatedRead.pm blib/lib/Bio/Seq/SimulatedRead.pm cp lib/Bio/Seq/EncodedSeq.pm blib/lib/Bio/Seq/EncodedSeq.pm cp lib/Bio/Seq/SeqFactory.pm blib/lib/Bio/Seq/SeqFactory.pm cp lib/Bio/SearchIO/rnamotif.pm blib/lib/Bio/SearchIO/rnamotif.pm cp lib/Bio/SeqFeature/Computation.pm blib/lib/Bio/SeqFeature/Computation.pm cp lib/Bio/Seq/Meta.pm blib/lib/Bio/Seq/Meta.pm cp lib/Bio/SeqFeature/Gene/Exon.pm blib/lib/Bio/SeqFeature/Gene/Exon.pm cp lib/Bio/SearchIO/psl.pm blib/lib/Bio/SearchIO/psl.pm cp lib/Bio/Seq/Quality.pm blib/lib/Bio/Seq/Quality.pm cp lib/Bio/SearchIO/sim4.pm blib/lib/Bio/SearchIO/sim4.pm cp lib/Bio/Seq/BaseSeqProcessor.pm blib/lib/Bio/Seq/BaseSeqProcessor.pm cp lib/Bio/SearchIO/fasta.pm blib/lib/Bio/SearchIO/fasta.pm cp lib/Bio/Seq.pm blib/lib/Bio/Seq.pm cp lib/Bio/SeqFeature/FeaturePair.pm blib/lib/Bio/SeqFeature/FeaturePair.pm cp lib/Bio/SearchIO/exonerate.pm blib/lib/Bio/SearchIO/exonerate.pm cp lib/Bio/Seq/RichSeq.pm blib/lib/Bio/Seq/RichSeq.pm cp lib/Bio/SeqFeature/CollectionI.pm blib/lib/Bio/SeqFeature/CollectionI.pm cp lib/Bio/Seq/PrimaryQual.pm blib/lib/Bio/Seq/PrimaryQual.pm cp lib/Bio/Seq/SeqBuilder.pm blib/lib/Bio/Seq/SeqBuilder.pm cp lib/Bio/SeqFeature/Amplicon.pm blib/lib/Bio/SeqFeature/Amplicon.pm cp lib/Bio/SearchIO/wise.pm blib/lib/Bio/SearchIO/wise.pm cp lib/Bio/SearchIO/waba.pm blib/lib/Bio/SearchIO/waba.pm cp lib/Bio/SeqFeature/Collection.pm blib/lib/Bio/SeqFeature/Collection.pm cp lib/Bio/Seq/TraceI.pm blib/lib/Bio/Seq/TraceI.pm cp lib/Bio/SearchIO/megablast.pm blib/lib/Bio/SearchIO/megablast.pm cp lib/Bio/Seq/QualI.pm blib/lib/Bio/Seq/QualI.pm cp lib/Bio/Seq/MetaI.pm blib/lib/Bio/Seq/MetaI.pm cp lib/Bio/Seq/Meta/Array.pm blib/lib/Bio/Seq/Meta/Array.pm cp lib/Bio/SeqFeature/AnnotationAdaptor.pm blib/lib/Bio/SeqFeature/AnnotationAdaptor.pm cp lib/Bio/Seq/PrimedSeq.pm blib/lib/Bio/Seq/PrimedSeq.pm cp lib/Bio/Seq/RichSeqI.pm blib/lib/Bio/Seq/RichSeqI.pm cp lib/Bio/Seq/LargePrimarySeq.pm blib/lib/Bio/Seq/LargePrimarySeq.pm cp lib/Bio/SearchIO/infernal.pm blib/lib/Bio/SearchIO/infernal.pm cp lib/Bio/Seq/LargeSeqI.pm blib/lib/Bio/Seq/LargeSeqI.pm cp lib/Bio/SeqIO/ace.pm blib/lib/Bio/SeqIO/ace.pm cp lib/Bio/SeqFeature/Gene/UTR.pm blib/lib/Bio/SeqFeature/Gene/UTR.pm cp lib/Bio/SeqFeature/Gene/Promoter.pm blib/lib/Bio/SeqFeature/Gene/Promoter.pm cp lib/Bio/SeqIO/bsml_sax.pm blib/lib/Bio/SeqIO/bsml_sax.pm cp lib/Bio/SeqFeature/Tools/TypeMapper.pm blib/lib/Bio/SeqFeature/Tools/TypeMapper.pm cp lib/Bio/SeqFeature/Tools/Unflattener.pm blib/lib/Bio/SeqFeature/Tools/Unflattener.pm cp lib/Bio/SeqFeature/Gene/Poly_A_site.pm blib/lib/Bio/SeqFeature/Gene/Poly_A_site.pm cp lib/Bio/SeqIO/fasta.pm blib/lib/Bio/SeqIO/fasta.pm cp lib/Bio/SeqFeature/Tools/IDHandler.pm blib/lib/Bio/SeqFeature/Tools/IDHandler.pm cp lib/Bio/SeqFeature/SimilarityPair.pm blib/lib/Bio/SeqFeature/SimilarityPair.pm cp lib/Bio/SeqFeature/Tools/FeatureNamer.pm blib/lib/Bio/SeqFeature/Tools/FeatureNamer.pm cp lib/Bio/SeqFeature/PositionProxy.pm blib/lib/Bio/SeqFeature/PositionProxy.pm cp lib/Bio/SeqIO/asciitree.pm blib/lib/Bio/SeqIO/asciitree.pm cp lib/Bio/SeqIO/MultiFile.pm blib/lib/Bio/SeqIO/MultiFile.pm cp lib/Bio/SeqFeature/Primer.pm blib/lib/Bio/SeqFeature/Primer.pm cp lib/Bio/SeqFeatureI.pm blib/lib/Bio/SeqFeatureI.pm cp lib/Bio/SeqFeature/Similarity.pm blib/lib/Bio/SeqFeature/Similarity.pm cp lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm blib/lib/Bio/SeqIO/Handler/GenericRichSeqHandler.pm cp lib/Bio/SeqFeature/Gene/Transcript.pm blib/lib/Bio/SeqFeature/Gene/Transcript.pm cp lib/Bio/SeqI.pm blib/lib/Bio/SeqI.pm cp lib/Bio/SeqFeature/Gene/GeneStructure.pm blib/lib/Bio/SeqFeature/Gene/GeneStructure.pm cp lib/Bio/SeqFeature/Gene/NC_Feature.pm blib/lib/Bio/SeqFeature/Gene/NC_Feature.pm cp lib/Bio/SeqIO/fastq.pm blib/lib/Bio/SeqIO/fastq.pm cp lib/Bio/SeqFeature/Lite.pm blib/lib/Bio/SeqFeature/Lite.pm cp lib/Bio/SeqFeature/Gene/TranscriptI.pm blib/lib/Bio/SeqFeature/Gene/TranscriptI.pm cp lib/Bio/SeqFeature/TypedSeqFeatureI.pm blib/lib/Bio/SeqFeature/TypedSeqFeatureI.pm cp lib/Bio/SeqFeature/Generic.pm blib/lib/Bio/SeqFeature/Generic.pm cp lib/Bio/SeqFeature/SubSeq.pm blib/lib/Bio/SeqFeature/SubSeq.pm cp lib/Bio/SeqFeature/Gene/GeneStructureI.pm blib/lib/Bio/SeqFeature/Gene/GeneStructureI.pm cp lib/Bio/SeqIO/embl.pm blib/lib/Bio/SeqIO/embl.pm cp lib/Bio/SeqIO.pm blib/lib/Bio/SeqIO.pm cp lib/Bio/SeqFeature/Gene/ExonI.pm blib/lib/Bio/SeqFeature/Gene/ExonI.pm cp lib/Bio/SeqIO/embldriver.pm blib/lib/Bio/SeqIO/embldriver.pm cp lib/Bio/SeqFeature/Gene/Intron.pm blib/lib/Bio/SeqFeature/Gene/Intron.pm cp lib/Bio/SeqIO/bsml.pm blib/lib/Bio/SeqIO/bsml.pm cp lib/Bio/SeqIO/FTHelper.pm blib/lib/Bio/SeqIO/FTHelper.pm cp lib/Bio/Species.pm blib/lib/Bio/Species.pm cp lib/Bio/SeqIO/game/seqHandler.pm blib/lib/Bio/SeqIO/game/seqHandler.pm cp lib/Bio/SeqIO/msout.pm blib/lib/Bio/SeqIO/msout.pm cp lib/Bio/Tools/AnalysisResult.pm blib/lib/Bio/Tools/AnalysisResult.pm cp lib/Bio/SeqIO/pir.pm blib/lib/Bio/SeqIO/pir.pm cp lib/Bio/SimpleAnalysisI.pm blib/lib/Bio/SimpleAnalysisI.pm cp lib/Bio/SeqIO/tigr.pm blib/lib/Bio/SeqIO/tigr.pm cp lib/Bio/SeqIO/seqxml.pm blib/lib/Bio/SeqIO/seqxml.pm cp lib/Bio/SeqIO/gbxml.pm blib/lib/Bio/SeqIO/gbxml.pm cp lib/Bio/SeqIO/mbsout.pm blib/lib/Bio/SeqIO/mbsout.pm cp lib/Bio/SeqIO/scf.pm blib/lib/Bio/SeqIO/scf.pm cp lib/Bio/SeqIO/metafasta.pm blib/lib/Bio/SeqIO/metafasta.pm cp lib/Bio/SeqIO/tinyseq/tinyseqHandler.pm blib/lib/Bio/SeqIO/tinyseq/tinyseqHandler.pm cp lib/Bio/Tools/Alignment/Trim.pm blib/lib/Bio/Tools/Alignment/Trim.pm cp lib/Bio/SeqIO/table.pm blib/lib/Bio/SeqIO/table.pm cp lib/Bio/SeqIO/raw.pm blib/lib/Bio/SeqIO/raw.pm cp lib/Bio/Tools/Analysis/SimpleAnalysisBase.pm blib/lib/Bio/Tools/Analysis/SimpleAnalysisBase.pm cp lib/Bio/Taxon.pm blib/lib/Bio/Taxon.pm cp lib/Bio/SeqIO/qual.pm blib/lib/Bio/SeqIO/qual.pm cp lib/Bio/SeqIO/locuslink.pm blib/lib/Bio/SeqIO/locuslink.pm cp lib/Bio/SeqIO/genbank.pm blib/lib/Bio/SeqIO/genbank.pm cp lib/Bio/SeqIO/game.pm blib/lib/Bio/SeqIO/game.pm cp lib/Bio/SeqIO/largefasta.pm blib/lib/Bio/SeqIO/largefasta.pm cp lib/Bio/SeqIO/tigrxml.pm blib/lib/Bio/SeqIO/tigrxml.pm cp lib/Bio/SeqUtils.pm blib/lib/Bio/SeqUtils.pm cp lib/Bio/SeqIO/kegg.pm blib/lib/Bio/SeqIO/kegg.pm cp lib/Bio/SeqIO/tinyseq.pm blib/lib/Bio/SeqIO/tinyseq.pm cp lib/Bio/Tools/Alignment/Consed.pm blib/lib/Bio/Tools/Alignment/Consed.pm cp lib/Bio/SeqIO/swissdriver.pm blib/lib/Bio/SeqIO/swissdriver.pm cp lib/Bio/SeqIO/phd.pm blib/lib/Bio/SeqIO/phd.pm cp lib/Bio/SeqIO/game/gameHandler.pm blib/lib/Bio/SeqIO/game/gameHandler.pm cp lib/Bio/SimpleAlign.pm blib/lib/Bio/SimpleAlign.pm cp lib/Bio/SeqIO/swiss.pm blib/lib/Bio/SeqIO/swiss.pm cp lib/Bio/SeqIO/game/gameSubs.pm blib/lib/Bio/SeqIO/game/gameSubs.pm cp lib/Bio/SeqIO/game/gameWriter.pm blib/lib/Bio/SeqIO/game/gameWriter.pm cp lib/Bio/SeqIO/game/featHandler.pm blib/lib/Bio/SeqIO/game/featHandler.pm cp lib/Bio/SeqIO/interpro.pm blib/lib/Bio/SeqIO/interpro.pm cp lib/Bio/SeqIO/gcg.pm blib/lib/Bio/SeqIO/gcg.pm cp lib/Bio/SeqIO/tab.pm blib/lib/Bio/SeqIO/tab.pm cp lib/Bio/Tools/AmpliconSearch.pm blib/lib/Bio/Tools/AmpliconSearch.pm cp lib/Bio/SeqIO/gbdriver.pm blib/lib/Bio/SeqIO/gbdriver.pm cp lib/Bio/Tools/GFF.pm blib/lib/Bio/Tools/GFF.pm cp lib/Bio/Tools/Primer3.pm blib/lib/Bio/Tools/Primer3.pm cp lib/Bio/Tools/Prediction/Exon.pm blib/lib/Bio/Tools/Prediction/Exon.pm cp lib/Bio/Tools/Genomewise.pm blib/lib/Bio/Tools/Genomewise.pm cp lib/Bio/Tools/ECnumber.pm blib/lib/Bio/Tools/ECnumber.pm cp lib/Bio/Tools/Glimmer.pm blib/lib/Bio/Tools/Glimmer.pm cp lib/Bio/Tools/Phylo/Gerp.pm blib/lib/Bio/Tools/Phylo/Gerp.pm cp lib/Bio/Tools/CodonTable.pm blib/lib/Bio/Tools/CodonTable.pm cp lib/Bio/Tools/Promoterwise.pm blib/lib/Bio/Tools/Promoterwise.pm cp lib/Bio/Tools/Phylo/Molphy.pm blib/lib/Bio/Tools/Phylo/Molphy.pm cp lib/Bio/Tools/Genscan.pm blib/lib/Bio/Tools/Genscan.pm cp lib/Bio/Tools/FootPrinter.pm blib/lib/Bio/Tools/FootPrinter.pm cp lib/Bio/Tools/EPCR.pm blib/lib/Bio/Tools/EPCR.pm cp lib/Bio/Tools/ESTScan.pm blib/lib/Bio/Tools/ESTScan.pm cp lib/Bio/Tools/Prints.pm blib/lib/Bio/Tools/Prints.pm cp lib/Bio/Tools/Primer/AssessorI.pm blib/lib/Bio/Tools/Primer/AssessorI.pm cp lib/Bio/Tools/Phylo/Molphy/Result.pm blib/lib/Bio/Tools/Phylo/Molphy/Result.pm cp lib/Bio/Tools/Est2Genome.pm blib/lib/Bio/Tools/Est2Genome.pm cp lib/Bio/Tools/Profile.pm blib/lib/Bio/Tools/Profile.pm cp lib/Bio/Tools/Grail.pm blib/lib/Bio/Tools/Grail.pm cp lib/Bio/Tools/OddCodes.pm blib/lib/Bio/Tools/OddCodes.pm cp lib/Bio/Tools/MZEF.pm blib/lib/Bio/Tools/MZEF.pm cp lib/Bio/Tools/PrositeScan.pm blib/lib/Bio/Tools/PrositeScan.pm cp lib/Bio/Tools/Prediction/Gene.pm blib/lib/Bio/Tools/Prediction/Gene.pm cp lib/Bio/Tools/GuessSeqFormat.pm blib/lib/Bio/Tools/GuessSeqFormat.pm cp lib/Bio/Tools/Phylo/Phylip/ProtDist.pm blib/lib/Bio/Tools/Phylo/Phylip/ProtDist.pm cp lib/Bio/Tools/Fgenesh.pm blib/lib/Bio/Tools/Fgenesh.pm cp lib/Bio/Tools/Primer/Pair.pm blib/lib/Bio/Tools/Primer/Pair.pm cp lib/Bio/Tools/Genewise.pm blib/lib/Bio/Tools/Genewise.pm cp lib/Bio/Tools/IUPAC.pm blib/lib/Bio/Tools/IUPAC.pm cp lib/Bio/Tools/Lucy.pm blib/lib/Bio/Tools/Lucy.pm