D: [iurt_root_command] chroot Installing /home/pterjan/rpmbuild/SRPMS/openbabel-3.1.1-14.mga10.src.rpm Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.acRpk1 + umask 022 + cd /home/pterjan/rpmbuild/BUILD + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + cd /home/pterjan/rpmbuild/BUILD + rm -rf openbabel-3.1.1 + /usr/lib/rpm/rpmuncompress -x /home/pterjan/rpmbuild/SOURCES/openbabel-3.1.1-source.tar.bz2 + STATUS=0 + '[' 0 -ne 0 ']' + cd openbabel-3.1.1 + rm -rf /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1-SPECPARTS + /usr/bin/mkdir -p /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/openbabel-perl.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/openbabel-plugindir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/openbabel-pkgconfig-and-cmake-libdir.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/openbabel-noswig-rubymethod.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/openbabel-ruby19-vendorarch.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/openbabel-2.4.1-ruby27.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /home/pterjan/rpmbuild/SOURCES/0001-CMake-fix-time-check-typo-fixes-build-failure-w-GCC-.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + convert src/GUI/babel.xpm -transparent white babel.png + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /home/pterjan/rpmbuild/tmp/rpm-tmp.ylSVIw + umask 022 + cd /home/pterjan/rpmbuild/BUILD + cd openbabel-3.1.1 + '[' 1 -eq 1 ']' + '[' 1 -eq 1 ']' + CFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS=' -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -Wno-dev -S . -B build -DCMAKE_CXX_FLAGS_RELWITHDEBINFO:STRING=-DNDEBUG -DCMAKE_C_FLAGS_RELWITHDEBINFO:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_LIBDIR:PATH=lib64 -DCMAKE_INSTALL_LIBEXECDIR:PATH=libexec -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_RUNSTATEDIR:PATH=/run -DCMAKE_INSTALL_SYSCONFDIR:PATH=/etc -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DCMAKE_BUILD_TYPE=RelWithDebInfo -DLIB_SUFFIX=64 -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON '-DCMAKE_MODULE_LINKER_FLAGS=-Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags' -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_STATIC_LIBS:BOOL=OFF -DCMAKE_INSTALL_LIBDIR:PATH=lib64 -DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON -DENABLE_TESTS:BOOL=OFF -DBUILD_GUI:BOOL=ON -DENABLE_VERSIONED_FORMATS=false -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS:BOOL=ON -DRUBY_BINDINGS:BOOL=ON -DRUN_SWIG=true -DOPENBABEL_USE_SYSTEM_INCHI=ON -- The C compiler identification is GNU 14.0.1 -- The CXX compiler identification is GNU 14.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found INCHI: /usr/lib64/libinchi.so -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.12.6") -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- Found wxWidgets: -L/usr/lib64;-pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.4") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Found Boost: /usr/lib64/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") found components: program_options iostreams -- Found Eigen3: /usr/include (Required is at least version "2.91.0") -- Found Boost: /usr/lib64/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") found components: filesystem iostreams unit_test_framework -- maeparser include dir set as '/usr/include' -- maeparser libraries set as '/usr/lib64/libmaeparser.so' -- Maestro formats will be supported. Using MaeParser libraries at /usr/lib64/libmaeparser.so. -- coordgen include dir set as /usr/include -- coordgen libraries set as '/usr/lib64/libcoordgen.so' -- coordgen templates file set as '/usr/share/coordgen/templates.mae' -- Coordinate generation with Coordgen will be supported. Using Coordgen libraries at /usr/lib64/libcoordgen.so. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.0") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.0 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Found Boost: /usr/lib64/cmake/Boost-1.84.0/BoostConfig.cmake (found suitable version "1.84.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.84.0/BoostConfig.cmake (found version "1.84.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found SWIG: /usr/bin/swig (found version "4.2.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.2.1", minimum required is "2.0") -- Found PythonInterp: /usr/bin/python3 (found version "3.12.2") -- Found PythonLibs: /usr/lib64/libpython3.12.so (found version "3.12.2") -- Python bindings will be compiled -- Found Perl: /usr/bin/perl (found version "5.38.2") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.38.2") -- Perl bindings will be compiled -- Found Ruby: /usr/bin/ruby (found suitable version "3.1.4", minimum required is "1.8.0") -- Ruby bindings will be compiled -- Configuring done (5.5s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: BUILD_STATIC_LIBS CMAKE_C_FLAGS_RELEASE CMAKE_C_FLAGS_RELWITHDEBINFO CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build + /usr/bin/cmake --build build -j16 --verbose Change Dir: '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j16 /usr/bin/cmake -S/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 -B/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/CMakeFiles /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/CMakeFiles/openbabel.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/bitvec.cpp.o [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/chargemodel.cpp.o [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bond.cpp.o [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/builder.cpp.o [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/bondtyper.cpp.o [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF CMakeFiles/openbabel.dir/alias.cpp.o.d -o CMakeFiles/openbabel.dir/alias.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/alias.cpp [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bitvec.cpp.o -MF CMakeFiles/openbabel.dir/bitvec.cpp.o.d -o CMakeFiles/openbabel.dir/bitvec.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/bitvec.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/chargemodel.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/base.cpp.o -MF CMakeFiles/openbabel.dir/base.cpp.o.d -o CMakeFiles/openbabel.dir/base.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/base.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bond.cpp.o -MF CMakeFiles/openbabel.dir/bond.cpp.o.d -o CMakeFiles/openbabel.dir/bond.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/bond.cpp [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/data.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF CMakeFiles/openbabel.dir/atom.cpp.o.d -o CMakeFiles/openbabel.dir/atom.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/atom.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/bondtyper.cpp.o -MF CMakeFiles/openbabel.dir/bondtyper.cpp.o.d -o CMakeFiles/openbabel.dir/bondtyper.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/bondtyper.cpp [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/descriptor.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF CMakeFiles/openbabel.dir/builder.cpp.o.d -o CMakeFiles/openbabel.dir/builder.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/builder.cpp [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/canon.cpp.o -MF CMakeFiles/openbabel.dir/canon.cpp.o.d -o CMakeFiles/openbabel.dir/canon.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/canon.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chains.cpp.o -MF CMakeFiles/openbabel.dir/chains.cpp.o.d -o CMakeFiles/openbabel.dir/chains.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/chains.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data.cpp.o -MF CMakeFiles/openbabel.dir/data.cpp.o.d -o CMakeFiles/openbabel.dir/data.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/data.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/data_utilities.cpp.o -MF CMakeFiles/openbabel.dir/data_utilities.cpp.o.d -o CMakeFiles/openbabel.dir/data_utilities.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/data_utilities.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptor.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/elements.cpp.o -MF CMakeFiles/openbabel.dir/elements.cpp.o.d -o CMakeFiles/openbabel.dir/elements.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/elements.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprint.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefield.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/chargemodel.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprint.cpp:27: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprint.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefield.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/set:62, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefield.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptor.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptor.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/alias.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/alias.cpp:16: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/format.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF CMakeFiles/openbabel.dir/format.cpp.o.d -o CMakeFiles/openbabel.dir/format.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/format.cpp [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/generic.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/generic.cpp.o -MF CMakeFiles/openbabel.dir/generic.cpp.o.d -o CMakeFiles/openbabel.dir/generic.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/generic.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/builder.cpp:31: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/builder.h:23, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/builder.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/graphsym.cpp.o -MF CMakeFiles/openbabel.dir/graphsym.cpp.o.d -o CMakeFiles/openbabel.dir/graphsym.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/graphsym.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/format.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 4%] Building CXX object src/CMakeFiles/openbabel.dir/grid.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT 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-DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/griddata.cpp.o -MF CMakeFiles/openbabel.dir/griddata.cpp.o.d -o CMakeFiles/openbabel.dir/griddata.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/griddata.cpp [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/isomorphism.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/kekulize.cpp.o -MF CMakeFiles/openbabel.dir/kekulize.cpp.o.d -o CMakeFiles/openbabel.dir/kekulize.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/kekulize.cpp [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/locale.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/locale.cpp.o -MF CMakeFiles/openbabel.dir/locale.cpp.o.d -o CMakeFiles/openbabel.dir/locale.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/locale.cpp [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/matrix.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/matrix.cpp.o -MF CMakeFiles/openbabel.dir/matrix.cpp.o.d -o CMakeFiles/openbabel.dir/matrix.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/matrix.cpp [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/mcdlutil.cpp [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/molchrg.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/molchrg.cpp.o -MF CMakeFiles/openbabel.dir/molchrg.cpp.o.d -o CMakeFiles/openbabel.dir/molchrg.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/molchrg.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:27: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/mcdlutil.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/mol.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mol.cpp.o -MF CMakeFiles/openbabel.dir/mol.cpp.o.d -o CMakeFiles/openbabel.dir/mol.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/mol.cpp [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/obconversion.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/obconversion.cpp [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/obfunctions.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/oberror.cpp.o -MF CMakeFiles/openbabel.dir/oberror.cpp.o.d -o CMakeFiles/openbabel.dir/oberror.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/oberror.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obfunctions.cpp.o -MF CMakeFiles/openbabel.dir/obfunctions.cpp.o.d -o CMakeFiles/openbabel.dir/obfunctions.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/obfunctions.cpp [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obiter.cpp.o -MF CMakeFiles/openbabel.dir/obiter.cpp.o.d -o CMakeFiles/openbabel.dir/obiter.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/obiter.cpp [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/obutil.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obutil.cpp.o -MF CMakeFiles/openbabel.dir/obutil.cpp.o.d -o CMakeFiles/openbabel.dir/obutil.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/obutil.cpp [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/op.