cp lib/Bio/Tools/Eponine.pm blib/lib/Bio/Tools/Eponine.pm cp lib/Bio/Tools/EMBOSS/Palindrome.pm blib/lib/Bio/Tools/EMBOSS/Palindrome.pm cp lib/Bio/Tools/Coil.pm blib/lib/Bio/Tools/Coil.pm cp lib/Bio/Tools/Primer/Feature.pm blib/lib/Bio/Tools/Primer/Feature.pm cp lib/Bio/Tools/Blat.pm blib/lib/Bio/Tools/Blat.pm cp lib/Bio/Tools/Geneid.pm blib/lib/Bio/Tools/Geneid.pm cp lib/Bio/Tools/Match.pm blib/lib/Bio/Tools/Match.pm cp lib/Bio/Tools/Primer/Assessor/Base.pm blib/lib/Bio/Tools/Primer/Assessor/Base.pm cp lib/Bio/Tools/Genemark.pm blib/lib/Bio/Tools/Genemark.pm cp lib/Bio/Tools/Run/WrapperBase.pm blib/lib/Bio/Tools/Run/WrapperBase.pm cp lib/Bio/Tools/Seg.pm blib/lib/Bio/Tools/Seg.pm cp lib/Bio/Tools/ipcress.pm blib/lib/Bio/Tools/ipcress.pm cp lib/Bio/Tools/RepeatMasker.pm blib/lib/Bio/Tools/RepeatMasker.pm cp lib/Bio/Tools/SeqPattern/Backtranslate.pm blib/lib/Bio/Tools/SeqPattern/Backtranslate.pm cp lib/Bio/Tree/DistanceFactory.pm blib/lib/Bio/Tree/DistanceFactory.pm cp lib/Bio/Tools/pICalculator.pm blib/lib/Bio/Tools/pICalculator.pm cp lib/Bio/Tree/RandomFactory.pm blib/lib/Bio/Tree/RandomFactory.pm cp lib/Bio/Tree/Node.pm blib/lib/Bio/Tree/Node.pm cp lib/Bio/Tree/Compatible.pm blib/lib/Bio/Tree/Compatible.pm cp lib/Bio/Tools/Spidey/Exon.pm blib/lib/Bio/Tools/Spidey/Exon.pm cp lib/Bio/Tools/QRNA.pm blib/lib/Bio/Tools/QRNA.pm cp lib/Bio/Tools/Run/ParametersI.pm blib/lib/Bio/Tools/Run/ParametersI.pm cp lib/Bio/Tools/Signalp/ExtendedSignalp.pm blib/lib/Bio/Tools/Signalp/ExtendedSignalp.pm cp lib/Bio/Tools/Spidey/Results.pm blib/lib/Bio/Tools/Spidey/Results.pm cp lib/Bio/Tree/AnnotatableNode.pm blib/lib/Bio/Tree/AnnotatableNode.pm cp lib/Bio/Tools/Run/Analysis.pm blib/lib/Bio/Tools/Run/Analysis.pm cp lib/Bio/Tools/SeqStats.pm blib/lib/Bio/Tools/SeqStats.pm cp lib/Bio/Tools/RandomDistFunctions.pm blib/lib/Bio/Tools/RandomDistFunctions.pm cp lib/Bio/Tools/Sim4/Results.pm blib/lib/Bio/Tools/Sim4/Results.pm cp lib/Bio/Tools/isPcr.pm blib/lib/Bio/Tools/isPcr.pm cp lib/Bio/Tools/tRNAscanSE.pm blib/lib/Bio/Tools/tRNAscanSE.pm cp lib/Bio/Tools/Sigcleave.pm blib/lib/Bio/Tools/Sigcleave.pm cp lib/Bio/Tools/Pseudowise.pm blib/lib/Bio/Tools/Pseudowise.pm cp lib/Bio/Tools/SeqPattern.pm blib/lib/Bio/Tools/SeqPattern.pm cp lib/Bio/Tools/Run/Phylo/PhyloBase.pm blib/lib/Bio/Tools/Run/Phylo/PhyloBase.pm cp lib/Bio/Tree/NodeI.pm blib/lib/Bio/Tree/NodeI.pm cp lib/Bio/Tools/Run/AnalysisFactory.pm blib/lib/Bio/Tools/Run/AnalysisFactory.pm cp lib/Bio/Tools/Run/WrapperBase/CommandExts.pm blib/lib/Bio/Tools/Run/WrapperBase/CommandExts.pm cp lib/Bio/Tools/Tmhmm.pm blib/lib/Bio/Tools/Tmhmm.pm cp lib/Bio/Tools/Run/GenericParameters.pm blib/lib/Bio/Tools/Run/GenericParameters.pm cp lib/Bio/Tree/NodeNHX.pm blib/lib/Bio/Tree/NodeNHX.pm cp lib/Bio/Tools/Sim4/Exon.pm blib/lib/Bio/Tools/Sim4/Exon.pm cp lib/Bio/Tools/Signalp.pm blib/lib/Bio/Tools/Signalp.pm cp lib/Bio/Tools/SeqWords.pm blib/lib/Bio/Tools/SeqWords.pm cp lib/Bio/Tools/TandemRepeatsFinder.pm blib/lib/Bio/Tools/TandemRepeatsFinder.pm cp lib/Bio/Tools/TargetP.pm blib/lib/Bio/Tools/TargetP.pm cp lib/Bio/WebAgent.pm blib/lib/Bio/WebAgent.pm cp lib/Bio/TreeIO/nhx.pm blib/lib/Bio/TreeIO/nhx.pm cp lib/BioPerl.pm blib/lib/BioPerl.pm cp lib/Bio/TreeIO/cluster.pm blib/lib/Bio/TreeIO/cluster.pm cp lib/Bio/Tree/Tree.pm blib/lib/Bio/Tree/Tree.pm cp lib/Bio/TreeIO/TreeEventBuilder.pm blib/lib/Bio/TreeIO/TreeEventBuilder.pm cp lib/Bio/TreeIO.pm blib/lib/Bio/TreeIO.pm cp lib/Bio/UpdateableSeqI.pm blib/lib/Bio/UpdateableSeqI.pm cp lib/Bio/TreeIO/nexus.pm blib/lib/Bio/TreeIO/nexus.pm cp lib/Bio/TreeIO/newick.pm blib/lib/Bio/TreeIO/newick.pm cp lib/Bio/TreeIO/tabtree.pm blib/lib/Bio/TreeIO/tabtree.pm cp lib/Bio/Tree/TreeI.pm blib/lib/Bio/Tree/TreeI.pm cp lib/Bio/TreeIO/pag.pm blib/lib/Bio/TreeIO/pag.pm cp lib/Bio/TreeIO/NewickParser.pm blib/lib/Bio/TreeIO/NewickParser.pm cp lib/Bio/Tree/TreeFunctionsI.pm blib/lib/Bio/Tree/TreeFunctionsI.pm cp lib/Bio/TreeIO/lintree.pm blib/lib/Bio/TreeIO/lintree.pm cp lib/Bio/Tree/Statistics.pm blib/lib/Bio/Tree/Statistics.pm cp lib/Bio/TreeIO/phyloxml.pm blib/lib/Bio/TreeIO/phyloxml.pm cp bin/bp_biogetseq blib/script/bp_biogetseq "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_biogetseq cp bin/bp_bioflat_index blib/script/bp_bioflat_index "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_bioflat_index cp bin/bp_aacomp blib/script/bp_aacomp "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_aacomp cp bin/bp_dbsplit blib/script/bp_dbsplit "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_dbsplit cp bin/bp_extract_feature_seq blib/script/bp_extract_feature_seq "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_extract_feature_seq cp bin/bp_filter_search blib/script/bp_filter_search "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_filter_search cp bin/bp_fetch blib/script/bp_fetch "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_fetch cp bin/bp_fastam9_to_table blib/script/bp_fastam9_to_table "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_fastam9_to_table cp bin/bp_find-blast-matches blib/script/bp_find-blast-matches "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_find-blast-matches cp bin/bp_gccalc blib/script/bp_gccalc "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_gccalc cp bin/bp_genbank2gff3 blib/script/bp_genbank2gff3 "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_genbank2gff3 cp bin/bp_index blib/script/bp_index "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_index cp bin/bp_local_taxonomydb_query blib/script/bp_local_taxonomydb_query "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_local_taxonomydb_query cp bin/bp_make_mrna_protein blib/script/bp_make_mrna_protein "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_make_mrna_protein cp bin/bp_mask_by_search blib/script/bp_mask_by_search "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_mask_by_search cp bin/bp_mrtrans blib/script/bp_mrtrans "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_mrtrans cp bin/bp_nexus2nh blib/script/bp_nexus2nh "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_nexus2nh cp bin/bp_nrdb blib/script/bp_nrdb "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_nrdb cp bin/bp_mutate blib/script/bp_mutate "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_mutate cp bin/bp_process_gadfly blib/script/bp_process_gadfly "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_process_gadfly cp bin/bp_process_sgd blib/script/bp_process_sgd "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_process_sgd cp bin/bp_search2alnblocks blib/script/bp_search2alnblocks "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_search2alnblocks cp bin/bp_revtrans-motif blib/script/bp_revtrans-motif "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_revtrans-motif cp bin/bp_oligo_count blib/script/bp_oligo_count "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_oligo_count cp bin/bp_search2table blib/script/bp_search2table "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_search2table cp bin/bp_search2gff blib/script/bp_search2gff "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_search2gff cp bin/bp_seqconvert blib/script/bp_seqconvert "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqconvert cp bin/bp_seqret blib/script/bp_seqret "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqret cp bin/bp_seqcut blib/script/bp_seqcut "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqcut cp bin/bp_seq_length blib/script/bp_seq_length "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seq_length cp bin/bp_search2tribe blib/script/bp_search2tribe "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_search2tribe cp bin/bp_seqpart blib/script/bp_seqpart "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqpart cp bin/bp_split_seq blib/script/bp_split_seq "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_split_seq cp bin/bp_seqretsplit blib/script/bp_seqretsplit "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_seqretsplit cp bin/bp_sreformat blib/script/bp_sreformat "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_sreformat cp bin/bp_taxid4species blib/script/bp_taxid4species "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_taxid4species cp bin/bp_taxonomy2tree blib/script/bp_taxonomy2tree "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_taxonomy2tree cp bin/bp_translate_seq blib/script/bp_translate_seq "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_translate_seq cp bin/bp_tree2pag blib/script/bp_tree2pag "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_tree2pag cp bin/bp_unflatten_seq blib/script/bp_unflatten_seq "/usr/bin/perl5.32.0" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_unflatten_seq Manifying 40 pod documents Manifying 34 pod documents Manifying 33 pod documents Manifying 32 pod documents Manifying 34 pod documents Manifying 32 pod documents Manifying 32 pod documents Manifying 31 pod documents Manifying 27 pod documents Manifying 35 pod documents Manifying 29 pod documents Manifying 34 pod documents Manifying 36 pod documents Manifying 33 pod documents Manifying 32 pod documents Manifying 18 pod documents + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.kZhri6 + umask 022 + cd /home/iurt/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64 '!=' / ']' + rm -rf /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64 ++ dirname /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64 + mkdir -p /home/iurt/rpmbuild/BUILDROOT + mkdir /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64 + cd BioPerl-1.7.7 + '[' 1 -eq 1 ']' + /usr/bin/make install DESTDIR=/home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64 'INSTALL=/usr/bin/install -p' Manifying 40 pod documents Manifying 34 pod documents Manifying 33 pod documents Manifying 32 pod documents Manifying 34 pod documents Manifying 32 pod documents Manifying 32 pod documents Manifying 31 pod documents Manifying 27 pod documents Manifying 35 pod documents Manifying 29 pod documents Manifying 34 pod documents Manifying 36 pod documents Manifying 33 pod documents Manifying 32 pod documents Manifying 18 pod documents Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/BioPerl.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/UpdateableSeqI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/DasI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/LocationI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Taxon.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/LocatableSeq.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SimpleAnalysisI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/PrimarySeq.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AnnotatableI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Species.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AnalysisI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Seq.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/PrimarySeqI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/ParameterBaseI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SeqAnalysisParserI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AnnotationCollectionI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/FeatureHolderI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AnalysisResultI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SearchIO.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/OntologyIO.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/RangeI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/DescribableI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/HandlerBaseI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/DBLinkContainerI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SeqUtils.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/WebAgent.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SeqFeatureI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AnnotationI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SeqIO.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Range.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/IdentifiableI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/PullParserI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AnalysisParserI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/IdCollectionI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SimpleAlign.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SeqI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/arp.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/xmfa.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/phylip.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/bl2seq.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/maf.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/psi.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/mega.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/metafasta.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/largemultifasta.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/prodom.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/proda.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/po.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/mase.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/fasta.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/emboss.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/meme.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/clustalw.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/pfam.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/msf.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/selex.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/nexus.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/AlignIO/Handler/GenericAlignHandler.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/SplitLocationI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/Split.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/AvWithinCoordPolicy.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/WidestCoordPolicy.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/CoordinatePolicyI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/FuzzyLocationI.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/Fuzzy.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/Atomic.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/Simple.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/Location/NarrowestCoordPolicy.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/cluster.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/TreeEventBuilder.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/nhx.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/pag.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/lintree.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/newick.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/tabtree.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/NewickParser.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/phyloxml.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/TreeIO/nexus.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SeqFeature/Generic.pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/SeqFeature/Collection.pm Installing 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/home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Location::FuzzyLocationI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::GuessSeqFormat.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Ontology::SimpleGOEngine::GraphAdaptor.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::ipcress.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Factory::SequenceStreamI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Align::DNAStatistics.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::Processor.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::DB::Taxonomy::list.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::Phylo::Phylip::ProtDist.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::HSP::PullHSPI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Seq::Meta.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::SeqIO::locuslink.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Ontology::OntologyStore.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Matrix::PSM::SiteMatrix.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::AlignIO::msf.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::TandemRepeatsFinder.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Location::Simple.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::Iteration::IterationI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Align::PairwiseStatistics.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Annotation::Comment.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::HSP::FastaHSP.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Location::WidestCoordPolicy.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Ontology::InterProTerm.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::DB::LocationI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::AlignIO::mase.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Event::EventHandlerI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::Result::WABAResult.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Index::AbstractSeq.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::Hit::BlastHit.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::SeqFeature::CollectionI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::SeqFeature::FeaturePair.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::AlignIO::metafasta.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::OntologyIO::obo.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Annotation::SimpleValue.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::TreeIO::NewickParser.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::SeqStats.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tree::Tree.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::HSP::ModelHSP.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::Result::BlastResult.