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/op.cpp.o -MF CMakeFiles/openbabel.dir/op.cpp.o.d -o CMakeFiles/openbabel.dir/op.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/op.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/obconversion.cpp:48: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/obconversion.cpp:37: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/parsmart.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/parsmart.cpp.o -MF CMakeFiles/openbabel.dir/parsmart.cpp.o.d -o CMakeFiles/openbabel.dir/parsmart.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/parsmart.cpp [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/patty.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/patty.cpp.o -MF CMakeFiles/openbabel.dir/patty.cpp.o.d -o CMakeFiles/openbabel.dir/patty.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/patty.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/op.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/phmodel.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON 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-DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/plugin.cpp.o -MF CMakeFiles/openbabel.dir/plugin.cpp.o.d -o CMakeFiles/openbabel.dir/plugin.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/plugin.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/pointgroup.cpp.o -MF CMakeFiles/openbabel.dir/pointgroup.cpp.o.d -o CMakeFiles/openbabel.dir/pointgroup.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/pointgroup.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF CMakeFiles/openbabel.dir/query.cpp.o.d -o CMakeFiles/openbabel.dir/query.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/query.cpp [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/rand.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF CMakeFiles/openbabel.dir/rand.cpp.o.d -o CMakeFiles/openbabel.dir/rand.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/rand.cpp [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/reactionfacade.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/plugin.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/query.cpp:29: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/bond.h:31, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/query.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/query.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF CMakeFiles/openbabel.dir/residue.cpp.o.d -o CMakeFiles/openbabel.dir/residue.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/residue.cpp [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/ring.cpp.o -MF CMakeFiles/openbabel.dir/ring.cpp.o.d -o CMakeFiles/openbabel.dir/ring.cpp.o -c 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-fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/tokenst.cpp [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/transform.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/transform.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/typer.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/typer.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/tautomer.cpp:26: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/tautomer.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/tautomer.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/obmolecformat.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/conformersearch.cpp [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/confsearch.cpp [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/distgeom.cpp [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/dlhandler_unix.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/transform.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/transform.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/depict/depict.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/obmolecformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/depict/svgpainter.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/confsearch.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/atom.h:30, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/confsearch.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -MF CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o.d -o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/math/matrix3x3.cpp [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -MF CMakeFiles/openbabel.dir/math/spacegroup.cpp.o.d -o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/math/spacegroup.cpp [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/transform3d.cpp.o -MF CMakeFiles/openbabel.dir/math/transform3d.cpp.o.d -o CMakeFiles/openbabel.dir/math/transform3d.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/math/transform3d.cpp [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/vector3.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/math/vector3.cpp [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF CMakeFiles/openbabel.dir/math/align.cpp.o.d -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/math/align.cpp [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -MF CMakeFiles/openbabel.dir/stereo/stereo.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/stereo.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/conformersearch.cpp:22: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/conformersearch.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/conformersearch.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/tetranonplanar.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/distgeom.cpp:38: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/distgeom.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/distgeom.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/confsearch.cpp: In constructor 'OpenBabel::OBDiversePoses::OBDiversePoses(const OpenBabel::OBMol&, double, bool)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/confsearch.cpp:134:66: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/confsearch.cpp: In member function 'int OpenBabel::OBForceField::DiverseConfGen(double, unsigned int, double, bool)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/confsearch.cpp:444:77: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/tetraplanar.cpp [ 15%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -MF CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/squareplanar.cpp [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -MF CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/cistrans.cpp [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -MF CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/tetrahedral.cpp [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/perception.cpp [ 16%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/facade.cpp.o -MF CMakeFiles/openbabel.dir/stereo/facade.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/facade.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/facade.cpp [ 17%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:29: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/gen3dstereohelper.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OBMol&, OBStereo::Ref)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435, from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/stereo/stereo.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetranonplanar.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/stereo/tetrahedral.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:26: /usr/include/c++/14/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:2973:88: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OBMol&, OBStereo::Ref, OBStereo::Ref)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:16: warning: 'template class std::binder1st' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^~~~~~~~~ /usr/include/c++/14/backward/binders.h:108:11: note: declared here 108 | class binder1st | ^~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/stereo/perception.cpp:3005:93: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ [ 17%] Linking CXX shared library ../lib64/libopenbabel.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -Wl,-soname,libopenbabel.so.7 -o ../lib64/libopenbabel.so.7.0.0 CMakeFiles/openbabel.dir/alias.cpp.o CMakeFiles/openbabel.dir/atom.cpp.o CMakeFiles/openbabel.dir/base.cpp.o CMakeFiles/openbabel.dir/bitvec.cpp.o CMakeFiles/openbabel.dir/bond.cpp.o CMakeFiles/openbabel.dir/bondtyper.cpp.o CMakeFiles/openbabel.dir/builder.cpp.o CMakeFiles/openbabel.dir/canon.cpp.o CMakeFiles/openbabel.dir/chains.cpp.o CMakeFiles/openbabel.dir/chargemodel.cpp.o CMakeFiles/openbabel.dir/data.cpp.o CMakeFiles/openbabel.dir/data_utilities.cpp.o CMakeFiles/openbabel.dir/descriptor.cpp.o CMakeFiles/openbabel.dir/elements.cpp.o CMakeFiles/openbabel.dir/fingerprint.cpp.o CMakeFiles/openbabel.dir/forcefield.cpp.o CMakeFiles/openbabel.dir/format.cpp.o CMakeFiles/openbabel.dir/generic.cpp.o CMakeFiles/openbabel.dir/graphsym.cpp.o CMakeFiles/openbabel.dir/grid.cpp.o CMakeFiles/openbabel.dir/griddata.cpp.o CMakeFiles/openbabel.dir/isomorphism.cpp.o CMakeFiles/openbabel.dir/kekulize.cpp.o CMakeFiles/openbabel.dir/locale.cpp.o CMakeFiles/openbabel.dir/matrix.cpp.o CMakeFiles/openbabel.dir/mcdlutil.cpp.o CMakeFiles/openbabel.dir/molchrg.cpp.o CMakeFiles/openbabel.dir/mol.cpp.o CMakeFiles/openbabel.dir/obconversion.cpp.o CMakeFiles/openbabel.dir/oberror.cpp.o CMakeFiles/openbabel.dir/obfunctions.cpp.o CMakeFiles/openbabel.dir/obiter.cpp.o CMakeFiles/openbabel.dir/obutil.cpp.o CMakeFiles/openbabel.dir/op.cpp.o CMakeFiles/openbabel.dir/parsmart.cpp.o CMakeFiles/openbabel.dir/patty.cpp.o CMakeFiles/openbabel.dir/phmodel.cpp.o CMakeFiles/openbabel.dir/plugin.cpp.o CMakeFiles/openbabel.dir/pointgroup.cpp.o CMakeFiles/openbabel.dir/query.cpp.o CMakeFiles/openbabel.dir/rand.cpp.o CMakeFiles/openbabel.dir/reactionfacade.cpp.o CMakeFiles/openbabel.dir/residue.cpp.o CMakeFiles/openbabel.dir/ring.cpp.o CMakeFiles/openbabel.dir/rotamer.cpp.o CMakeFiles/openbabel.dir/rotor.cpp.o CMakeFiles/openbabel.dir/spectrophore.cpp.o CMakeFiles/openbabel.dir/tautomer.cpp.o CMakeFiles/openbabel.dir/tokenst.cpp.o CMakeFiles/openbabel.dir/transform.cpp.o CMakeFiles/openbabel.dir/typer.cpp.o CMakeFiles/openbabel.dir/obmolecformat.cpp.o CMakeFiles/openbabel.dir/conformersearch.cpp.o CMakeFiles/openbabel.dir/confsearch.cpp.o CMakeFiles/openbabel.dir/distgeom.cpp.o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o CMakeFiles/openbabel.dir/depict/depict.cpp.o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o CMakeFiles/openbabel.dir/math/transform3d.cpp.o CMakeFiles/openbabel.dir/math/vector3.cpp.o CMakeFiles/openbabel.dir/math/align.cpp.o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o CMakeFiles/openbabel.dir/stereo/perception.cpp.o CMakeFiles/openbabel.dir/stereo/facade.cpp.o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -lmaeparser -lcoordgen -lm -ldl -lz cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/cmake -E cmake_symlink_library ../lib64/libopenbabel.so.7.0.0 ../lib64/libopenbabel.so.7 ../lib64/libopenbabel.so gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 17%] Built target openbabel /usr/bin/gmake -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend /usr/bin/gmake -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend /usr/bin/gmake -f src/CMakeFiles/plugin_forcefields.dir/build.make 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directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats 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/usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/eem.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdlformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp [ 21%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcopyformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/copyformat.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsmilesformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmol2format_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnulformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/nulformat.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolreport_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF CMakeFiles/molreport.dir/molreport.cpp.o.d -o CMakeFiles/molreport.dir/molreport.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/molreport.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addfilename.cpp:18: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/eem.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/eem.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/copyformat.cpp:14: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:22: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/cansmidescriptor.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/nulformat.cpp:14: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/painterformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mol2format.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/asciiformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/MNAformat.cpp:31: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/molreport.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprints/finger2.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:29: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldgaff.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:35: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:26: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 21%] Linking CXX shared module ../../lib64/copyformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/inchiformat.cpp:32: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Linking CXX shared module ../../lib64/nulformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 22%] Built target copyformat /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 23%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpovrayformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp [ 23%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 23%] Built target nulformat [ 25%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o [ 25%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dasciiformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF 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src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp [ 26%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpainterformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/depict/commandpainter.cpp [ 26%] Linking CXX shared module ../../lib64/molreport.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 26%] Built target molreport /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake "--color=" [ 26%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 27%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dreportformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/reportformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/cmpdfilter.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addinindex.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp: In function 'void OpenBabel::OutputCSTBonds(std::ostream&, OBMol&, std::string)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:526:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 526 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435: /usr/include/c++/14/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/povrayformat.cpp:587:78: warning: 'std::binder1st<_Operation> std::bind1st(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = char]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 587 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:136:5: note: declared here 136 | bind1st(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addpolarh.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 28%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp [ 28%] Linking CXX shared module ../../lib64/painterformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/reportformat.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 28%] Linking CXX shared module ../../lib64/MNAformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 28%] Built target painterformat /usr/bin/gmake -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 28%] Built target MNAformat /usr/bin/gmake -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake "--color=" [ 28%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o [ 28%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsvgformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 28%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtextformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF CMakeFiles/textformat.dir/textformat.cpp.o.d -o CMakeFiles/textformat.dir/textformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/textformat.cpp [ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp [ 28%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:684:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 684 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:684:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:702:70: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 702 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:702:29: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp: In member function 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:739:35: warning: '%+d' directive output may be truncated writing between 2 and 6 bytes into a region of size 3 [-Wformat-truncation=] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:739:34: note: directive argument in the range [-32768, 32767] 739 | snprintf(scharge, 3, "%+d", charge); | ^~~~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PDBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbformat.cpp:739:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 3 and 7 bytes into a destination of size 3 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 28%] Linking CXX shared module ../../lib64/asciiformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.cpp.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 28%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/canonical.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/gasteiger.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 28%] Built target asciiformat /usr/bin/gmake -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 29%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtitleformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/titleformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/addnonpolarh.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/textformat.cpp:14: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/svgformat.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/groupcontrib.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:33: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/groupcontrib.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/canonical.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/none.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:27: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprints/finger3.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/titleformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 29%] Linking CXX shared module ../../lib64/mol2format.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 29%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/changecell.cpp [ 29%] Built target mol2format [ 30%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp [ 31%] Linking CXX shared module ../../lib64/textformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 [ 31%] Linking CXX shared module ../../lib64/reportformat.so /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/textformat.so CMakeFiles/textformat.dir/textformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 31%] Built target textformat [ 31%] Built target reportformat [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp [ 31%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/none.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 31%] Linking CXX shared module ../../lib64/povrayformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 31%] Linking CXX shared module ../../lib64/titleformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/titleformat.so CMakeFiles/titleformat.dir/titleformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 31%] Built target povrayformat /usr/bin/gmake -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/delpolarh.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 32%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dconfabreport_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o CMakeFiles/confabreport.dir/confabreport.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/changecell.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 32%] Built target titleformat /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 32%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp [ 32%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpngformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o CMakeFiles/pngformat.dir/pngformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pngformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/delnonpolarh.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:22: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/gen2D.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Linking CXX shared module ../../lib64/pdbformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 33%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp [ 33%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/mmff94.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 33%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/getinchi.cpp [ 33%] Built target pdbformat /usr/bin/gmake -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/fillUC.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 34%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacesformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/acesformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/confabreport.cpp:34: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pngformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pngformat.cpp:13: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp: In member function 'std::string OpenBabel::MDLFormat::GetTimeDate()': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:1709:27: warning: '%02d' directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 9 [-Wformat-truncation=] 1709 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:1709:22: note: directive argument in the range [-2147483648, 2147483547] 1709 | snprintf(td, 11, "%02d%02d%02d%02d%02d", ts->tm_mon+1, ts->tm_mday, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/iomanip:42, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:27: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'std::string OpenBabel::MDLFormat::GetTimeDate()' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdlformat.cpp:1709:13: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 11 and 56 bytes into a destination of size 11 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp [ 34%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/largest.cpp [ 35%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:31: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/forcefield.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/mmff94.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Linking CXX shared module ../../lib64/svgformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/svgformat.so CMakeFiles/svgformat.dir/svgformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 35%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dinchiformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/unique.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/acesformat.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/filters.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 35%] Built target svgformat /usr/bin/gmake -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 35%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dabinitformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/gen3d.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/largest.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/loader.cpp [ 35%] Linking CXX shared module ../../lib64/pngformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 35%] Built target pngformat [ 36%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/unique.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/fingerprint.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/fingerprints/fingerecfp.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/abinitformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/unique.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 36%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/loader.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/loader.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:22: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp [ 37%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/inchidescriptor.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/inchiformat.h:134:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp [ 37%] Linking CXX shared module ../../lib64/confabreport.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 [ 37%] Linking CXX shared module ../../lib64/inchiformat.so /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/descriptor.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:22: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/oberror.h:26, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/descriptors/smartsdescriptors.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/neutralize.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Built target confabreport [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/optransform.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 37%] Built target inchiformat In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/fromfile.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp [ 37%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp [ 37%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp [ 37%] Linking CXX shared module ../lib64/plugin_fingerprints.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opsplit.