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::Alignment::Trim.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::HSP::WABAHSP.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::SeqFeature::PositionProxy.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::DB::DBFetch.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::DB::WebDBSeqI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::Run::AnalysisFactory.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::RandomDistFunctions.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::AlignIO::mega.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Factory::ObjectBuilderI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::AlignIO::meme.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Index::SwissPfam.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::SearchUtils.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Matrix::PSM::SiteMatrixI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::IUPAC.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::AnnotationCollectionI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::SeqIO::tigrxml.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Matrix::PSM::IO::transfac.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::GFF.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::Fgenesh.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::DBLinkContainerI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::SeqFeature::AnnotationAdaptor.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::Alignment::Consed.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::DB::Qual.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::SearchIO::EventHandlerI.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::Genscan.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Seq::LargePrimarySeq.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::SeqIO::kegg.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Index::BlastTable.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Index::GenBank.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Matrix::PSM::ProtPsm.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Search::HSP::BlastHSP.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::EPCR.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::SeqFeature::Computation.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Tools::Prediction::Exon.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/man/man3/Bio::Taxon.3pm Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_seqcut Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_sreformat Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_genbank2gff3 Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_nrdb Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_mutate Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_translate_seq Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_process_gadfly Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_seqretsplit Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_tree2pag Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_mask_by_search Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_local_taxonomydb_query Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_seq_length Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_biogetseq Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_index Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_split_seq Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_nexus2nh Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_taxid4species Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_oligo_count Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_search2alnblocks Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_find-blast-matches Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_fastam9_to_table Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_search2gff Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_taxonomy2tree Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_process_sgd Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_aacomp Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_dbsplit Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_bioflat_index Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_unflatten_seq Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_mrtrans Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_seqconvert Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_fetch Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_gccalc Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_seqpart Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_filter_search Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_search2table Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_extract_feature_seq Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_make_mrna_protein Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_revtrans-motif Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_seqret Installing /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/bin/bp_search2tribe Appending installation info to /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/lib64/perl5/perllocal.pod + find /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/perl5/vendor_perl/Bio/ -name '*.pm' -exec chmod 644 '{}' ';' + executables='.*\(\.\(pl\|cgi\)\|pdf2index\|dbfetch\)$' + for dir in examples + find examples -type f -regex '.*\(\.\(pl\|cgi\)\|pdf2index\|dbfetch\)$' + xargs chmod 644 + find examples -type f -regex '.*\(\.\(pl\|cgi\)\|pdf2index\|dbfetch\)$' + xargs perl -pi -e 's|^#!/usr/local/bin/perl|#!/usr/bin/perl|' + find examples -type f '!' -regex '.*\(\.\(pl\|cgi\)\|pdf2index\|dbfetch\)$' + xargs chmod 644 + find examples -type f + xargs perl -pi -e 'BEGIN {exit unless -T $ARGV[0];} tr/\r//d;' + /usr/lib/rpm/find-debuginfo.sh -j8 --strict-build-id -m -i --build-id-seed 1.7.7-2.mga8 --unique-debug-suffix -1.7.7-2.mga8.aarch64 --unique-debug-src-base perl-BioPerl-1.7.7-2.mga8.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /home/iurt/rpmbuild/BUILD/BioPerl-1.7.7 + /usr/lib/rpm/check-buildroot + '[' -n '' ']' + /usr/share/spec-helper/clean_files + '[' -n '' ']' + /usr/share/spec-helper/compress_files .xz + '[' -n '' ']' + /usr/share/spec-helper/relink_symlinks + '[' -n '' ']' + /usr/share/spec-helper/clean_perl + '[' -n '' ']' + /usr/share/spec-helper/lib_symlinks + '[' -n '' ']' + /usr/share/spec-helper/gprintify + '[' -n '' ']' + /usr/share/spec-helper/fix_mo + '[' -n '' ']' + /usr/share/spec-helper/fix_pamd + '[' -n '' ']' + /usr/share/spec-helper/remove_info_dir + '[' -n '' ']' + /usr/share/spec-helper/fix_eol + '[' -n '' ']' + /usr/share/spec-helper/check_desktop_files + '[' -n '' ']' + /usr/share/spec-helper/check_elf_files + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python3 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.sBlW08 + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd BioPerl-1.7.7 + '[' 1 -eq 1 ']' + rm -f t/SeqIO/bsml_sax.t + make test PERL_DL_NONLAZY=1 PERL_USE_UNSAFE_INC=1 "/usr/bin/perl5.32.0" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/Align/*.t t/AlignIO/*.t t/Annotation/*.t t/LocalDB/*.t t/LocalDB/Index/*.t t/LocalDB/Taxonomy/*.t t/Matrix/*.t t/Matrix/IO/*.t t/Ontology/*.t t/Ontology/IO/*.t t/RemoteDB/*.t t/Root/*.t t/SearchIO/*.t t/SearchIO/Writer/*.t t/Seq/*.t t/SeqFeature/*.t t/SeqIO/*.t t/SeqTools/*.t t/Tools/*.t t/Tools/Alignment/*.t t/Tools/EMBOSS/*.t t/Tools/Phylo/*.t t/Tools/Phylo/Phylip/*.t t/Tools/Signalp/*.t t/Tools/Spidey/*.t t/Tree/*.t t/Tree/TreeIO/*.t t/00-compile.t ...................... ok t/Align/AlignStats.t ................ ok t/Align/AlignUtil.t ................. ok t/Align/SimpleAlign.t ............... ok t/Align/TreeBuild.t ................. ok t/Align/Utilities.t ................. ok t/AlignIO/AlignIO.t ................. ok t/AlignIO/arp.t ..................... ok t/AlignIO/bl2seq.t .................. ok t/AlignIO/clustalw.t ................ ok t/AlignIO/emboss.t .................. ok t/AlignIO/fasta.t ................... ok t/AlignIO/largemultifasta.t ......... ok t/AlignIO/maf.t ..................... ok t/AlignIO/mase.t .................... ok t/AlignIO/mega.t .................... ok t/AlignIO/meme.t .................... ok t/AlignIO/metafasta.t ............... ok t/AlignIO/msf.t ..................... ok t/AlignIO/nexus.t ................... ok t/AlignIO/pfam.t .................... ok t/AlignIO/phylip.t .................. ok t/AlignIO/po.t ...................... ok t/AlignIO/prodom.t .................. ok t/AlignIO/psi.t ..................... ok t/AlignIO/selex.t ................... ok t/AlignIO/xmfa.t .................... ok t/Annotation/Annotation.t ........... ok t/Annotation/AnnotationAdaptor.t .... ok t/author-mojibake.t ................. skipped: these tests are for testing by the author t/author-pod-syntax.t ............... skipped: these tests are for testing by the author t/LocalDB/Fasta.t ................... ok t/LocalDB/Flat.t .................... ok t/LocalDB/Index/Blast.t ............. ok t/LocalDB/Index/BlastTable.t ........ ok t/LocalDB/Index/Index.t ............. ok t/LocalDB/Qual.t .................... ok t/LocalDB/Registry.t ................ ok t/LocalDB/Taxonomy/greengenes.t ..... ok t/LocalDB/Taxonomy/silva.t .......... ok t/Matrix/InstanceSite.t ............. ok t/Matrix/IO/masta.t ................. ok t/Matrix/IO/psm.t ................... ok t/Matrix/Matrix.t ................... ok t/Matrix/ProtMatrix.t ............... ok t/Matrix/ProtPsm.t .................. ok t/Matrix/SiteMatrix.t ............... ok t/Ontology/GOterm.t ................. ok t/Ontology/GraphAdaptor.t ........... ok t/Ontology/IO/go.t .................. ok t/Ontology/IO/interpro.t ............ ok t/Ontology/IO/obo.t ................. ok t/Ontology/Ontology.t ............... ok t/Ontology/OntologyEngine.t ......... ok t/Ontology/OntologyStore.t .......... skipped: Network tests have not been requested t/Ontology/Relationship.t ........... ok t/Ontology/RelationshipType.t ....... ok t/Ontology/Term.t ................... ok t/RemoteDB/SeqRead_fail.t ........... skipped: Network tests have not been requested t/RemoteDB/Taxonomy.t ............... ok t/Root/Exception.t .................. ok t/Root/HTTPget.t .................... skipped: Network tests have not been requested t/Root/IO.t ......................... ok t/Root/RootI.t ...................... ok t/Root/RootIO.t ..................... skipped: Network tests have not been requested t/Root/Storable.t ................... ok t/Root/Utilities.t .................. ok t/SearchIO/axt.t .................... ok t/SearchIO/blast.t .................. ok t/SearchIO/blast_pull.t ............. ok t/SearchIO/blasttable.t ............. ok t/SearchIO/CigarString.t ............ ok t/SearchIO/cross_match.t ............ ok t/SearchIO/erpin.t .................. ok t/SearchIO/exonerate.t .............. ok t/SearchIO/fasta.t .................. ok t/SearchIO/gmap_f9.t ................ ok t/SearchIO/infernal.t ............... ok t/SearchIO/megablast.t .............. ok t/SearchIO/psl.t .................... ok t/SearchIO/rnamotif.t ............... ok t/SearchIO/SearchIO.t ............... ok t/SearchIO/sim4.t ................... ok t/SearchIO/SimilarityPair.t ......... ok t/SearchIO/Tiling.t ................. ok t/SearchIO/waba.t ................... ok t/SearchIO/wise.t ................... ok t/SearchIO/Writer/GbrowseGFF.t ...... ok t/SearchIO/Writer/HitTableWriter.t .. ok t/SearchIO/Writer/HSPTableWriter.t .. ok t/SearchIO/Writer/HTMLWriter.t ...... ok t/SearchIO/Writer/TextWriter.t ...... ok t/Seq/DBLink.t ...................... ok t/Seq/EncodedSeq.t .................. ok t/Seq/LargeLocatableSeq.t ........... ok t/Seq/LargePSeq.t ................... ok t/Seq/LocatableSeq.t ................ ok t/Seq/MetaSeq.t ..................... ok t/Seq/PrimaryQual.t ................. ok t/Seq/PrimarySeq.t .................. ok t/Seq/PrimedSeq.t ................... ok t/Seq/Quality.t ..................... ok t/Seq/Seq.t ......................... ok t/Seq/SimulatedRead.t ............... ok t/SeqFeature/Amplicon.t ............. ok t/SeqFeature/Clone.t ................ ok t/SeqFeature/Collection.t ........... ok t/SeqFeature/Computation.t .......... ok t/SeqFeature/FeaturePair.t .......... ok t/SeqFeature/Gene.t ................. ok t/SeqFeature/Generic.t .............. ok t/SeqFeature/Location.t ............. ok t/SeqFeature/LocationFactory.t ...... ok t/SeqFeature/Primer.t ............... ok t/SeqFeature/Range.t ................ ok t/SeqFeature/RangeI.t ............... ok t/SeqFeature/SeqAnalysisParser.t .... ok t/SeqFeature/SubSeq.t ............... ok t/SeqFeature/Unflattener.t .......... ok t/SeqIO/ace.t ....................... ok t/SeqIO/asciitree.t ................. ok t/SeqIO/bsml.t ...................... ok t/SeqIO/embl.t ...................... ok t/SeqIO/fasta.t ..................... ok t/SeqIO/fastq.t ..................... ok t/SeqIO/game.t ...................... ok t/SeqIO/gbxml.t ..................... ok t/SeqIO/gcg.t ....................... ok t/SeqIO/genbank.t ................... ok t/SeqIO/Handler.t ................... ok t/SeqIO/interpro.t .................. ok t/SeqIO/kegg.t ...................... ok t/SeqIO/largefasta.t ................ ok t/SeqIO/locuslink.t ................. ok t/SeqIO/mbsout.t .................... ok t/SeqIO/metafasta.t ................. ok t/SeqIO/msout.t ..................... ok t/SeqIO/MultiFile.t ................. ok t/SeqIO/Multiple_fasta.t ............ ok t/SeqIO/phd.t ....................... ok t/SeqIO/pir.t ....................... ok t/SeqIO/qual.t ...................... ok t/SeqIO/raw.t ....................... ok t/SeqIO/scf.t ....................... ok t/SeqIO/SeqBuilder.t ................ ok t/SeqIO/SeqIO.t ..................... ok t/SeqIO/seqxml.t .................... ok t/SeqIO/Splicedseq.t ................ ok t/SeqIO/swiss.t ..................... ok t/SeqIO/tab.t ....................... ok t/SeqIO/table.t ..................... ok t/SeqIO/tigr.t ...................... ok t/SeqIO/tigrxml.t ................... ok t/SeqIO/tinyseq.t ................... ok t/SeqTools/Backtranslate.t .......... ok t/SeqTools/CodonTable.t ............. ok t/SeqTools/ECnumber.t ............... ok t/SeqTools/GuessSeqFormat.t ......... ok t/SeqTools/OddCodes.t ............... ok t/SeqTools/SeqPattern.t ............. ok t/SeqTools/SeqStats.t ............... ok t/SeqTools/SeqUtils.t ............... ok t/SeqTools/SeqWords.t ............... ok t/Species.t ......................... ok t/Tools/Alignment/Consed.t .......... ok t/Tools/AmpliconSearch.t ............ ok t/Tools/EMBOSS/Palindrome.t ......... ok t/Tools/ePCR.t ...................... ok t/Tools/Est2Genome.t ................ ok t/Tools/FootPrinter.t ............... ok t/Tools/Geneid.t .................... ok t/Tools/Genewise.t .................. ok t/Tools/Genomewise.t ................ ok t/Tools/Genpred.t ................... ok t/Tools/GFF.t ....................... ok t/Tools/IUPAC.t ..................... ok t/Tools/Lucy.t ...................... ok t/Tools/Match.t ..................... ok t/Tools/Phylo/Gerp.t ................ ok t/Tools/Phylo/Molphy.t .............. ok t/Tools/Phylo/Phylip/ProtDist.t ..... ok t/Tools/pICalculator.t .............. ok t/Tools/Primer3.t ................... ok t/Tools/Promoterwise.t .............. ok t/Tools/PrositeScan.t ............... ok t/Tools/Pseudowise.t ................ ok t/Tools/QRNA.t ...................... ok t/Tools/RandDistFunctions.t ......... ok t/Tools/RepeatMasker.t .............. ok t/Tools/Seg.t ....................... ok t/Tools/Sigcleave.t ................. ok t/Tools/Signalp.t ................... ok t/Tools/Signalp/ExtendedSignalp.t ... ok t/Tools/Sim4.t ...................... ok t/Tools/Spidey/Spidey.t ............. ok t/Tools/TandemRepeatsFinder.t ....... ok t/Tools/TargetP.t ................... ok t/Tools/Tmhmm.t ..................... ok t/Tools/tRNAscanSE.t ................ ok t/Tree/Compatible.t ................. ok t/Tree/Node.t ....................... ok t/Tree/RandomTreeFactory.t .......... ok t/Tree/Tree.t ....................... ok t/Tree/TreeIO.t ..................... ok t/Tree/TreeIO/lintree.t ............. ok t/Tree/TreeIO/newick.t .............. ok t/Tree/TreeIO/nexus.t ............... ok t/Tree/TreeIO/nhx.t ................. ok t/Tree/TreeIO/phyloxml.t ............ ok t/Tree/TreeIO/tabtree.t ............. ok t/Tree/TreeStatistics.t ............. ok All tests successful. Files=211, Tests=14797, 260 wallclock secs ( 3.77 usr 0.49 sys + 221.91 cusr 16.35 csys = 242.52 CPU) Result: PASS + RPM_EC=0 ++ jobs -p + exit 0 Processing files: perl-BioPerl-1.7.7-2.mga8.noarch Executing(%doc): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.HNs7m8 + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd BioPerl-1.7.7 + DOCDIR=/home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/doc/perl-BioPerl + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/doc/perl-BioPerl + cp -pr AUTHORS /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/doc/perl-BioPerl + cp -pr Changes /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/doc/perl-BioPerl + cp -pr LICENSE /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/doc/perl-BioPerl + cp -pr META.json /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/doc/perl-BioPerl + cp -pr META.yml /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/doc/perl-BioPerl + cp -pr MYMETA.yml /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/doc/perl-BioPerl + cp -pr examples /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64/usr/share/doc/perl-BioPerl + RPM_EC=0 ++ jobs -p + exit 0 Provides: perl(Bio::Align::AlignI) = 1.7.7 perl(Bio::Align::DNAStatistics) = 1.7.7 perl(Bio::Align::PairwiseStatistics) = 1.7.7 perl(Bio::Align::ProteinStatistics) = 1.7.7 perl(Bio::Align::StatisticsI) = 1.7.7 perl(Bio::Align::Utilities) = 1.7.7 perl(Bio::AlignIO) = 1.7.7 perl(Bio::AlignIO::Handler::GenericAlignHandler) = 1.7.7 perl(Bio::AlignIO::arp) = 1.7.7 perl(Bio::AlignIO::bl2seq) = 1.7.7 perl(Bio::AlignIO::clustalw) = 1.7.7 