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../lib64/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 38%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp [ 38%] Linking CXX shared module ../../lib64/acesformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 38%] Built target plugin_fingerprints /usr/bin/gmake -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 38%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dadfformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp [ 39%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/sort.cpp [ 39%] Linking CXX shared module ../lib64/plugin_descriptors.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../lib64/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 39%] Built target acesformat /usr/bin/gmake -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 39%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Daoforceformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/aoforceformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/partialcharges.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 39%] Linking CXX shared module ../../lib64/abinitformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 39%] Built target plugin_descriptors /usr/bin/gmake -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 39%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcastepformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/castepformat.cpp [ 39%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp [ 39%] Built target abinitformat /usr/bin/gmake -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/optransform.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/phmodel.h:23, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/optransform.h:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/readconformers.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 39%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrystal09format_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp [ 39%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.h:23, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldghemical.cpp:20: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefieldmmff94.cpp:31: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/sort.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:35: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/adfformat.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/aoforceformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/castepformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/sort.cpp:32:28: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 32 | struct Order : public std::binary_function, std::pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opisomorph.h:15, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opisomorph.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/crystal09format.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2865:35: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 2865 | snprintf(tcount, 10, "%d", hcount); | ^ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2865:19: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp: In member function 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2857:35: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 2857 | snprintf(tcount, 10, "%d", i); | ^ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'bool OpenBabel::OBMol2Cansmi::GetSmilesElement(OpenBabel::OBCanSmiNode*, std::vector&, std::vector&, std::string&)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smilesformat.cpp:2857:19: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp [ 39%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/xout.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:32: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/forcefields/forcefielduff.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/conformer.cpp [ 41%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/eqeq.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/xout.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/parsmart.h:23, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/ophighlight.cpp:16: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 41%] Linking CXX shared module ../../lib64/mdlformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 41%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opalign.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 41%] Built target mdlformat /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 41%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:32: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/conformer.cpp:29: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddaltonformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp [ 41%] Linking CXX shared module ../../lib64/castepformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/eqeq.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/eqeq.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 41%] Built target castepformat /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 41%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddmolformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/dmolformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opalign.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opalign.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/daltonformat.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_ops_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp [ 41%] Linking CXX shared module ../../lib64/aoforceformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 41%] Built target aoforceformat /usr/bin/gmake -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 42%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfchkformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/dmolformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 42%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fhiaimsformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/op.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/ops/opconfab.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 42%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/functional:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:16: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Linking CXX shared module ../../lib64/crystal09format.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 42%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgaussformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 42%] Built target crystal09format /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fhiaimsformat.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp: In member function 'virtual bool OpenBabel::FCHKFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:668:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less_equal; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 668 | bind2nd(less_equal(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:671:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 671 | bind2nd(greater(), MxBond)) || | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:674:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = less; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 674 | bind2nd(less(), 0)) || | ~~~~~~~^~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fchkformat.cpp:677:43: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 677 | bind2nd(greater(), Natoms))) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gamessformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Linking CXX shared module ../../lib64/daltonformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 42%] Built target daltonformat /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 42%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -MF CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o.d -o CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gausszmatformat.cpp /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 43%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgulpformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -MF CMakeFiles/gulpformat.dir/gulpformat.cpp.o.d -o CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gulpformat.cpp [ 44%] Linking CXX shared module ../../lib64/smilesformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:29: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gausscubeformat.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/data.h:27, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gaussformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 45%] Linking CXX shared module ../../lib64/adfformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 45%] Linking CXX shared module ../../lib64/dmolformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 45%] Built target smilesformat /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 45%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dhinformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -MF CMakeFiles/hinformat.dir/hinformat.cpp.o.d -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/hinformat.cpp [ 45%] Built target adfformat /usr/bin/gmake -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend /usr/bin/gmake -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 45%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmolproformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -MF CMakeFiles/molproformat.dir/molproformat.cpp.o.d -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/molproformat.cpp [ 46%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Djaguarformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -MF CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o.d -o CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/jaguarformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Built target dmolformat /usr/bin/gmake -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gausszmatformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ [ 46%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmopacformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o -MF CMakeFiles/mopacformat.dir/mopacformat.cpp.o.d -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gulpformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Linking CXX shared module ../../lib64/fhiaimsformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/hinformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/molproformat.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/jaguarformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Built target fhiaimsformat /usr/bin/gmake -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mopacformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dnwchemformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -MF CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o.d -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Linking CXX shared module ../lib64/plugin_ops.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../lib64/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Built target plugin_ops /usr/bin/gmake -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpwscfformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -MF CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o.d -o CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pwscfformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/nwchemformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Linking CXX shared module ../../lib64/hinformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pwscfformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Built target hinformat /usr/bin/gmake -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dqchemformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -MF CMakeFiles/qchemformat.dir/qchemformat.cpp.o.d -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dsiestaformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp [ 46%] Linking CXX shared module ../../lib64/gulpformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Built target gulpformat /usr/bin/gmake -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/turbomoleformat.cpp [ 46%] Linking CXX shared module ../../lib64/jaguarformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Linking CXX shared module ../../lib64/fchkformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 [ 46%] Built target jaguarformat /usr/bin/gmake -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake "--color=" /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:18: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/qchemformat.cpp:16: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dvaspformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp [ 46%] Linking CXX shared module ../../lib64/gausszmatformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Built target fchkformat /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/siestaformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxsfformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xsfformat.cpp [ 46%] Built target gausszmatformat /usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dzindoformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/zindoformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/turbomoleformat.cpp:18: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Linking CXX shared module ../../lib64/molproformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 46%] Linking CXX shared module ../../lib64/gausscubeformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Built target molproformat /usr/bin/gmake -f src/formats/CMakeFiles/maeformat.dir/build.make src/formats/CMakeFiles/maeformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/maeformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/maeformat.dir/build.make src/formats/CMakeFiles/maeformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmaeformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/maeformat.dir/maeformat.cpp.o -MF CMakeFiles/maeformat.dir/maeformat.cpp.o.d -o CMakeFiles/maeformat.dir/maeformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/maeformat.cpp [ 46%] Built target gausscubeformat In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/zindoformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/gmake -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xsfformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgamessukformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp [ 46%] Linking CXX shared module ../../lib64/pwscfformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Built target pwscfformat /usr/bin/gmake -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dorcaformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp: In member function 'virtual bool OpenBabel::VASPFormat::ReadMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:535:35: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = not_equal_to; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 535 | std::bind2nd(std::not_equal_to(), 0.