perl(Bio::AlignIO::emboss) = 1.7.7 perl(Bio::AlignIO::fasta) = 1.7.7 perl(Bio::AlignIO::largemultifasta) = 1.7.7 perl(Bio::AlignIO::maf) = 1.7.7 perl(Bio::AlignIO::mase) = 1.7.7 perl(Bio::AlignIO::mega) = 1.7.7 perl(Bio::AlignIO::meme) = 1.7.7 perl(Bio::AlignIO::metafasta) = 1.7.7 perl(Bio::AlignIO::msf) = 1.7.7 perl(Bio::AlignIO::nexus) = 1.7.7 perl(Bio::AlignIO::pfam) = 1.7.7 perl(Bio::AlignIO::phylip) = 1.7.7 perl(Bio::AlignIO::po) = 1.7.7 perl(Bio::AlignIO::proda) = 1.7.7 perl(Bio::AlignIO::prodom) = 1.7.7 perl(Bio::AlignIO::psi) = 1.7.7 perl(Bio::AlignIO::selex) = 1.7.7 perl(Bio::AlignIO::xmfa) = 1.7.7 perl(Bio::AnalysisI) = 1.7.7 perl(Bio::AnalysisI::JobI) = 1.7.7 perl(Bio::AnalysisParserI) = 1.7.7 perl(Bio::AnalysisResultI) = 1.7.7 perl(Bio::AnnotatableI) = 1.7.7 perl(Bio::Annotation::AnnotationFactory) = 1.7.7 perl(Bio::Annotation::Collection) = 1.7.7 perl(Bio::Annotation::Comment) = 1.7.7 perl(Bio::Annotation::DBLink) = 1.7.7 perl(Bio::Annotation::OntologyTerm) = 1.7.7 perl(Bio::Annotation::Reference) = 1.7.7 perl(Bio::Annotation::Relation) = 1.7.7 perl(Bio::Annotation::SimpleValue) = 1.7.7 perl(Bio::Annotation::StructuredValue) = 1.7.7 perl(Bio::Annotation::TagTree) = 1.7.7 perl(Bio::Annotation::Target) = 1.7.7 perl(Bio::Annotation::Tree) = 1.7.7 perl(Bio::Annotation::TypeManager) = 1.7.7 perl(Bio::AnnotationCollectionI) = 1.7.7 perl(Bio::AnnotationI) = 1.7.7 perl(Bio::CodonUsage::IO) = 1.7.7 perl(Bio::CodonUsage::Table) = 1.7.7 perl(Bio::DB::DBFetch) = 1.7.7 perl(Bio::DB::Failover) = 1.7.7 perl(Bio::DB::Fasta) = 1.7.7 perl(Bio::DB::FileCache) = 1.7.7 perl(Bio::DB::Flat) = 1.7.7 perl(Bio::DB::Flat::BDB) = 1.7.7 perl(Bio::DB::Flat::BDB::embl) = 1.7.7 perl(Bio::DB::Flat::BDB::fasta) = 1.7.7 perl(Bio::DB::Flat::BDB::genbank) = 1.7.7 perl(Bio::DB::Flat::BDB::swiss) = 1.7.7 perl(Bio::DB::Flat::BinarySearch) = 1.7.7 perl(Bio::DB::GFF::Util::Binning) = 1.7.7 perl(Bio::DB::GFF::Util::Rearrange) = 1.7.7 perl(Bio::DB::GenericWebAgent) = 1.7.7 perl(Bio::DB::InMemoryCache) = 1.7.7 perl(Bio::DB::Indexed::Stream) = 1.7.7 perl(Bio::DB::IndexedBase) = 1.7.7 perl(Bio::DB::LocationI) = 1.7.7 perl(Bio::DB::Qual) = 1.7.7 perl(Bio::DB::Query::WebQuery) = 1.7.7 perl(Bio::DB::QueryI) = 1.7.7 perl(Bio::DB::RandomAccessI) = 1.7.7 perl(Bio::DB::ReferenceI) = 1.7.7 perl(Bio::DB::Registry) = 1.7.7 perl(Bio::DB::SeqI) = 1.7.7 perl(Bio::DB::Taxonomy) = 1.7.7 perl(Bio::DB::Taxonomy::flatfile) = 1.7.7 perl(Bio::DB::Taxonomy::greengenes) = 1.7.7 perl(Bio::DB::Taxonomy::list) = 1.7.7 perl(Bio::DB::Taxonomy::silva) = 1.7.7 perl(Bio::DB::UpdateableSeqI) = 1.7.7 perl(Bio::DB::WebDBSeqI) = 1.7.7 perl(Bio::DBLinkContainerI) = 1.7.7 perl(Bio::Das::FeatureTypeI) = 1.7.7 perl(Bio::Das::SegmentI) = 1.7.7 perl(Bio::DasI) = 1.7.7 perl(Bio::DescribableI) = 1.7.7 perl(Bio::Event::EventGeneratorI) = 1.7.7 perl(Bio::Event::EventHandlerI) = 1.7.7 perl(Bio::Factory::AnalysisI) = 1.7.7 perl(Bio::Factory::ApplicationFactoryI) = 1.7.7 perl(Bio::Factory::DriverFactory) = 1.7.7 perl(Bio::Factory::FTLocationFactory) = 1.7.7 perl(Bio::Factory::LocationFactoryI) = 1.7.7 perl(Bio::Factory::ObjectBuilderI) = 1.7.7 perl(Bio::Factory::ObjectFactory) = 1.7.7 perl(Bio::Factory::ObjectFactoryI) = 1.7.7 perl(Bio::Factory::SeqAnalysisParserFactory) = 1.7.7 perl(Bio::Factory::SeqAnalysisParserFactoryI) = 1.7.7 perl(Bio::Factory::SequenceFactoryI) = 1.7.7 perl(Bio::Factory::SequenceProcessorI) = 1.7.7 perl(Bio::Factory::SequenceStreamI) = 1.7.7 perl(Bio::Factory::TreeFactoryI) = 1.7.7 perl(Bio::FeatureHolderI) = 1.7.7 perl(Bio::HandlerBaseI) = 1.7.7 perl(Bio::IdCollectionI) = 1.7.7 perl(Bio::IdentifiableI) = 1.7.7 perl(Bio::Index::Abstract) = 1.7.7 perl(Bio::Index::AbstractSeq) = 1.7.7 perl(Bio::Index::Blast) = 1.7.7 perl(Bio::Index::BlastTable) = 1.7.7 perl(Bio::Index::EMBL) = 1.7.7 perl(Bio::Index::Fasta) = 1.7.7 perl(Bio::Index::Fastq) = 1.7.7 perl(Bio::Index::GenBank) = 1.7.7 perl(Bio::Index::Qual) = 1.7.7 perl(Bio::Index::SwissPfam) = 1.7.7 perl(Bio::Index::Swissprot) = 1.7.7 perl(Bio::LocatableSeq) = 1.7.7 perl(Bio::Location::Atomic) = 1.7.7 perl(Bio::Location::AvWithinCoordPolicy) = 1.7.7 perl(Bio::Location::CoordinatePolicyI) = 1.7.7 perl(Bio::Location::Fuzzy) = 1.7.7 perl(Bio::Location::FuzzyLocationI) = 1.7.7 perl(Bio::Location::NarrowestCoordPolicy) = 1.7.7 perl(Bio::Location::Simple) = 1.7.7 perl(Bio::Location::Split) = 1.7.7 perl(Bio::Location::SplitLocationI) = 1.7.7 perl(Bio::Location::WidestCoordPolicy) = 1.7.7 perl(Bio::LocationI) = 1.7.7 perl(Bio::Matrix::Generic) = 1.7.7 perl(Bio::Matrix::IO) = 1.7.7 perl(Bio::Matrix::IO::mlagan) = 1.7.7 perl(Bio::Matrix::IO::phylip) = 1.7.7 perl(Bio::Matrix::IO::scoring) = 1.7.7 perl(Bio::Matrix::MatrixI) = 1.7.7 perl(Bio::Matrix::Mlagan) = 1.7.7 perl(Bio::Matrix::PSM::IO) = 1.7.7 perl(Bio::Matrix::PSM::IO::mast) = 1.7.7 perl(Bio::Matrix::PSM::IO::masta) = 1.7.7 perl(Bio::Matrix::PSM::IO::meme) = 1.7.7 perl(Bio::Matrix::PSM::IO::psiblast) = 1.7.7 perl(Bio::Matrix::PSM::IO::transfac) = 1.7.7 perl(Bio::Matrix::PSM::InstanceSite) = 1.7.7 perl(Bio::Matrix::PSM::InstanceSiteI) = 1.7.7 perl(Bio::Matrix::PSM::ProtMatrix) = 1.7.7 perl(Bio::Matrix::PSM::ProtPsm) = 1.7.7 perl(Bio::Matrix::PSM::Psm) = 1.7.7 perl(Bio::Matrix::PSM::PsmHeader) = 1.7.7 perl(Bio::Matrix::PSM::PsmHeaderI) = 1.7.7 perl(Bio::Matrix::PSM::PsmI) = 1.7.7 perl(Bio::Matrix::PSM::SiteMatrix) = 1.7.7 perl(Bio::Matrix::PSM::SiteMatrixI) = 1.7.7 perl(Bio::Matrix::PhylipDist) = 1.7.7 perl(Bio::Matrix::Scoring) = 1.7.7 perl(Bio::Ontology::DocumentRegistry) = 1.7.7 perl(Bio::Ontology::GOterm) = 1.7.7 perl(Bio::Ontology::InterProTerm) = 1.7.7 perl(Bio::Ontology::OBOEngine) = 1.7.7 perl(Bio::Ontology::OBOterm) = 1.7.7 perl(Bio::Ontology::Ontology) = 1.7.7 perl(Bio::Ontology::OntologyEngineI) = 1.7.7 perl(Bio::Ontology::OntologyI) = 1.7.7 perl(Bio::Ontology::OntologyStore) = 1.7.7 perl(Bio::Ontology::Path) = 1.7.7 perl(Bio::Ontology::PathI) = 1.7.7 perl(Bio::Ontology::Relationship) = 1.7.7 perl(Bio::Ontology::RelationshipFactory) = 1.7.7 perl(Bio::Ontology::RelationshipI) = 1.7.7 perl(Bio::Ontology::RelationshipType) = 1.7.7 perl(Bio::Ontology::SimpleGOEngine::GraphAdaptor) = 1.7.7 perl(Bio::Ontology::SimpleOntologyEngine) = 1.7.7 perl(Bio::Ontology::Term) = 1.7.7 perl(Bio::Ontology::TermFactory) = 1.7.7 perl(Bio::Ontology::TermI) = 1.7.7 perl(Bio::OntologyIO) = 1.7.7 perl(Bio::OntologyIO::Handlers::BaseSAXHandler) = 1.7.7 perl(Bio::OntologyIO::Handlers::InterProHandler) = 1.7.7 perl(Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler) = 1.7.7 perl(Bio::OntologyIO::InterProParser) = 1.7.7 perl(Bio::OntologyIO::dagflat) = 1.7.7 perl(Bio::OntologyIO::goflat) = 1.7.7 perl(Bio::OntologyIO::obo) = 1.7.7 perl(Bio::OntologyIO::simplehierarchy) = 1.7.7 perl(Bio::OntologyIO::soflat) = 1.7.7 perl(Bio::ParameterBaseI) = 1.7.7 perl(Bio::PrimarySeq) = 1.7.7 perl(Bio::PrimarySeq::Fasta) = 1.7.7 perl(Bio::PrimarySeqI) = 1.7.7 perl(Bio::PullParserI) = 1.7.7 perl(Bio::Range) = 1.7.7 perl(Bio::RangeI) = 1.7.7 perl(Bio::Root::Exception) = 1.7.7 perl(Bio::Root::HTTPget) = 1.7.7 perl(Bio::Root::IO) = 1.7.7 perl(Bio::Root::Root) = 1.7.7 perl(Bio::Root::RootI) = 1.7.7 perl(Bio::Root::Storable) = 1.7.7 perl(Bio::Root::Test) = 1.7.7 perl(Bio::Root::TestObject) = 1.7.7 perl(Bio::Root::Utilities) = 1.7.7 perl(Bio::Root::Version) = 1.7.7 perl(Bio::Search::BlastStatistics) = 1.7.7 perl(Bio::Search::BlastUtils) = 1.7.7 perl(Bio::Search::DatabaseI) = 1.7.7 perl(Bio::Search::GenericDatabase) = 1.7.7 perl(Bio::Search::GenericStatistics) = 1.7.7 perl(Bio::Search::HSP::BlastHSP) = 1.7.7 perl(Bio::Search::HSP::BlastPullHSP) = 1.7.7 perl(Bio::Search::HSP::FastaHSP) = 1.7.7 perl(Bio::Search::HSP::GenericHSP) = 1.7.7 perl(Bio::Search::HSP::HSPFactory) = 1.7.7 perl(Bio::Search::HSP::HSPI) = 1.7.7 perl(Bio::Search::HSP::ModelHSP) = 1.7.7 perl(Bio::Search::HSP::PSLHSP) = 1.7.7 perl(Bio::Search::HSP::PsiBlastHSP) = 1.7.7 perl(Bio::Search::HSP::PullHSPI) = 1.7.7 perl(Bio::Search::HSP::WABAHSP) = 1.7.7 perl(Bio::Search::Hit::BlastHit) = 1.7.7 perl(Bio::Search::Hit::BlastPullHit) = 1.7.7 perl(Bio::Search::Hit::Fasta) = 1.7.7 perl(Bio::Search::Hit::GenericHit) = 1.7.7 perl(Bio::Search::Hit::HitFactory) = 1.7.7 perl(Bio::Search::Hit::HitI) = 1.7.7 perl(Bio::Search::Hit::ModelHit) = 1.7.7 perl(Bio::Search::Hit::PsiBlastHit) = 1.7.7 perl(Bio::Search::Hit::PullHitI) = 1.7.7 perl(Bio::Search::Iteration::GenericIteration) = 1.7.7 perl(Bio::Search::Iteration::IterationI) = 1.7.7 perl(Bio::Search::Processor) = 1.7.7 perl(Bio::Search::Result::BlastPullResult) = 1.7.7 perl(Bio::Search::Result::BlastResult) = 1.7.7 perl(Bio::Search::Result::CrossMatchResult) = 1.7.7 perl(Bio::Search::Result::GenericResult) = 1.7.7 perl(Bio::Search::Result::INFERNALResult) = 1.7.7 perl(Bio::Search::Result::PullResultI) = 1.7.7 perl(Bio::Search::Result::ResultFactory) = 1.7.7 perl(Bio::Search::Result::ResultI) = 1.7.7 perl(Bio::Search::Result::WABAResult) = 1.7.7 perl(Bio::Search::SearchUtils) = 1.7.7 perl(Bio::Search::StatisticsI) = 1.7.7 perl(Bio::Search::Tiling::MapTileUtils) = 1.7.7 perl(Bio::Search::Tiling::MapTiling) = 1.7.7 perl(Bio::Search::Tiling::TilingI) = 1.7.7 perl(Bio::SearchIO) = 1.7.7 perl(Bio::SearchIO::EventHandlerI) = 1.7.7 perl(Bio::SearchIO::FastHitEventBuilder) = 1.7.7 perl(Bio::SearchIO::IteratedSearchResultEventBuilder) = 1.7.7 perl(Bio::SearchIO::SearchResultEventBuilder) = 1.7.7 perl(Bio::SearchIO::SearchWriterI) = 1.7.7 perl(Bio::SearchIO::Writer::GbrowseGFF) = 1.7.7 perl(Bio::SearchIO::Writer::HSPTableWriter) = 1.7.7 perl(Bio::SearchIO::Writer::HTMLResultWriter) = 1.7.7 perl(Bio::SearchIO::Writer::HitTableWriter) = 1.7.7 perl(Bio::SearchIO::Writer::ResultTableWriter) = 1.7.7 perl(Bio::SearchIO::Writer::TextResultWriter) = 1.7.7 perl(Bio::SearchIO::axt) = 1.7.7 perl(Bio::SearchIO::blast) = 1.7.7 perl(Bio::SearchIO::blast_pull) = 1.7.7 perl(Bio::SearchIO::blasttable) = 1.7.7 perl(Bio::SearchIO::cross_match) = 1.7.7 perl(Bio::SearchIO::erpin) = 1.7.7 perl(Bio::SearchIO::exonerate) = 1.7.7 perl(Bio::SearchIO::fasta) = 1.7.7 perl(Bio::SearchIO::gmap_f9) = 1.7.7 perl(Bio::SearchIO::infernal) = 1.7.7 perl(Bio::SearchIO::megablast) = 1.7.7 perl(Bio::SearchIO::psl) = 1.7.7 perl(Bio::SearchIO::rnamotif) = 1.7.7 perl(Bio::SearchIO::sim4) = 1.7.7 perl(Bio::SearchIO::waba) = 1.7.7 perl(Bio::SearchIO::wise) = 1.7.7 perl(Bio::Seq) = 1.7.7 perl(Bio::Seq::BaseSeqProcessor) = 1.7.7 perl(Bio::Seq::EncodedSeq) = 1.7.7 perl(Bio::Seq::LargeLocatableSeq) = 1.7.7 perl(Bio::Seq::LargePrimarySeq) = 1.7.7 perl(Bio::Seq::LargeSeq) = 1.7.7 perl(Bio::Seq::LargeSeqI) = 1.7.7 perl(Bio::Seq::Meta) = 1.7.7 perl(Bio::Seq::Meta::Array) = 1.7.7 perl(Bio::Seq::MetaI) = 1.7.7 perl(Bio::Seq::PrimaryQual) = 1.7.7 perl(Bio::Seq::PrimaryQual::Qual) = 1.7.7 perl(Bio::Seq::PrimedSeq) = 1.7.7 perl(Bio::Seq::QualI) = 1.7.7 perl(Bio::Seq::Quality) = 1.7.7 perl(Bio::Seq::RichSeq) = 1.7.7 perl(Bio::Seq::RichSeqI) = 1.7.7 perl(Bio::Seq::SeqBuilder) = 1.7.7 perl(Bio::Seq::SeqFactory) = 1.7.7 perl(Bio::Seq::SeqFastaSpeedFactory) = 1.7.7 perl(Bio::Seq::SequenceTrace) = 1.7.7 perl(Bio::Seq::SimulatedRead) = 1.7.7 perl(Bio::Seq::TraceI) = 1.7.7 perl(Bio::SeqAnalysisParserI) = 1.7.7 perl(Bio::SeqFeature::Amplicon) = 1.7.7 perl(Bio::SeqFeature::AnnotationAdaptor) = 1.7.7 perl(Bio::SeqFeature::Collection) = 1.7.7 perl(Bio::SeqFeature::CollectionI) = 1.7.7 perl(Bio::SeqFeature::Computation) = 1.7.7 perl(Bio::SeqFeature::FeaturePair) = 1.7.7 perl(Bio::SeqFeature::Gene::Exon) = 1.7.7 perl(Bio::SeqFeature::Gene::ExonI) = 1.7.7 perl(Bio::SeqFeature::Gene::GeneStructure) = 1.7.7 perl(Bio::SeqFeature::Gene::GeneStructureI) = 1.7.7 perl(Bio::SeqFeature::Gene::Intron) = 1.7.7 perl(Bio::SeqFeature::Gene::NC_Feature) = 1.7.7 perl(Bio::SeqFeature::Gene::Poly_A_site) = 1.7.7 perl(Bio::SeqFeature::Gene::Promoter) = 1.7.7 perl(Bio::SeqFeature::Gene::Transcript) = 1.7.7 perl(Bio::SeqFeature::Gene::TranscriptI) = 1.7.7 perl(Bio::SeqFeature::Gene::UTR) = 1.7.7 perl(Bio::SeqFeature::Generic) = 1.7.7 perl(Bio::SeqFeature::Lite) = 1.7.7 perl(Bio::SeqFeature::PositionProxy) = 1.7.7 perl(Bio::SeqFeature::Primer) = 1.7.7 perl(Bio::SeqFeature::Similarity) = 1.7.7 perl(Bio::SeqFeature::SimilarityPair) = 1.7.7 perl(Bio::SeqFeature::SubSeq) = 1.7.7 perl(Bio::SeqFeature::Tools::FeatureNamer) = 1.7.7 perl(Bio::SeqFeature::Tools::IDHandler) = 1.7.7 perl(Bio::SeqFeature::Tools::TypeMapper) = 1.7.7 perl(Bio::SeqFeature::Tools::Unflattener) = 1.7.7 perl(Bio::SeqFeature::TypedSeqFeatureI) = 1.7.7 perl(Bio::SeqFeatureI) = 1.7.7 perl(Bio::SeqI) = 1.7.7 perl(Bio::SeqIO) = 1.7.7 perl(Bio::SeqIO::FTHelper) = 1.7.7 perl(Bio::SeqIO::Handler::GenericRichSeqHandler) = 1.7.7 perl(Bio::SeqIO::MultiFile) = 1.7.7 perl(Bio::SeqIO::ace) = 1.7.7 perl(Bio::SeqIO::asciitree) = 1.7.7 perl(Bio::SeqIO::bsml) = 1.7.7 perl(Bio::SeqIO::bsml_sax) = 1.7.7 perl(Bio::SeqIO::embl) = 1.7.7 perl(Bio::SeqIO::embldriver) = 1.7.7 perl(Bio::SeqIO::fasta) = 1.7.7 perl(Bio::SeqIO::fastq) = 1.7.7 perl(Bio::SeqIO::game) = 1.7.7 perl(Bio::SeqIO::game::featHandler) = 1.7.7 perl(Bio::SeqIO::game::gameHandler) = 1.7.7 perl(Bio::SeqIO::game::gameSubs) = 1.7.7 perl(Bio::SeqIO::game::gameWriter) = 1.7.7 perl(Bio::SeqIO::game::seqHandler) = 1.7.7 perl(Bio::SeqIO::gbdriver) = 1.7.7 perl(Bio::SeqIO::gbxml) = 1.7.7 perl(Bio::SeqIO::gcg) = 1.7.7 perl(Bio::SeqIO::genbank) = 1.7.7 perl(Bio::SeqIO::interpro) = 1.7.7 perl(Bio::SeqIO::kegg) = 1.7.7 perl(Bio::SeqIO::largefasta) = 1.7.7 perl(Bio::SeqIO::locuslink) = 1.7.7 perl(Bio::SeqIO::mbsout) = 1.7.7 perl(Bio::SeqIO::metafasta) = 1.7.7 perl(Bio::SeqIO::msout) = 1.7.7 perl(Bio::SeqIO::phd) = 1.7.7 perl(Bio::SeqIO::pir) = 1.7.7 perl(Bio::SeqIO::qual) = 1.7.7 perl(Bio::SeqIO::raw) = 1.7.7 perl(Bio::SeqIO::scf) = 1.7.7 perl(Bio::SeqIO::seqxml) = 1.7.7 perl(Bio::SeqIO::swiss) = 1.7.7 perl(Bio::SeqIO::swissdriver) = 1.7.7 perl(Bio::SeqIO::tab) = 1.7.7 perl(Bio::SeqIO::table) = 1.7.7 perl(Bio::SeqIO::tigr) = 1.7.7 perl(Bio::SeqIO::tigrxml) = 1.7.7 perl(Bio::SeqIO::tinyseq) = 1.7.7 perl(Bio::SeqIO::tinyseq::tinyseqHandler) = 1.7.7 perl(Bio::SeqUtils) = 1.7.7 perl(Bio::SimpleAlign) = 1.7.7 perl(Bio::SimpleAnalysisI) = 1.7.7 perl(Bio::Species) = 1.7.7 perl(Bio::Taxon) = 1.7.7 perl(Bio::Tools::Alignment::Consed) = 1.7.7 perl(Bio::Tools::Alignment::Trim) = 1.7.7 perl(Bio::Tools::AmpliconSearch) = 1.7.7 perl(Bio::Tools::Analysis::SimpleAnalysisBase) = 1.7.7 perl(Bio::Tools::AnalysisResult) = 1.7.7 perl(Bio::Tools::Blat) = 1.7.7 perl(Bio::Tools::CodonTable) = 1.7.7 perl(Bio::Tools::Coil) = 1.7.7 perl(Bio::Tools::ECnumber) = 1.7.7 perl(Bio::Tools::EMBOSS::Palindrome) = 1.7.7 perl(Bio::Tools::EPCR) = 1.7.7 perl(Bio::Tools::ESTScan) = 1.7.7 perl(Bio::Tools::Eponine) = 1.7.7 perl(Bio::Tools::Est2Genome) = 1.7.7 perl(Bio::Tools::Fgenesh) = 1.7.7 perl(Bio::Tools::FootPrinter) = 1.7.7 perl(Bio::Tools::GFF) = 1.7.7 perl(Bio::Tools::Geneid) = 1.7.7 perl(Bio::Tools::Genemark) = 1.7.7 perl(Bio::Tools::Genewise) = 1.7.7 perl(Bio::Tools::Genomewise) = 1.7.7 perl(Bio::Tools::Genscan) = 1.7.7 perl(Bio::Tools::Glimmer) = 1.7.7 perl(Bio::Tools::Grail) = 1.7.7 perl(Bio::Tools::GuessSeqFormat) = 1.7.7 perl(Bio::Tools::IUPAC) = 1.7.7 perl(Bio::Tools::Lucy) = 1.7.7 perl(Bio::Tools::MZEF) = 1.7.7 perl(Bio::Tools::Match) = 1.7.7 perl(Bio::Tools::OddCodes) = 1.7.7 perl(Bio::Tools::Phylo::Gerp) = 1.7.7 perl(Bio::Tools::Phylo::Molphy) = 1.7.7 perl(Bio::Tools::Phylo::Molphy::Result) = 1.7.7 perl(Bio::Tools::Phylo::Phylip::ProtDist) = 1.7.7 perl(Bio::Tools::Prediction::Exon) = 1.7.7 perl(Bio::Tools::Prediction::Gene) = 1.7.7 perl(Bio::Tools::Primer3) = 1.7.7 perl(Bio::Tools::Primer::Assessor::Base) = 1.7.7 perl(Bio::Tools::Primer::AssessorI) = 1.7.7 perl(Bio::Tools::Primer::Feature) = 1.7.7 perl(Bio::Tools::Primer::Pair) = 1.7.7 perl(Bio::Tools::Prints) = 1.7.7 perl(Bio::Tools::Profile) = 1.7.7 perl(Bio::Tools::Promoterwise) = 1.7.7 perl(Bio::Tools::PrositeScan) = 1.7.7 perl(Bio::Tools::Pseudowise) = 1.7.7 perl(Bio::Tools::QRNA) = 1.7.7 perl(Bio::Tools::RandomDistFunctions) = 1.7.7 perl(Bio::Tools::RepeatMasker) = 1.7.7 perl(Bio::Tools::Run::Analysis) = 1.7.7 perl(Bio::Tools::Run::Analysis::Job) = 1.7.7 perl(Bio::Tools::Run::Analysis::Utils) = 1.7.7 perl(Bio::Tools::Run::AnalysisFactory) = 1.7.7 perl(Bio::Tools::Run::GenericParameters) = 1.7.7 perl(Bio::Tools::Run::ParametersI) = 1.7.7 perl(Bio::Tools::Run::Phylo::PhyloBase) = 1.7.7 perl(Bio::Tools::Run::WrapperBase) = 1.7.7 perl(Bio::Tools::Seg) = 1.7.7 perl(Bio::Tools::SeqPattern) = 1.7.7 perl(Bio::Tools::SeqPattern::Backtranslate) = 1.7.7 perl(Bio::Tools::SeqStats) = 1.7.7 perl(Bio::Tools::SeqWords) = 1.7.7 perl(Bio::Tools::Sigcleave) = 1.7.7 perl(Bio::Tools::Signalp) = 1.7.7 perl(Bio::Tools::Signalp::ExtendedSignalp) = 1.7.7 perl(Bio::Tools::Sim4::Exon) = 1.7.7 perl(Bio::Tools::Sim4::Results) = 1.7.7 perl(Bio::Tools::Spidey::Exon) = 1.7.7 perl(Bio::Tools::Spidey::Results) = 1.7.7 perl(Bio::Tools::TandemRepeatsFinder) = 1.7.7 perl(Bio::Tools::TargetP) = 1.7.7 perl(Bio::Tools::Tmhmm) = 1.7.7 perl(Bio::Tools::ipcress) = 1.7.7 perl(Bio::Tools::isPcr) = 1.7.7 perl(Bio::Tools::pICalculator) = 1.7.7 perl(Bio::Tools::tRNAscanSE) = 1.7.7 perl(Bio::Tree::AnnotatableNode) = 1.7.7 perl(Bio::Tree::Compatible) = 1.7.7 perl(Bio::Tree::DistanceFactory) = 1.7.7 perl(Bio::Tree::Node) = 1.7.7 perl(Bio::Tree::NodeI) = 1.7.7 perl(Bio::Tree::NodeNHX) = 1.7.7 perl(Bio::Tree::RandomFactory) = 1.7.7 perl(Bio::Tree::Statistics) = 1.7.7 perl(Bio::Tree::Tree) = 1.7.7 perl(Bio::Tree::TreeFunctionsI) = 1.7.7 perl(Bio::Tree::TreeI) = 1.7.7 perl(Bio::TreeIO) = 1.7.7 perl(Bio::TreeIO::NewickParser) = 1.7.7 perl(Bio::TreeIO::TreeEventBuilder) = 1.7.7 perl(Bio::TreeIO::cluster) = 1.7.7 perl(Bio::TreeIO::lintree) = 1.7.7 perl(Bio::TreeIO::newick) = 1.7.7 perl(Bio::TreeIO::nexus) = 1.7.7 perl(Bio::TreeIO::nhx) = 1.7.7 perl(Bio::TreeIO::pag) = 1.7.7 perl(Bio::TreeIO::phyloxml) = 1.7.7 perl(Bio::TreeIO::tabtree) = 1.7.7 perl(Bio::UpdateableSeqI) = 1.7.7 perl(Bio::WebAgent) = 1.7.7 perl(BioPerl) = 1.7.7 perl-BioPerl = 1.7.7-2.mga8 perl-bioperl Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: perl(AnyDBM_File) perl(Bio::Align::AlignI) perl(Bio::Align::PairwiseStatistics) perl(Bio::Align::StatisticsI) perl(Bio::Align::Utilities) perl(Bio::AlignIO) perl(Bio::AnalysisI) perl(Bio::AnalysisParserI) perl(Bio::AnalysisResultI) perl(Bio::AnnotatableI) perl(Bio::Annotation::AnnotationFactory) perl(Bio::Annotation::Collection) perl(Bio::Annotation::Comment) perl(Bio::Annotation::DBLink) perl(Bio::Annotation::OntologyTerm) perl(Bio::Annotation::Reference) perl(Bio::Annotation::Relation) perl(Bio::Annotation::SimpleValue) perl(Bio::Annotation::TagTree) perl(Bio::Annotation::Target) perl(Bio::Annotation::TypeManager) perl(Bio::AnnotationCollectionI) perl(Bio::AnnotationI) perl(Bio::CodonUsage::Table) perl(Bio::DB::Failover) perl(Bio::DB::Fasta) perl(Bio::DB::Flat) perl(Bio::DB::Flat::BDB) perl(Bio::DB::GFF::Util::Binning) perl(Bio::DB::IndexedBase) perl(Bio::DB::QueryI) perl(Bio::DB::RandomAccessI) perl(Bio::DB::Registry) perl(Bio::DB::SeqI) perl(Bio::DB::Taxonomy) perl(Bio::DB::Taxonomy::list) perl(Bio::DB::WebDBSeqI) perl(Bio::Das::SegmentI) perl(Bio::DescribableI) perl(Bio::Event::EventGeneratorI) perl(Bio::Event::EventHandlerI) perl(Bio::Factory::AnalysisI) perl(Bio::Factory::DriverFactory) perl(Bio::Factory::FTLocationFactory) perl(Bio::Factory::LocationFactoryI) perl(Bio::Factory::ObjectBuilderI) perl(Bio::Factory::ObjectFactory) perl(Bio::Factory::ObjectFactoryI) perl(Bio::Factory::SeqAnalysisParserFactoryI) perl(Bio::Factory::SequenceFactoryI) perl(Bio::Factory::SequenceProcessorI) perl(Bio::Factory::SequenceStreamI) perl(Bio::Factory::TreeFactoryI) perl(Bio::FeatureHolderI) perl(Bio::HandlerBaseI) perl(Bio::IdentifiableI) perl(Bio::Index::Abstract) perl(Bio::Index::AbstractSeq) perl(Bio::Index::EMBL) perl(Bio::Index::Fasta) perl(Bio::Index::GenBank) perl(Bio::Index::SwissPfam) perl(Bio::Index::Swissprot) perl(Bio::LocatableSeq) perl(Bio::Location::Atomic) perl(Bio::Location::CoordinatePolicyI) perl(Bio::Location::Fuzzy) perl(Bio::Location::FuzzyLocationI) perl(Bio::Location::Simple) perl(Bio::Location::Split) perl(Bio::Location::SplitLocationI) perl(Bio::Location::WidestCoordPolicy) perl(Bio::LocationI) perl(Bio::Matrix::Generic) perl(Bio::Matrix::IO) perl(Bio::Matrix::MatrixI) perl(Bio::Matrix::Mlagan) perl(Bio::Matrix::PSM::IO) perl(Bio::Matrix::PSM::InstanceSite) perl(Bio::Matrix::PSM::InstanceSiteI) perl(Bio::Matrix::PSM::ProtMatrix) perl(Bio::Matrix::PSM::Psm) perl(Bio::Matrix::PSM::PsmHeader) perl(Bio::Matrix::PSM::PsmHeaderI) perl(Bio::Matrix::PSM::PsmI) perl(Bio::Matrix::PSM::SiteMatrix) perl(Bio::Matrix::PSM::SiteMatrixI) perl(Bio::Matrix::PhylipDist) perl(Bio::Matrix::Scoring) perl(Bio::Ontology::DocumentRegistry) perl(Bio::Ontology::OBOEngine) perl(Bio::Ontology::Ontology) perl(Bio::Ontology::OntologyEngineI) perl(Bio::Ontology::OntologyI) perl(Bio::Ontology::OntologyStore) perl(Bio::Ontology::PathI) perl(Bio::Ontology::Relationship) perl(Bio::Ontology::RelationshipFactory) perl(Bio::Ontology::RelationshipI) perl(Bio::Ontology::RelationshipType) perl(Bio::Ontology::SimpleGOEngine::GraphAdaptor) perl(Bio::Ontology::SimpleOntologyEngine) perl(Bio::Ontology::Term) perl(Bio::Ontology::TermFactory) perl(Bio::Ontology::TermI) perl(Bio::OntologyIO) perl(Bio::OntologyIO::Handlers::BaseSAXHandler) perl(Bio::OntologyIO::Handlers::InterProHandler) perl(Bio::OntologyIO::dagflat) perl(Bio::ParameterBaseI) perl(Bio::PrimarySeq) perl(Bio::PrimarySeqI) perl(Bio::PullParserI) perl(Bio::Range) perl(Bio::RangeI) perl(Bio::Root::Exception) perl(Bio::Root::HTTPget) perl(Bio::Root::IO) perl(Bio::Root::Root) perl(Bio::Root::RootI) perl(Bio::Search::BlastStatistics) perl(Bio::Search::BlastUtils) perl(Bio::Search::DatabaseI) perl(Bio::Search::GenericStatistics) perl(Bio::Search::HSP::BlastPullHSP) perl(Bio::Search::HSP::GenericHSP) perl(Bio::Search::HSP::HSPFactory) perl(Bio::Search::HSP::HSPI) perl(Bio::Search::HSP::PullHSPI) perl(Bio::Search::Hit::BlastPullHit) perl(Bio::Search::Hit::GenericHit) perl(Bio::Search::Hit::HitFactory) perl(Bio::Search::Hit::HitI) perl(Bio::Search::Hit::PullHitI) perl(Bio::Search::Iteration::IterationI) perl(Bio::Search::Result::BlastPullResult) perl(Bio::Search::Result::CrossMatchResult) perl(Bio::Search::Result::GenericResult) perl(Bio::Search::Result::PullResultI) perl(Bio::Search::Result::ResultFactory) perl(Bio::Search::Result::ResultI) perl(Bio::Search::SearchUtils) perl(Bio::Search::StatisticsI) perl(Bio::Search::Tiling::MapTileUtils) perl(Bio::Search::Tiling::TilingI) perl(Bio::SearchIO) perl(Bio::SearchIO::EventHandlerI) perl(Bio::SearchIO::FastHitEventBuilder) perl(Bio::SearchIO::IteratedSearchResultEventBuilder) perl(Bio::SearchIO::SearchResultEventBuilder) perl(Bio::SearchIO::SearchWriterI) perl(Bio::SearchIO::Writer::ResultTableWriter) perl(Bio::Seq) perl(Bio::Seq::LargeLocatableSeq) perl(Bio::Seq::LargePrimarySeq) perl(Bio::Seq::LargeSeqI) perl(Bio::Seq::Meta) perl(Bio::Seq::Meta::Array) perl(Bio::Seq::MetaI) perl(Bio::Seq::PrimaryQual) perl(Bio::Seq::PrimedSeq) perl(Bio::Seq::QualI) perl(Bio::Seq::Quality) perl(Bio::Seq::RichSeq) perl(Bio::Seq::RichSeqI) perl(Bio::Seq::SeqBuilder) perl(Bio::Seq::SeqFactory) perl(Bio::Seq::SeqFastaSpeedFactory) perl(Bio::Seq::SequenceTrace) perl(Bio::Seq::TraceI) perl(Bio::SeqAnalysisParserI) perl(Bio::SeqFeature::Amplicon) perl(Bio::SeqFeature::CollectionI) perl(Bio::SeqFeature::FeaturePair) perl(Bio::SeqFeature::Gene::Exon) perl(Bio::SeqFeature::Gene::ExonI) perl(Bio::SeqFeature::Gene::GeneStructure) perl(Bio::SeqFeature::Gene::GeneStructureI) perl(Bio::SeqFeature::Gene::Intron) perl(Bio::SeqFeature::Gene::NC_Feature) perl(Bio::SeqFeature::Gene::Transcript) perl(Bio::SeqFeature::Gene::TranscriptI) perl(Bio::SeqFeature::Generic) perl(Bio::SeqFeature::Primer) perl(Bio::SeqFeature::Similarity) perl(Bio::SeqFeature::SimilarityPair) perl(Bio::SeqFeature::SubSeq) perl(Bio::SeqFeature::Tools::IDHandler) perl(Bio::SeqFeature::Tools::TypeMapper) perl(Bio::SeqFeature::Tools::Unflattener) perl(Bio::SeqFeatureI) perl(Bio::SeqI) perl(Bio::SeqIO) perl(Bio::SeqIO::FTHelper) perl(Bio::SeqIO::Handler::GenericRichSeqHandler) perl(Bio::SeqIO::MultiFile) perl(Bio::SeqIO::game::featHandler) perl(Bio::SeqIO::game::gameHandler) perl(Bio::SeqIO::game::gameSubs) perl(Bio::SeqIO::game::gameWriter) perl(Bio::SeqIO::game::seqHandler) perl(Bio::SeqIO::gcg) perl(Bio::SeqIO::tinyseq::tinyseqHandler) perl(Bio::SeqUtils) perl(Bio::SimpleAlign) perl(Bio::SimpleAnalysisI) perl(Bio::Species) perl(Bio::Taxon) perl(Bio::Tools::Alignment::Trim) perl(Bio::Tools::AnalysisResult) perl(Bio::Tools::CodonTable) perl(Bio::Tools::GFF) perl(Bio::Tools::Genewise) perl(Bio::Tools::Genomewise) perl(Bio::Tools::GuessSeqFormat) perl(Bio::Tools::IUPAC) perl(Bio::Tools::Phylo::Molphy::Result) perl(Bio::Tools::Prediction::Exon) perl(Bio::Tools::Prediction::Gene) perl(Bio::Tools::RandomDistFunctions) perl(Bio::Tools::Run::GenericParameters) perl(Bio::Tools::Run::ParametersI) perl(Bio::Tools::Run::WrapperBase) perl(Bio::Tools::SeqPattern) perl(Bio::Tools::SeqStats) perl(Bio::Tools::Signalp) perl(Bio::Tools::Sim4::Exon) perl(Bio::Tools::Spidey::Exon) perl(Bio::Tree::AnnotatableNode) perl(Bio::Tree::Compatible) perl(Bio::Tree::Node) perl(Bio::Tree::NodeI) perl(Bio::Tree::NodeNHX) perl(Bio::Tree::Tree) perl(Bio::Tree::TreeFunctionsI) perl(Bio::Tree::TreeI) perl(Bio::TreeIO) perl(Bio::TreeIO::NewickParser) perl(Bio::TreeIO::TreeEventBuilder) perl(Bio::TreeIO::newick) perl(Bio::WebAgent) perl(Carp) perl(DB_File) perl(Data::Dumper) perl(Data::Stag) perl(Digest::MD5) perl(Dumpvalue) perl(Error) perl(Exporter) perl(Fcntl) perl(File::Basename) perl(File::Copy) perl(File::Path) perl(File::Spec) perl(File::Spec::Functions) perl(File::Temp) perl(FileHandle) perl(Getopt::Long) perl(Graph::Directed) perl(HTTP::Request::Common) perl(HTTP::Response) perl(IO::File) perl(IO::Handle) perl(IO::Pipe) perl(IO::Socket) perl(IO::String) perl(IPC::Run) perl(LWP::UserAgent) perl(List::MoreUtils) perl(List::Util) perl(Math::BigFloat) perl(POSIX) perl(Pod::Usage) perl(Scalar::Util) perl(Set::Scalar) perl(Storable) perl(Symbol) perl(Test::Builder) perl(Test::Builder::Module) perl(Test::Most) perl(Text::Balanced) perl(Tie::Handle) perl(Time::HiRes) perl(UNIVERSAL) perl(URI) perl(XML::DOM) perl(XML::DOM::XPath) perl(XML::LibXML) perl(XML::LibXML::Reader) perl(XML::Parser::PerlSAX) perl(XML::SAX) perl(XML::SAX::Base) perl(XML::SAX::Writer) perl(XML::Twig) perl(XML::Writer) perl(YAML) perl(base) perl(constant) perl(integer) perl(overload) perl(parent) perl(strict) perl(utf8) perl(vars) perl(version) perl(warnings) perl-base >= 2:5.32.0 Obsoletes: perl-bioperl <= 1.6.901 Checking for unpackaged file(s): /usr/lib/rpm/check-files /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64 Wrote: /home/iurt/rpmbuild/RPMS/noarch/perl-BioPerl-1.7.7-2.mga8.noarch.rpm Executing(%clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.3wjJU9 + umask 022 + cd /home/iurt/rpmbuild/BUILD + cd BioPerl-1.7.7 + /usr/bin/rm -rf /home/iurt/rpmbuild/BUILDROOT/perl-BioPerl-1.7.7-2.mga8.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(--clean): /bin/sh -e /home/iurt/rpmbuild/tmp/rpm-tmp.vRMYH5 + umask 022 + cd /home/iurt/rpmbuild/BUILD + rm -rf BioPerl-1.7.7 + RPM_EC=0 ++ jobs -p + exit 0 D: [iurt_root_command] Success!