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/vaspformat.cpp:589:36: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 589 | std::bind2nd(std::divides(), max / 100.0)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ [ 46%] Linking CXX shared module ../../lib64/turbomoleformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Built target turbomoleformat /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/APIInterface.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gamessukformat.cpp:14: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/maeformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/gmake -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 46%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/CSRformat.cpp [ 47%] Linking CXX shared module ../../lib64/zindoformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/orcaformat.cpp:18: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 47%] Built target zindoformat /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 48%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/PQSformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/APIInterface.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/CSRformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 48%] Linking CXX shared module ../../lib64/mopacformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 48%] Linking CXX shared module ../../lib64/xsfformat.so gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 [ 48%] Built target mopacformat /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp [ 49%] Linking CXX shared module ../../lib64/APIInterface.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 49%] Linking CXX shared module ../../lib64/qchemformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Built target xsfformat /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dalchemyformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/alchemyformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/PQSformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Built target APIInterface /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o [ 49%] Built target qchemformat cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dacrformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Damberformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/amberformat.cpp [ 49%] Linking CXX shared module ../../lib64/gamessformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 49%] Linking CXX shared module ../../lib64/CSRformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 49%] Linking CXX shared module ../../lib64/siestaformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/MCDLformat.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Built target gamessformat /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbalstformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/balstformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Built target CSRformat /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dbgfformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/bgfformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/alchemyformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Built target siestaformat /usr/bin/gmake -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dboxformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/boxformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp:26: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/acrformat.cpp:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/amberformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Linking CXX shared module ../../lib64/nwchemformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Built target nwchemformat /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacaoformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cacaoformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/balstformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Linking CXX shared module ../../lib64/PQSformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/bgfformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/boxformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Built target PQSformat /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 49%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcacheformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cacheformat.cpp [ 49%] Linking CXX shared module ../../lib64/acrformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 [ 49%] Linking CXX shared module ../../lib64/alchemyformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/acrformat.so CMakeFiles/acrformat.dir/acrformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 49%] Linking CXX shared module ../lib64/plugin_forcefields.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../lib64/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cacaoformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Linking CXX shared module ../../lib64/amberformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/amberformat.so CMakeFiles/amberformat.dir/amberformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: 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-I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 50%] Built target plugin_forcefields /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 50%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawct_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chemdrawct.cpp [ 50%] Linking CXX shared module ../../lib64/balstformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cacheformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 51%] Linking CXX shared module ../../lib64/gaussformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 51%] Built target balstformat /usr/bin/gmake -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 51%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -MF CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o.d -o CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chemtoolformat.cpp [ 51%] Linking CXX shared module ../../lib64/boxformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/boxformat.so CMakeFiles/boxformat.dir/boxformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 51%] Built target gaussformat /usr/bin/gmake -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 51%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcifformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o -MF CMakeFiles/cifformat.dir/cifformat.cpp.o.d -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 51%] Built target boxformat /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 51%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcofformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o CMakeFiles/cofformat.dir/cofformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cccformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/carformat.cpp:18: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp:18: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chem3dformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chemdrawct.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chemtoolformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 51%] Linking CXX shared module ../../lib64/cacheformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 52%] Linking CXX shared module ../../lib64/bgfformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cifformat.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 52%] Built target cacheformat gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cofformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 53%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcrkformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o -MF CMakeFiles/crkformat.dir/crkformat.cpp.o.d -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/crkformat.cpp [ 53%] Built target bgfformat [ 53%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/qeq.cpp [ 54%] Linking CXX shared module ../../lib64/cccformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 55%] Linking CXX shared module ../../lib64/cacaoformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 55%] Built target cccformat /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 55%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcssrformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o -MF CMakeFiles/cssrformat.dir/cssrformat.cpp.o.d -o CMakeFiles/cssrformat.dir/cssrformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cssrformat.cpp [ 55%] Linking CXX shared module ../../lib64/chemdrawct.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 55%] Built target cacaoformat /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build [ 55%] Linking CXX shared module ../../lib64/chemtoolformat.so gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 55%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -MF CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o.d -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp [ 56%] Linking CXX shared module ../../lib64/chem3dformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/crkformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 56%] Built target chemdrawct /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 56%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dexyzformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o -MF CMakeFiles/exyzformat.dir/exyzformat.cpp.o.d -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp [ 56%] Built target chemtoolformat /usr/bin/gmake -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 56%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -MF CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o.d -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp [ 56%] Built target chem3dformat [ 56%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dplugin_charges_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/qeq.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/qeq.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 57%] Linking CXX shared module ../../lib64/carformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 57%] Built target carformat /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 57%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfastaformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o -MF CMakeFiles/fastaformat.dir/fastaformat.cpp.o.d -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp [ 58%] Linking CXX shared module ../../lib64/vaspformat.so [ 58%] Linking CXX shared module ../../lib64/orcaformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/cssrformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/dlpolyformat.cpp:14: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 58%] Built target orcaformat /usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake "--color=" [ 58%] Built target vaspformat /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 58%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfeatformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -MF CMakeFiles/featformat.dir/featformat.cpp.o.d -o CMakeFiles/featformat.dir/featformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/featformat.cpp [ 59%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfhformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -MF CMakeFiles/fhformat.dir/fhformat.cpp.o.d -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fhformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/exyzformat.cpp:18: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/chargemodel.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/qtpie.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/charges/qtpie.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/dlhandler.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:23: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fastsearchformat.cpp:16: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fastaformat.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 60%] Linking CXX shared module ../../lib64/gamessukformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 60%] Built target gamessukformat /usr/bin/gmake -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/featformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 61%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -MF CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o.d -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fhformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 61%] Linking CXX shared module ../../lib64/crkformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 61%] Built target crkformat /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 61%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfpsformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o -MF CMakeFiles/fpsformat.dir/fpsformat.cpp.o.d -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp [ 62%] Linking CXX shared module ../../lib64/cssrformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 62%] Built target cssrformat /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 62%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dfreefracformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o -MF CMakeFiles/freefracformat.dir/freefracformat.cpp.o.d -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/freefracformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fingerprintformat.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 62%] Linking CXX shared module ../../lib64/maeformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/maeformat.dir/link.txt --verbose=1 [ 62%] Linking CXX shared module ../../lib64/featformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/maeformat.so CMakeFiles/maeformat.dir/maeformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/featformat.so CMakeFiles/featformat.dir/featformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 62%] Linking CXX shared module ../../lib64/fhformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/fhformat.so CMakeFiles/fhformat.dir/fhformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 62%] Built target featformat /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/fpsformat.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 62%] Built target maeformat /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake "--color=" [ 62%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dghemicalformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -MF CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o.d -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/ghemicalformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 62%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgromos96format_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o -MF CMakeFiles/gromos96format.dir/gromos96format.cpp.o.d -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gromos96format.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 62%] Built target fhformat /usr/bin/gmake -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build [ 62%] Linking CXX shared module ../../lib64/cofformat.so gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cofformat.dir/link.txt --verbose=1 [ 62%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/cofformat.so CMakeFiles/cofformat.dir/cofformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dgroformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/groformat.dir/groformat.cpp.o -MF CMakeFiles/groformat.dir/groformat.cpp.o.d -o CMakeFiles/groformat.dir/groformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/groformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 62%] Built target cofformat /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 62%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -MF CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o.d -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/freefracformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 62%] Linking CXX shared module ../../lib64/fastaformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 62%] Built target fastaformat /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/ghemicalformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 62%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dlpmdformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -MF CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o.d -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/gromos96format.cpp:54: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/groformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/lmpdatformat.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 63%] Linking CXX shared module ../../lib64/exyzformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 63%] Built target exyzformat /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 63%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmdffformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o -MF CMakeFiles/mdffformat.dir/mdffformat.cpp.o.d -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp [ 63%] Linking CXX shared module ../../lib64/fingerprintformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 63%] Linking CXX shared module ../../lib64/fpsformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/lpmdformat.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 63%] Built target fingerprintformat /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 63%] Linking CXX shared module ../../lib64/fastsearchformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1 [ 63%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmcifformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -MF CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o.d -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mmcifformat.cpp /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 63%] Built target fpsformat /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 63%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmmodformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o -MF CMakeFiles/mmodformat.dir/mmodformat.cpp.o.d -o CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mmodformat.cpp [ 63%] Linking CXX shared module ../../lib64/gromos96format.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 63%] Built target fastsearchformat /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 64%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmoldenformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -MF CMakeFiles/moldenformat.dir/moldenformat.cpp.o.d -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 64%] Built target gromos96format /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 65%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpdformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o -MF CMakeFiles/mpdformat.dir/mpdformat.cpp.o.d -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 65%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmpqcformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -MF CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o.d -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mpqcformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mdffformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 66%] Linking CXX shared module ../../lib64/freefracformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 66%] Built target freefracformat /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mmcifformat.cpp:19: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mmodformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 66%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsiformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -MF CMakeFiles/msiformat.dir/msiformat.cpp.o.d -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp [ 67%] Linking CXX shared module ../../lib64/ghemicalformat.so In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp:35: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/moldenformat.cpp:27: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mpdformat.cpp:22: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/mpqcformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 67%] Built target ghemicalformat /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 67%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dmsmsformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -MF CMakeFiles/msmsformat.dir/msmsformat.cpp.o.d -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp [ 68%] Linking CXX shared module ../../lib64/dlpolyformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 68%] Built target dlpolyformat /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 68%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dopendxformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/msiformat.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 68%] Linking CXX shared module ../../lib64/MCDLformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 68%] Built target MCDLformat /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 68%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Doutformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/outformat.dir/outformat.cpp.o -MF CMakeFiles/outformat.dir/outformat.cpp.o.d -o CMakeFiles/outformat.dir/outformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/outformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp:27: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/msmsformat.cpp:26: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 68%] Linking CXX shared module ../../lib64/mpdformat.so [ 68%] Linking CXX shared module ../../lib64/mpqcformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/sstream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/opendxformat.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 68%] Linking CXX shared module ../../lib64/groformat.so gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 68%] Built target mpdformat /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake "--color=" [ 68%] Built target mpqcformat /usr/bin/gmake -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 68%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -MF CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o.d -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pcmodelformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 68%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -MF CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o.d -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/outformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 68%] Built target groformat /usr/bin/gmake -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 69%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -MF CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o.d -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp [ 69%] Linking CXX shared module ../../lib64/mmodformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined 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/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 69%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dposformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/posformat.dir/posformat.cpp.o -MF CMakeFiles/posformat.dir/posformat.cpp.o.d -o CMakeFiles/posformat.dir/posformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/posformat.cpp [ 69%] Linking CXX shared module ../../lib64/msmsformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 69%] Linking CXX shared module ../../lib64/lmpdatformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 70%] Linking CXX shared module ../../lib64/msiformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 [ 70%] Built target msmsformat /usr/bin/gmake -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake "--color=" /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pcmodelformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 70%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpqrformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -MF CMakeFiles/pqrformat.dir/pqrformat.cpp.o.d -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:24: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 70%] Built target lmpdatformat 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src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o -MF CMakeFiles/shelxformat.dir/shelxformat.cpp.o.d -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp [ 71%] Built target msiformat /usr/bin/gmake -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f 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-fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o -MF CMakeFiles/smileyformat.dir/smileyformat.cpp.o.d -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:30: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pointcloudformat.cpp:28: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/posformat.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 71%] Linking CXX shared module ../../lib64/outformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 71%] Built target outformat /usr/bin/gmake -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:16: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 71%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dstlformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o -MF CMakeFiles/stlformat.dir/stlformat.cpp.o.d -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp:18: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/shelxformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/smileyformat.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 72%] Linking CXX shared module ../../lib64/lpmdformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 72%] Linking CXX shared module ../../lib64/opendxformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 72%] Linking CXX shared module ../../lib64/pcmodelformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 72%] Built target lpmdformat gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake "--color=" [ 72%] Built target opendxformat /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 73%] Linking CXX shared module ../../lib64/cifformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 73%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dthermoformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o -MF CMakeFiles/thermoformat.dir/thermoformat.cpp.o.d -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 73%] Linking CXX shared module ../../lib64/moldenformat.so [ 73%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dtinkerformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -MF CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o.d -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 73%] Built target pcmodelformat /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 73%] Linking CXX shared module ../../lib64/pointcloudformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 [ 74%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dunichemformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o -MF CMakeFiles/unichemformat.dir/unichemformat.cpp.o.d -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/unichemformat.cpp /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:32: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/stlformat.cpp:28: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 74%] Built target moldenformat /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 75%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dviewmolformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -MF CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o.d -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/viewmolformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 75%] Built target cifformat /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake "--color=" [ 75%] Built target pointcloudformat /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 75%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o -MF CMakeFiles/wlnformat.dir/wlnformat.cpp.o.d -o CMakeFiles/wlnformat.dir/wlnformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp [ 76%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxedformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o -MF CMakeFiles/xedformat.dir/xedformat.cpp.o.d -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xedformat.cpp [ 77%] Linking CXX shared module ../../lib64/mdffformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 77%] Linking CXX shared module ../../lib64/posformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 77%] Linking CXX shared module ../../lib64/shelxformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/tinkerformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 77%] Built target mdffformat /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/thermoformat.cpp:21: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/unichemformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 77%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxyzformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o -MF CMakeFiles/xyzformat.dir/xyzformat.cpp.o.d -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xyzformat.cpp [ 77%] Built target posformat /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 77%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dyasaraformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -MF CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o.d -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 77%] Built target shelxformat /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/viewmolformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 77%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drxnformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -MF CMakeFiles/rxnformat.dir/rxnformat.cpp.o.d -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xedformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/wlnformat.cpp:18: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:511:58: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 511 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:511:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:345:52: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 345 | snprintf(type_name, sizeof(type_name), " %-3s", tmp); | ^ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:345:15: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp: In member function 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:528:66: warning: '%-3s' directive output may be truncated writing between 3 and 15 bytes into a region of size 9 [-Wformat-truncation=] 528 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^~~~ ~~~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::PQRFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pqrformat.cpp:528:29: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 17 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp: In function 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:363:60: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 363 | snprintf(padded_name, sizeof(padded_name), " %-3s", tmp); | ^ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void OpenBabel::OutputAtom(OBAtom*, std::ostream&, unsigned int)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/pdbqtformat.cpp:363:19: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 78%] Linking CXX shared module ../../lib64/mmcifformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 79%] Linking CXX shared module ../../lib64/stlformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 79%] Built target mmcifformat /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xyzformat.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 79%] Built target stlformat /usr/bin/gmake -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake "--color=" [ 79%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -MF CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o.d -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chemdrawcdx.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp:34: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 79%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemkinformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -MF CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o.d -o CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chemkinformat.cpp [ 79%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dwlnformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -MF CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o.d -o CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/wln-nextmove.cpp [ 79%] Linking CXX shared module ../../lib64/unichemformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 79%] Linking CXX shared module ../../lib64/xedformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/xedformat.so CMakeFiles/xedformat.dir/xedformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 79%] Linking CXX shared module ../../lib64/viewmolformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:26: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/rxnformat.cpp:18: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 79%] Built target unichemformat /usr/bin/gmake -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/rinchiformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 79%] Built target xedformat [ 79%] Built target viewmolformat [ 79%] Building CXX object src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o /usr/bin/gmake -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend /usr/bin/gmake -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drinchiformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -MF CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o.d -o CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/rinchiformat.cpp gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 81%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o [ 81%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/png2format.dir/png2format.cpp.o -MF CMakeFiles/png2format.dir/png2format.cpp.o.d -o CMakeFiles/png2format.dir/png2format.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/png2format.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Drsmiformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -MF CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o.d -o CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/rsmiformat.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chemdrawcdx.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp: In member function 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)': /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp:572:36: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 572 | snprintf(&buffer[12], 4, "%4d",res->GetNum()); } | ^ In file included from /usr/include/stdio.h:980, from /usr/include/c++/14/cstdio:42, from /usr/include/c++/14/ext/string_conversions.h:45, from /usr/include/c++/14/bits/basic_string.h:4154, from /usr/include/c++/14/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'virtual bool OpenBabel::YOBFormat::WriteMolecule(OpenBabel::OBBase*, OpenBabel::OBConversion*)' at /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/yasaraformat.cpp:572:15: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 5 and 12 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 81%] Linking CXX shared module ../../lib64/tinkerformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 81%] Linking CXX shared module ../../lib64/thermoformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chemkinformat.cpp:31: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/chemkinformat.cpp:18: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 81%] Built target tinkerformat /usr/bin/gmake -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 81%] Linking CXX shared module ../../lib64/yasaraformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 [ 81%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o.d -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/cdxmlformat.cpp /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 81%] Built target thermoformat /usr/bin/gmake -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 81%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -MF CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o.d -o CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/cmlformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 81%] Built target yasaraformat [ 81%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/cmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/rinchiformat.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/rinchiformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Linking CXX shared module ../../lib64/pqrformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/png2format.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/rsmiformat.cpp:23: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/rsmiformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 81%] Built target pqrformat /usr/bin/gmake -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake "--color=" [ 82%] Linking CXX shared module ../../lib64/xyzformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 83%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -MF CMakeFiles/pubchem.dir/xml/pubchem.cpp.o.d -o CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/pubchem.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 83%] Built target xyzformat /usr/bin/gmake -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 83%] Linking CXX shared module ../../lib64/rxnformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 83%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -MF CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o.d -o CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xmlformat.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/cdxmlformat.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 83%] Built target rxnformat /usr/bin/gmake -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 83%] Linking CXX shared module ../../lib64/smileyformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 [ 83%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 83%] Built target smileyformat [ 84%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/pubchem.cpp:17: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/cmlformat.cpp:29: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/math/matrix3x3.h:24, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/cmlformat.cpp:19: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xmlformat.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/cmlreactformat.cpp:15: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 84%] Linking CXX shared module ../../lib64/rinchiformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rinchiformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/rinchiformat.so CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 84%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dxmlformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/xmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp [ 84%] Built target rinchiformat /usr/bin/gmake -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 84%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp [ 84%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchem_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o -MF CMakeFiles/pubchem.dir/xml/xml.cpp.o.d -o CMakeFiles/pubchem.dir/xml/xml.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp [ 84%] Linking CXX shared module ../../lib64/rsmiformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 84%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 84%] Built target rsmiformat /usr/bin/gmake -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 84%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o [ 84%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -MF CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o.d -o CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/json/pubchemjsonformat.cpp cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/g++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -Dpng2format_EXPORTS -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -MF CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o.d -o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/depict/cairopainter.cpp /usr/bin/gmake -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools/CMakeFiles/obabel.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 84%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obabel.dir/obabel.cpp.o -MF CMakeFiles/obabel.dir/obabel.cpp.o.d -o CMakeFiles/obabel.dir/obabel.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obabel.cpp [ 84%] Linking CXX shared module ../../lib64/pdbqtformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 84%] Built target pdbqtformat /usr/bin/gmake -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools/CMakeFiles/obconformer.dir/DependInfo.cmake "--color=" In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/json.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp:19: /usr/include/rapidjson/document.h: In member function 'rapidjson::GenericStringRef& rapidjson::GenericStringRef::operator=(const rapidjson::GenericStringRef&)': /usr/include/rapidjson/document.h:319:82: error: assignment of read-only member 'rapidjson::GenericStringRef::length' 319 | GenericStringRef& operator=(const GenericStringRef& rhs) { s = rhs.s; length = rhs.length; } | ~~~~~~~^~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 84%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obconformer.dir/obconformer.cpp.o -MF CMakeFiles/obconformer.dir/obconformer.cpp.o.d -o CMakeFiles/obconformer.dir/obconformer.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obconformer.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 84%] Linking CXX shared module ../../lib64/wlnformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/wlnformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/wlnformat.so CMakeFiles/wlnformat.dir/wlnformat.cpp.o "CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o" -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/gmake -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools/CMakeFiles/obenergy.dir/DependInfo.cmake "--color=" [ 84%] Built target wlnformat /usr/bin/gmake -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1 /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools/CMakeFiles/obfit.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp:20: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h: At global scope: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/json/chemdoodlejsonformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 85%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obenergy.dir/obenergy.cpp.o -MF CMakeFiles/obenergy.dir/obenergy.cpp.o.d -o CMakeFiles/obenergy.dir/obenergy.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obenergy.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/xml.h:21, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/xml/xml.cpp:15: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:24: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' /usr/bin/gmake -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 85%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obfit.dir/obfit.cpp.o -MF CMakeFiles/obfit.dir/obfit.cpp.o.d -o CMakeFiles/obfit.dir/obfit.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obfit.cpp In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/json.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/json/pubchemjsonformat.cpp:20: /usr/include/rapidjson/document.h: In member function 'rapidjson::GenericStringRef& rapidjson::GenericStringRef::operator=(const rapidjson::GenericStringRef&)': /usr/include/rapidjson/document.h:319:82: error: assignment of read-only member 'rapidjson::GenericStringRef::length' 319 | GenericStringRef& operator=(const GenericStringRef& rhs) { s = rhs.s; length = rhs.length; } | ~~~~~~~^~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obabel.cpp:43: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obabel.cpp:28: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obmolecformat.h:36, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/json/pubchemjsonformat.cpp:21: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h: At global scope: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_tree.h:65, from /usr/include/c++/14/map:62, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/src/formats/json/pubchemjsonformat.cpp:17: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:28, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obconformer.cpp:25: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/forcefield.h:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 85%] Linking CXX shared module ../../lib64/png2format.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/png2format.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/png2format.so CMakeFiles/png2format.dir/png2format.cpp.o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 85%] Built target png2format /usr/bin/gmake -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/depend gmake[2]: 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gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/base.h:25, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obenergy.cpp:25: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /usr/bin/gmake -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/build gmake[2]: Entering directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obfit.cpp:37: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obfit.cpp:35: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 86%] Building CXX object tools/CMakeFiles/obfitall.dir/obfitall.cpp.o cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools && /usr/bin/g++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D__WXGTK__ -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/include -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/data -I/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include -isystem /usr/lib64/wx/include -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obfitall.dir/obfitall.cpp.o -MF CMakeFiles/obfitall.dir/obfitall.cpp.o.d -o CMakeFiles/obfitall.dir/obfitall.cpp.o -c /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obfitall.cpp [ 87%] Linking CXX shared module ../../lib64/xmlformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive 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-Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -rdynamic CMakeFiles/obabel.dir/obabel.cpp.o -o ../bin/obabel -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: *** [src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make:79: src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o] Error 1 gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[1]: *** [CMakeFiles/Makefile2:3821: src/formats/CMakeFiles/chemdoodlejsonformat.dir/all] Error 2 gmake[1]: *** Waiting for unfinished jobs.... [ 88%] Linking CXX shared module ../../lib64/pubchem.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.cpp.o CMakeFiles/pubchem.dir/xml/xml.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 88%] Built target xmlformat [ 88%] Built target obabel [ 88%] Linking CXX shared module ../../lib64/cdxmlformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 88%] Built target pubchem gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 88%] Built target cdxmlformat [ 89%] Linking CXX shared module ../../lib64/chemdrawcdx.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: *** [src/formats/CMakeFiles/pubchemjsonformat.dir/build.make:79: src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o] Error 1 gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake[1]: *** [CMakeFiles/Makefile2:3847: src/formats/CMakeFiles/pubchemjsonformat.dir/all] Error 2 [ 89%] Linking CXX executable ../bin/obenergy cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -rdynamic CMakeFiles/obenergy.dir/obenergy.cpp.o -o ../bin/obenergy -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 89%] Built target chemdrawcdx gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 89%] Built target obenergy In file included from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/format.h:22, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/obconversion.h:37, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obfitall.cpp:40: /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/plugin.h:41:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/include/openbabel/mol.h:44, from /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/tools/obfitall.cpp:35: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Linking CXX executable ../bin/obconformer cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -rdynamic CMakeFiles/obconformer.dir/obconformer.cpp.o -o ../bin/obconformer -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 89%] Built target obconformer [ 89%] Linking CXX executable ../bin/obfit cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -rdynamic CMakeFiles/obfit.dir/obfit.cpp.o -o ../bin/obfit -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 89%] Built target obfit [ 89%] Linking CXX executable ../bin/obfitall cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfitall.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -rdynamic CMakeFiles/obfitall.dir/obfitall.cpp.o -o ../bin/obfitall -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz [ 89%] Linking CXX shared module ../../lib64/cmlreactformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 89%] Built target obfitall gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 89%] Built target cmlreactformat [ 90%] Linking CXX shared module ../../lib64/chemkinformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 90%] Built target chemkinformat [ 90%] Linking CXX shared module ../../lib64/cmlformat.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../../lib64/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 90%] Built target cmlformat [ 90%] Linking CXX shared module ../lib64/plugin_charges.so cd /home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -g -pipe -Wformat -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=2 -fstack-protector-strong -m64 -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection=full -pthread -fpermissive -DNDEBUG -O2 -g -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--as-needed -Wl,--no-undefined -Wl,-z,relro -Wl,-z,now -Wl,-O1 -Wl,--build-id=sha1 -Wl,--enable-new-dtags -shared -o ../lib64/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -Wl,-rpath,/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build/lib64: -lmaeparser -lcoordgen -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lmaeparser -lcoordgen -lm -ldl -lz gmake[2]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' [ 90%] Built target plugin_charges gmake[1]: Leaving directory '/home/pterjan/rpmbuild/BUILD/openbabel-3.1.1/build' gmake: *** [Makefile:139: all] Error 2 error: Bad exit status from /home/pterjan/rpmbuild/tmp/rpm-tmp.ylSVIw (%build) RPM build errors: Bad exit status from /home/pterjan/rpmbuild/tmp/rpm-tmp.ylSVIw (%build) I: [iurt_root_command] ERROR: chroot